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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>1</td>
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- <td>1</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <res_BB>0</res_BB>
- <tissue_mn>[3.03600001335144 18.8890953063965 38.9945755004883 64.9345626831055]</tissue_mn>
- <tissue_mnr>[0.0467547625303268 0.290894329547882 0.600521147251129 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.56746447550948 10.9185056933033 8.0913833470919 5.35378036208543]</tissue_std>
- <tissue_stdr>[0.0576340481638908 0.176393538713455 0.130720064043999 0.0864928066730499]</tissue_stdr>
- <contrast>22.6958522796631</contrast>
- <contrastr>0.349518835544586</contrastr>
- <NCR>0.148178800940514</NCR>
- <ICR>0.473547399044037</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.875 1.80001831054688 1.875]</res_vx_vol>
- <res_RMS>1.85034374448858</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.6219425201416 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.84055089950562</contrastr>
- <NCR>2.4582085609436</NCR>
- <ICR>1.63429415225983</ICR>
- <SurfaceEulerNumber>2.63265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.22269506039104</SurfaceDefectArea>
- <SurfaceDefectNumber>2.375</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.54057288169861</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.56416308879852</SurfacePositionRMSE>
- <IQR>2.28199468478722</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-151006</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>34</SurfaceEulerNumber>
- <SurfaceDefectArea>0.890780241564167</SurfaceDefectArea>
- <SurfaceDefectNumber>27.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0770286470651627</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0782081559300423</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>34</EC_abs>
- <defect_size>0.890780241564167</defect_size>
- <vol_abs_CGW>[159.887843473361 762.625971448492 602.348553469935 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.730837627403876</vol_abs_WMH>
- <vol_rel_WMH>0.000479281043688331</vol_rel_WMH>
- <surf_TSA>2029.27663659394</surf_TSA>
- <vol_TIV>1524.86236839179</vol_TIV>
- <vol_rel_CGW>[0.104853950617188 0.50012774087461 0.395018308508202 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.64559249128033 0.63472891884735]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.66919755935669 0.797735801778088 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.03600463541066 0.27458635888468 0.290528339077258;2.68688726787615 0.183964761500419 0.426331866234903;3.34988110536245 0.273977992758086 0.283139794687839]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.866208210506937 0.361123886120973 0.658505657432696;4.22152923938377 0.277431776440998 0.341494342567304]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.36254293142297</vol_TIV>
- <vol_rel_CGW>[0.5 6.83203557605262 4.94429433383984 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04792810436883</vol_rel_WMH>
- <surf_TSA>8.62236133766237</surf_TSA>
- <SQR>5.6378940772398</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.177460432052612 1 1 10916.0665506542 0.532582987268797]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0432370640337467 0.0412213429808617 0.279824465513229]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[944.076332288788 542.806340474399 295.756129075622 1194.54553411955 2256.22857332331 8704.47322825449]</SPMvols0>
- <SPMvols1>[814.060170095475 511.633583459258 158.827586364448 925.491863942848 1626.9256866092 9234.76812413182]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[20.717399597168 44.641300201416 64.7173004150391]</T3th>
- <Tth>
- <T3th>[0 1.30376434326172 3.97788262367249 20.717399597168 44.641300201416 64.7173004150391 86.7172546386719 288.625915527344]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0150140561163425 0.0475248396396637 0.0510418154299259 0 0]</dtc>
- <ll>[0.0770454483062756 0 0.0770454483062756 0;0.192173878828875 0.00698728034762489 0.1991611591765 1490.02355957031;0.192173878828875 0.00698728034762489 0.1991611591765 1490.02355957031]</ll>
- <rmsdtc>[0.0366185978055 0.0629617050290108 0.0723663717508316]</rmsdtc>
- <rmsgdt>[0.02716925740242 0.0374411232769489 0.0473814159631729]</rmsgdt>
- <rmsdt>0.0723663717508316</rmsdt>
- <dt>0.0510418154299259</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00558685278519988 0.0187483951449394 0.0291659794747829 0.0393173210322857 0.0457872487604618 0.0507669150829315]</dtc>
- <ll>[0.0799274808157972 0 0.0799274808157972 0;0.214834340659341 0.00879116395757021 0.223625504616911 4499.97705078125;0.197849083209673 0.0128726647994267 0.210721748009099 9264.611328125;0.178920445165969 0.0161783774467389 0.195098822612708 17444.69140625;0.166047461547212 0.0174601807246736 0.183507642271886 30544.01953125;0.166047461547212 0.0174601807246736 0.183507642271886 30544.01953125]</ll>
- <rmsdtc>[0.00672781933099031 0.0230481512844563 0.0389966517686844 0.0658860206604004 0.0928888991475105 0.0984385311603546]</rmsdtc>
- <rmsgdt>[0.00277007766999304 0.0106401713564992 0.025236064568162 0.0464619845151901 0.0656992420554161 0.070334754884243]</rmsgdt>
- <rmsdt>0.0984385311603546</rmsdt>
- <dt>0.0507669150829315</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_7765/ds/sub-0696/sub-0696_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 221s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 11s</item>
- <item>Estimate background 12s</item>
- <item>Initial correction 27s</item>
- <item>Refine background 6s</item>
- <item>Final correction 14s</item>
- <item>Final scaling 10s</item>
- <item>89s</item>
- <item>Correct center-of-mass 6s</item>
- <item>Affine registration 25s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 113s</item>
- <item>SPM preprocessing 1 (estimate 2): 77s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 28s</item>
- <item>Update Segmentation 29s</item>
- <item>Update Skull-Stripping 69s</item>
- <item>Update probability maps 14s</item>
- <item>141s</item>
- <item>Global intensity correction: 27s</item>
- <item>SANLM denoising after intensity normalization (medium): 23s</item>
- <item>Fast Optimized Shooting registration 47s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 6s</item>
- <item>Prepare partitions 9s</item>
- <item>Prepare segments (LASmod = 1.10) 24s</item>
- <item>Estimate local tissue thresholds (WM) 35s</item>
- <item>Estimate local tissue thresholds (GM) 49s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 59s</item>
- <item>188s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 12s</item>
- <item>Major structures 5s</item>
- <item>Ventricle detection 23s</item>
- <item>Blood vessel detection 17s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 44s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 6s</item>
- <item>Final corrections 7s</item>
- <item>117s</item>
- <item>Blood vessel correction (BVCstr=0.50): 3s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 47s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 7s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>17s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0799 0.0000 0.0799 | 32.0000</item>
- <item>2 | 2.50 | 0.0780 0.0009 0.0789 | 29.4886</item>
- <item>3 | 2.50 | 0.0775 0.0014 0.0788 | 26.9772</item>
- <item>4 | 2.50 | 0.0772 0.0015 0.0787 | 24.6107</item>
- <item>5 | 2.50 | 0.0770 0.0016 0.0786 | 22.6548</item>
- <item>6 | 2.50 | 0.0769 0.0016 0.0785 | 20.6989</item>
- <item>7 | 2.50 | 0.0767 0.0016 0.0784 | 18.9688</item>
- <item>8 | 2.50 | 0.0765 0.0017 0.0782 | 17.4455</item>
- <item>9 | 2.50 | 0.0764 0.0017 0.0781 | 15.9223</item>
- <item>10 | 2.50 | 0.0762 0.0018 0.0779 | 14.6627</item>
- <item>11 | 2.50 | 0.0760 0.0018 0.0778 | 13.4764</item>
- <item>12 | 2.50 | 0.0758 0.0018 0.0776 | 12.3015</item>
- <item>13 | 2.50 | 0.0756 0.0018 0.0775 | 11.3776</item>
- <item>14 | 2.50 | 0.0754 0.0019 0.0773 | 10.4537</item>
- <item>15 | 2.25 | 0.0739 0.0019 0.0758 | 9.5920</item>
- <item>16 | 2.25 | 0.0716 0.0029 0.0745 | 8.8725</item>
- <item>29 | 2.00 | 0.0731 0.0013 0.0744 | 3.3283</item>
- <item>30 | 2.00 | 0.0677 0.0034 0.0711 | 3.1221</item>
- <item>31 | 2.00 | 0.0659 0.0043 0.0702 | 2.9160</item>
- <item>43 | 1.75 | 0.0651 0.0025 0.0676 | 1.5785</item>
- <item>44 | 1.75 | 0.0610 0.0046 0.0656 | 1.5194</item>
- <item>45 | 1.75 | 0.0596 0.0054 0.0650 | 1.4626</item>
- <item>57 | 1.50 | 0.0583 0.0039 0.0622 | 1.0900</item>
- <item>58 | 1.50 | 0.0553 0.0058 0.0612 | 1.0730</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 167s</item>
- <item>Prepare output 16s</item>
- <item>184s</item>
- <item>Jacobian determinant (RMS): 0.007 0.023 0.039 0.066 0.093 | 0.098439</item>
- <item>Template Matching: 0.080 0.215 0.198 0.179 0.166 | 0.166047</item>
- <item>Write result maps: 44s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 39s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 62s</item>
- <item>130s</item>
- <item>Create initial surface 109s</item>
- <item>Topology correction: 118s</item>
- <item>Surface refinement: 86s</item>
- <item>Reduction of surface collisions with optimization: 86s</item>
- <item>Spherical mapping with areal smoothing 103s</item>
- <item>Spherical registration 339s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 41s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 60s</item>
- <item>128s</item>
- <item>Create initial surface 103s</item>
- <item>Topology correction: 113s</item>
- <item>Surface refinement: 89s</item>
- <item>Reduction of surface collisions with optimization: 82s</item>
- <item>Spherical mapping with areal smoothing 99s</item>
- <item>Spherical registration 338s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6455 0.6345 mm</item>
- <item>Surface intensity / position RMSE: 0.0770 / 0.0782</item>
- <item>Euler number / defect number / defect size: 34.0 / 27.5 / 0.89%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_7765/ds/sub-0696/surf/lh.thickness.sub-0696_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_7765/ds/sub-0696/surf/rh.thickness.sub-0696_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_7765/ds/sub-0696/sub-0696_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 10s</item>
- <item>Surface and thickness estimation takes: 2054s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 13s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 48s</item>
- <item>ROI estimation of 'lpba40' atlas 14s</item>
- <item>ROI estimation of 'hammers' atlas 34s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 12s</item>
- <item>ROI estimation of 'aal3' atlas 20s</item>
- <item>ROI estimation of 'mori' atlas 30s</item>
- <item>ROI estimation of 'anatomy3' atlas 43s</item>
- <item>ROI estimation of 'julichbrain' atlas 57s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 39s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 91s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s</item>
- <item>Write results 141s</item>
- <item>568s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_7765/ds/sub-0696/report/catreport_sub-0696_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 69 minute(s) and 13 second(s).</item>
- <item>Image Quality Rating (IQR): 82.18% (B-)</item>
- <item>GM volume (GMV): 50.01% (762.63 / 1524.86 ml)</item>
- <item>GM thickness (GMT): 2.65 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_7765/ds/sub-0696/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_7765/ds/sub-0696/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_7765/ds/sub-0696/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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