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- <parameter>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <LASstr>0.5</LASstr>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
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- <print>2</print>
- <fontsize>10</fontsize>
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- <td>0</td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <tr>
- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <LAB>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- </shootingtpms>
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- <res_BB>0</res_BB>
- <tissue_mn>[11.1440000534058 77.1482009887695 151.252517700195 254.96501159668]</tissue_mn>
- <tissue_mnr>[0.0437079593539238 0.302583485841751 0.59322851896286 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[19.1293754774752 30.8388558600595 31.4334959922232 23.3040408319066]</tissue_std>
- <tissue_stdr>[0.0784566327929497 0.126481533050537 0.128920376300812 0.0955784767866135]</tissue_stdr>
- <contrast>88.7942962646484</contrast>
- <contrastr>0.348260700702667</contrastr>
- <NCR>0.163113474845886</NCR>
- <ICR>0.469838529825211</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.80000305175781 1.875 1.875]</res_vx_vol>
- <res_RMS>1.8503387965755</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.85942268371582</contrastr>
- <NCR>2.67260217666626</NCR>
- <ICR>1.62509560585022</ICR>
- <SurfaceEulerNumber>2.02040816326531</SurfaceEulerNumber>
- <SurfaceDefectArea>1.20892243866455</SurfaceDefectArea>
- <SurfaceDefectNumber>1.8</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.54819977283478</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.52349126338959</SurfacePositionRMSE>
- <IQR>2.46659692580582</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-192513</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>0.835689754658209</SurfaceDefectArea>
- <SurfaceDefectNumber>16</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.077409990131855</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0761745646595955</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>22</EC_abs>
- <defect_size>0.835689754658209</defect_size>
- <vol_abs_CGW>[176.269770932767 642.473183585134 416.098536802916 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.592446891393732</vol_abs_WMH>
- <vol_rel_WMH>0.000479775659918939</vol_rel_WMH>
- <surf_TSA>1699.40808049947</surf_TSA>
- <vol_TIV>1234.84149132082</vol_TIV>
- <vol_rel_CGW>[0.142746880609126 0.520287978741246 0.336965140649628 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.56671854327947 0.632083799227671]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.58096575737 0.775802741148405 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.93863204009155 0.262388158803128 0.284735436910766;2.58336935561064 0.180630964797284 0.416014876021098;3.23122312424525 0.274803267082001 0.299249687068136]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.871009218147715 0.332653944312505 0.579202064738144;4.18897645411941 0.354507586822441 0.420797935261856]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.6229544599865</vol_TIV>
- <vol_rel_CGW>[0.5 7.19410881359996 3.90167278465568 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04797756599189</vol_rel_WMH>
- <surf_TSA>8.5009460208577</surf_TSA>
- <SQR>5.88857993177528</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.127037239074707 1 1 10861.0719003864 0.498955951347425]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0469184294342995 0.0462147891521454 0.244852989912033]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[784.316273792745 372.693348208377 312.230970653409 878.821366233466 1966.70342618152 8681.23225324505]</SPMvols0>
- <SPMvols1>[675.637171682365 345.591673813015 180.042760555665 754.892468277496 1481.2303004821 9004.31772931884]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[83.3767013549805 169.091094970703 246.025100708008]</T3th>
- <Tth>
- <T3th>[0 7.20268249511719 15.6436767578125 83.3767013549805 169.091094970703 246.025100708008 327.349304199219 787.383972167969]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0200038813054562 0.0724575445055962 0.0805620551109314 0 0]</dtc>
- <ll>[0.0827956182472989 0 0.0827956182472989 0;0.195544953821372 0.00984275927778338 0.205387713099156 2098.94873046875;0.195544953821372 0.00984275927778338 0.205387713099156 2098.94873046875]</ll>
- <rmsdtc>[0.0419717468321323 0.0991466864943504 0.111553005874157]</rmsdtc>
- <rmsgdt>[0.0296203326433897 0.0453098081052303 0.056595966219902]</rmsgdt>
- <rmsdt>0.111553005874157</rmsdt>
- <dt>0.0805620551109314</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00934135355055332 0.0360519662499428 0.0492532961070538 0.05788554251194 0.0645516812801361 0.0732793062925339]</dtc>
- <ll>[0.0846818900809024 0 0.0846818900809024 0;0.221593269230769 0.0149532566391941 0.236546525869963 7654.1982421875;0.204191789563047 0.0168282210887827 0.22102001065183 12111.47265625;0.184285930984946 0.0189100738264557 0.203196004811402 20390.203125;0.167899896418847 0.0220060578289516 0.189905954247799 38496.36328125;0.167899896418847 0.0220060578289516 0.189905954247799 38496.36328125]</ll>
- <rmsdtc>[0.0111675579100847 0.0409439280629158 0.0640980675816536 0.0911725834012032 0.116706348955631 0.124414190649986]</rmsdtc>
- <rmsgdt>[0.00322640943340957 0.0128551404923201 0.0295216292142868 0.0513508431613445 0.0708842948079109 0.0771753415465355]</rmsgdt>
- <rmsdt>0.124414190649986</rmsdt>
- <dt>0.0732793062925339</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_5961/ds/sub-0584/sub-0584_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 116s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 10s</item>
- <item>Initial correction 14s</item>
- <item>Refine background 4s</item>
- <item>Final correction 7s</item>
- <item>Final scaling 7s</item>
- <item>58s</item>
- <item>Correct center-of-mass 6s</item>
- <item>Affine registration 16s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 80s</item>
- <item>SPM preprocessing 1 (estimate 2): 66s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 20s</item>
- <item>Update Segmentation 20s</item>
- <item>Update Skull-Stripping 49s</item>
- <item>Update probability maps 11s</item>
- <item>101s</item>
- <item>Global intensity correction: 21s</item>
- <item>SANLM denoising after intensity normalization (medium): 20s</item>
- <item>Fast Optimized Shooting registration 35s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.10) 15s</item>
- <item>Estimate local tissue thresholds (WM) 22s</item>
- <item>Estimate local tissue thresholds (GM) 31s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 50s</item>
- <item>129s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 16s</item>
- <item>Blood vessel detection 10s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 29s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 6s</item>
- <item>78s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 35s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0847 0.0000 0.0847 | 32.0000</item>
- <item>2 | 2.50 | 0.0819 0.0012 0.0831 | 29.4886</item>
- <item>3 | 2.50 | 0.0811 0.0018 0.0830 | 26.9772</item>
- <item>4 | 2.50 | 0.0808 0.0020 0.0828 | 24.6107</item>
- <item>5 | 2.50 | 0.0805 0.0022 0.0826 | 22.6548</item>
- <item>6 | 2.50 | 0.0802 0.0023 0.0824 | 20.6989</item>
- <item>7 | 2.50 | 0.0799 0.0023 0.0823 | 18.9688</item>
- <item>8 | 2.50 | 0.0796 0.0024 0.0821 | 17.4455</item>
- <item>9 | 2.50 | 0.0793 0.0025 0.0818 | 15.9223</item>
- <item>10 | 2.50 | 0.0790 0.0026 0.0816 | 14.6627</item>
- <item>11 | 2.50 | 0.0787 0.0027 0.0814 | 13.4764</item>
- <item>12 | 2.50 | 0.0784 0.0027 0.0811 | 12.3015</item>
- <item>13 | 2.50 | 0.0781 0.0028 0.0809 | 11.3776</item>
- <item>14 | 2.50 | 0.0778 0.0029 0.0807 | 10.4537</item>
- <item>15 | 2.25 | 0.0783 0.0030 0.0813 | 9.5920</item>
- <item>16 | 2.25 | 0.0752 0.0044 0.0796 | 8.8725</item>
- <item>17 | 2.25 | 0.0739 0.0050 0.0788 | 8.1530</item>
- <item>29 | 2.00 | 0.0757 0.0023 0.0780 | 3.3283</item>
- <item>30 | 2.00 | 0.0701 0.0047 0.0747 | 3.1221</item>
- <item>31 | 2.00 | 0.0681 0.0056 0.0737 | 2.9160</item>
- <item>43 | 1.75 | 0.0672 0.0032 0.0705 | 1.5785</item>
- <item>44 | 1.75 | 0.0629 0.0055 0.0684 | 1.5194</item>
- <item>45 | 1.75 | 0.0614 0.0063 0.0677 | 1.4626</item>
- <item>57 | 1.50 | 0.0602 0.0046 0.0648 | 1.0900</item>
- <item>58 | 1.50 | 0.0570 0.0067 0.0637 | 1.0730</item>
- <item>59 | 1.50 | 0.0560 0.0073 0.0633 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 163s</item>
- <item>Prepare output 11s</item>
- <item>174s</item>
- <item>Jacobian determinant (RMS): 0.011 0.041 0.064 0.091 0.117 | 0.124414</item>
- <item>Template Matching: 0.085 0.222 0.204 0.184 0.168 | 0.167900</item>
- <item>Write result maps: 31s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 25s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 39s</item>
- <item>82s</item>
- <item>Create initial surface 73s</item>
- <item>Topology correction: 68s</item>
- <item>Surface refinement: 57s</item>
- <item>Reduction of surface collisions with optimization: 56s</item>
- <item>Spherical mapping with areal smoothing 68s</item>
- <item>Spherical registration 324s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 22s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 39s</item>
- <item>79s</item>
- <item>Create initial surface 73s</item>
- <item>Topology correction: 70s</item>
- <item>Surface refinement: 65s</item>
- <item>Reduction of surface collisions with optimization: 54s</item>
- <item>Spherical mapping with areal smoothing 67s</item>
- <item>Spherical registration 295s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5667 0.6321 mm</item>
- <item>Surface intensity / position RMSE: 0.0774 / 0.0762</item>
- <item>Euler number / defect number / defect size: 22.0 / 16.0 / 0.84%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_5961/ds/sub-0584/surf/lh.thickness.sub-0584_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_5961/ds/sub-0584/surf/rh.thickness.sub-0584_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_5961/ds/sub-0584/sub-0584_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1524s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 10s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 38s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 27s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 9s</item>
- <item>ROI estimation of 'aal3' atlas 15s</item>
- <item>ROI estimation of 'mori' atlas 22s</item>
- <item>ROI estimation of 'anatomy3' atlas 32s</item>
- <item>ROI estimation of 'julichbrain' atlas 42s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 66s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 100s</item>
- <item>Write results 100s</item>
- <item>419s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_5961/ds/sub-0584/report/catreport_sub-0584_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 50 minute(s) and 43 second(s).</item>
- <item>Image Quality Rating (IQR): 80.33% (B-)</item>
- <item>GM volume (GMV): 52.03% (642.47 / 1234.84 ml)</item>
- <item>GM thickness (GMT): 2.57 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_5961/ds/sub-0584/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_5961/ds/sub-0584/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_5961/ds/sub-0584/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|