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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <LAB>
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- <optimal>[1 0.3]</optimal>
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- </shootingtpms>
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- <res_BB>0</res_BB>
- <tissue_mn>[3.16599988937378 21.3031253814697 42.9952507019043 70.5842437744141]</tissue_mn>
- <tissue_mnr>[0.0448542013764381 0.301811337471008 0.609133780002594 0.999999940395355]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[13.5742022472706 10.6869052225681 8.82357631661938 5.78682542860425]</tissue_std>
- <tissue_stdr>[0.201343163847923 0.158516511321068 0.130878165364265 0.0858347117900848]</tissue_stdr>
- <contrast>24.8095893859863</contrast>
- <contrastr>0.351489037275314</contrastr>
- <NCR>0.147500097751617</NCR>
- <ICR>0.443416893482208</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.875 1.79998779296875 1.875]</res_vx_vol>
- <res_RMS>1.85033384869114</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62308502197266 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.81099772453308</contrastr>
- <NCR>2.44846534729004</NCR>
- <ICR>1.55956566333771</ICR>
- <SurfaceEulerNumber>2.83673469387755</SurfaceEulerNumber>
- <SurfaceDefectArea>1.28035588119942</SurfaceDefectArea>
- <SurfaceDefectNumber>2.3</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.46365785598755</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.53326010704041</SurfacePositionRMSE>
- <IQR>2.27380449454885</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-182913</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>38</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12142352479769</SurfaceDefectArea>
- <SurfaceDefectNumber>26</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0731828957796097</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.076663002371788</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>38</EC_abs>
- <defect_size>1.12142352479769</defect_size>
- <vol_abs_CGW>[202.064970068125 672.596102122875 492.450162863521 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.653790143377641</vol_abs_WMH>
- <vol_rel_WMH>0.000478227467241586</vol_rel_WMH>
- <surf_TSA>1983.44671916652</surf_TSA>
- <vol_TIV>1367.11123505452</vol_TIV>
- <vol_rel_CGW>[0.147804337267455 0.491983450122149 0.360212212610397 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.4178576448528 0.599097920870743]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.42600798606873 0.70630496919009 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.84326268061612 0.242419962568695 0.292409283656492;2.44195081480116 0.167816748016414 0.430045641407439;3.05869823958285 0.245850121430028 0.27754507493607]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.846248284948716 0.305940162152068 0.58961874138723;3.97768856909602 0.379515560655248 0.41038125861277]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.02572730174601</vol_TIV>
- <vol_rel_CGW>[0.504388241154002 6.68576598638916 4.31918485291661 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04782274672416</vol_rel_WMH>
- <surf_TSA>8.62072790969645</surf_TSA>
- <SQR>5.48785277737558</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.158154606819153 1 1 11172.0881206334 0.51567539516965]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0416431874036789 0.0406181886792183 0.117494352161884]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[848.758619177973 436.190206397842 346.049900080982 3245.21479444889 1876.28175419422 7253.7296309232]</SPMvols0>
- <SPMvols1>[729.003881345251 405.807359596841 197.649668669595 4127.19349945854 1640.36331311377 6171.34676719255]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[21.8426990509033 47.456901550293 69.0726013183594]</T3th>
- <Tth>
- <T3th>[0 0 3.116459608078 21.8426990509033 47.456901550293 69.0726013183594 92.6875534057617 259.984375]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0194705370813608 0.0665944144129753 0.0729763060808182 0 0]</dtc>
- <ll>[0.0825765975335447 0 0.0825765975335447 0;0.198603745697498 0.0092055708849702 0.207809316582468 1963.06958007812;0.198603745697498 0.0092055708849702 0.207809316582468 1963.06958007812]</ll>
- <rmsdtc>[0.0415596812963486 0.0881871357560158 0.098793551325798]</rmsdtc>
- <rmsgdt>[0.0294570401310921 0.0441471002995968 0.0547515451908112]</rmsgdt>
- <rmsdt>0.098793551325798</rmsdt>
- <dt>0.0729763060808182</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00873029232025146 0.0321871414780617 0.044018629938364 0.0531875118613243 0.0603809766471386 0.0674082711338997]</dtc>
- <ll>[0.0847670264893226 0 0.0847670264893226 0;0.223108043345543 0.0130597718253968 0.23616781517094 6684.970703125;0.207117395569339 0.0153332681814045 0.222450663750743 11035.537109375;0.187919913760164 0.0180367653639341 0.205956679124099 19448.5390625;0.17162321941312 0.0214897843659913 0.193113003779111 37593.21875;0.17162321941312 0.0214897843659913 0.193113003779111 37593.21875]</ll>
- <rmsdtc>[0.0101932799443603 0.0357843935489655 0.0553702712059021 0.0801689028739929 0.105843715369701 0.113491967320442]</rmsdtc>
- <rmsgdt>[0.00316022639162838 0.0124444905668497 0.0271731857210398 0.0474394150078297 0.0667193233966827 0.0733346790075302]</rmsgdt>
- <rmsdt>0.113491967320442</rmsdt>
- <dt>0.0674082711338997</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_25536/ds/sub-0934/sub-0934_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 151s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 11s</item>
- <item>Estimate background 13s</item>
- <item>Initial correction 25s</item>
- <item>Refine background 6s</item>
- <item>Final correction 12s</item>
- <item>Final scaling 9s</item>
- <item>87s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 28s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 116s</item>
- <item>SPM preprocessing 1 (estimate 2): 95s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 30s</item>
- <item>Update Segmentation 30s</item>
- <item>Update Skull-Stripping 69s</item>
- <item>Update probability maps 15s</item>
- <item>144s</item>
- <item>Global intensity correction: 27s</item>
- <item>SANLM denoising after intensity normalization (medium): 20s</item>
- <item>Fast Optimized Shooting registration 49s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 6s</item>
- <item>Prepare partitions 9s</item>
- <item>Prepare segments (LASmod = 1.19) 23s</item>
- <item>Estimate local tissue thresholds (WM) 34s</item>
- <item>Estimate local tissue thresholds (GM) 48s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 72s</item>
- <item>199s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 13s</item>
- <item>Major structures 5s</item>
- <item>Ventricle detection 22s</item>
- <item>Blood vessel detection 15s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 39s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 5s</item>
- <item>Final corrections 8s</item>
- <item>110s</item>
- <item>Blood vessel correction (BVCstr=0.50): 3s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 46s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>17s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0848 0.0000 0.0848 | 32.0000</item>
- <item>2 | 2.50 | 0.0824 0.0011 0.0835 | 29.4886</item>
- <item>3 | 2.50 | 0.0817 0.0016 0.0833 | 26.9772</item>
- <item>4 | 2.50 | 0.0814 0.0018 0.0832 | 24.6107</item>
- <item>5 | 2.50 | 0.0811 0.0019 0.0830 | 22.6548</item>
- <item>6 | 2.50 | 0.0809 0.0020 0.0829 | 20.6989</item>
- <item>7 | 2.50 | 0.0806 0.0021 0.0827 | 18.9688</item>
- <item>8 | 2.50 | 0.0804 0.0022 0.0826 | 17.4455</item>
- <item>9 | 2.50 | 0.0801 0.0022 0.0824 | 15.9223</item>
- <item>10 | 2.50 | 0.0799 0.0023 0.0822 | 14.6627</item>
- <item>11 | 2.50 | 0.0796 0.0024 0.0820 | 13.4764</item>
- <item>12 | 2.50 | 0.0793 0.0024 0.0818 | 12.3015</item>
- <item>13 | 2.50 | 0.0791 0.0025 0.0816 | 11.3776</item>
- <item>14 | 2.50 | 0.0788 0.0026 0.0813 | 10.4537</item>
- <item>15 | 2.25 | 0.0781 0.0026 0.0807 | 9.5920</item>
- <item>16 | 2.25 | 0.0754 0.0039 0.0793 | 8.8725</item>
- <item>17 | 2.25 | 0.0744 0.0044 0.0787 | 8.1530</item>
- <item>29 | 2.00 | 0.0761 0.0020 0.0781 | 3.3283</item>
- <item>30 | 2.00 | 0.0708 0.0042 0.0750 | 3.1221</item>
- <item>31 | 2.00 | 0.0690 0.0051 0.0742 | 2.9160</item>
- <item>43 | 1.75 | 0.0683 0.0029 0.0712 | 1.5785</item>
- <item>44 | 1.75 | 0.0640 0.0052 0.0692 | 1.5194</item>
- <item>45 | 1.75 | 0.0626 0.0060 0.0687 | 1.4626</item>
- <item>57 | 1.50 | 0.0615 0.0043 0.0658 | 1.0900</item>
- <item>58 | 1.50 | 0.0582 0.0065 0.0647 | 1.0730</item>
- <item>59 | 1.50 | 0.0572 0.0072 0.0644 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 211s</item>
- <item>Prepare output 17s</item>
- <item>228s</item>
- <item>Jacobian determinant (RMS): 0.010 0.036 0.055 0.080 0.106 | 0.113492</item>
- <item>Template Matching: 0.085 0.223 0.207 0.188 0.172 | 0.171623</item>
- <item>Write result maps: 74s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 40s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 60s</item>
- <item>127s</item>
- <item>Create initial surface 107s</item>
- <item>Topology correction: 117s</item>
- <item>Surface refinement: 105s</item>
- <item>Reduction of surface collisions with optimization: 77s</item>
- <item>Spherical mapping with areal smoothing 109s</item>
- <item>Spherical registration 344s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 40s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 58s</item>
- <item>125s</item>
- <item>Create initial surface 104s</item>
- <item>Topology correction: 121s</item>
- <item>Surface refinement: 125s</item>
- <item>Reduction of surface collisions with optimization: 79s</item>
- <item>Spherical mapping with areal smoothing 108s</item>
- <item>Spherical registration 343s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4180 0.5988 mm</item>
- <item>Surface intensity / position RMSE: 0.0732 / 0.0767</item>
- <item>Euler number / defect number / defect size: 38.0 / 26.0 / 1.12%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_25536/ds/sub-0934/surf/lh.thickness.sub-0934_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_25536/ds/sub-0934/surf/rh.thickness.sub-0934_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_25536/ds/sub-0934/sub-0934_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 2124s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 16s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 60s</item>
- <item>ROI estimation of 'lpba40' atlas 19s</item>
- <item>ROI estimation of 'hammers' atlas 44s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 14s</item>
- <item>ROI estimation of 'aal3' atlas 22s</item>
- <item>ROI estimation of 'mori' atlas 34s</item>
- <item>ROI estimation of 'anatomy3' atlas 49s</item>
- <item>ROI estimation of 'julichbrain' atlas 68s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 26s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 96s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 165s</item>
- <item>Write results 167s</item>
- <item>659s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_25536/ds/sub-0934/report/catreport_sub-0934_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 72 minute(s) and 39 second(s).</item>
- <item>Image Quality Rating (IQR): 82.26% (B-)</item>
- <item>GM volume (GMV): 49.20% (672.60 / 1367.11 ml)</item>
- <item>GM thickness (GMT): 2.42 0.60 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_25536/ds/sub-0934/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_25536/ds/sub-0934/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_25536/ds/sub-0934/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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