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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>[false]</td>
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- <td>1</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <res_BB>0</res_BB>
- <tissue_mn>[2.71000003814697 14.5859622955322 31.8373603820801 53.4451522827148]</tissue_mn>
- <tissue_mnr>[0.0507061891257763 0.272914588451385 0.595701575279236 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[0.985565513769707 9.04150672684418 6.79607520509363 4.41743659667457]</tissue_std>
- <tissue_stdr>[0.0194256938993931 0.178209900856018 0.133952006697655 0.0870685577392578]</tissue_stdr>
- <contrast>18.6071720123291</contrast>
- <contrastr>0.348154544830322</contrastr>
- <NCR>0.170030146837234</NCR>
- <ICR>0.508894264698029</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.875 1.79998779296875 1.875]</res_vx_vol>
- <res_RMS>1.85033384869114</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.61074447631836 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.62357843109718 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.86101508140564</contrastr>
- <NCR>2.7718939781189</NCR>
- <ICR>1.72196006774902</ICR>
- <SurfaceEulerNumber>3.85714285714286</SurfaceEulerNumber>
- <SurfaceDefectArea>1.35546255033026</SurfaceDefectArea>
- <SurfaceDefectNumber>2.6</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.60013794898987</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.70027375221252</SurfacePositionRMSE>
- <IQR>2.55415404532145</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-201722</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>58</SurfaceEulerNumber>
- <SurfaceDefectArea>1.42185020132106</SurfaceDefectArea>
- <SurfaceDefectNumber>32</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0800068974494934</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0850136876106262</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>58</EC_abs>
- <defect_size>1.42185020132106</defect_size>
- <vol_abs_CGW>[169.841262474691 793.034958362965 538.841251974106 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.53297788500786</vol_abs_WMH>
- <vol_rel_WMH>0.0010208164403505</vol_rel_WMH>
- <surf_TSA>1976.16564391743</surf_TSA>
- <vol_TIV>1501.71747281176</vol_TIV>
- <vol_rel_CGW>[0.113098013141371 0.528085324117668 0.358816662740961 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.69351360018182 0.674980414127043]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.70654940605164 0.869844538216663 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.99009417384527 0.302243244425045 0.269415357766143;2.70480087064137 0.201027940983041 0.437960539073105;3.43193760798042 0.303378596309164 0.292624103160752]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.814007335269461 0.329145068937123 0.611803740197064;4.4198442917048 0.308910031827924 0.388196259802936]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.2425615762172</vol_TIV>
- <vol_rel_CGW>[0.5 7.33414734406732 4.2941210980776 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.10208164403505</vol_rel_WMH>
- <surf_TSA>8.62035783786487</surf_TSA>
- <SQR>6.00790362967451</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.184123873710632 1 1 10827.4512781799 0.540711413899637]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0477271229028702 0.0462881959974766 0.272154450416565]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[951.5746881066 491.247821063434 316.482417350587 1156.41817012205 2462.78044687008 8732.88081559697]</SPMvols0>
- <SPMvols1>[819.878307223951 461.115736923043 167.058001363803 947.863100455894 1662.41167565114 9214.43818399608]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[16.3423004150391 35.8292007446289 52.978099822998]</T3th>
- <Tth>
- <T3th>[0 2.24240112304688 3.05891275405884 16.3423004150391 35.8292007446289 52.978099822998 71.2959976196289 229.163192749023]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0154880145564675 0.0564820282161236 0.0618098564445972 0 0]</dtc>
- <ll>[0.0817777855771215 0 0.0817777855771215 0;0.199445470326803 0.0090997473818629 0.208545217708665 1940.5029296875;0.199445470326803 0.0090997473818629 0.208545217708665 1940.5029296875]</ll>
- <rmsdtc>[0.0373817048966885 0.078541599214077 0.0898040682077408]</rmsdtc>
- <rmsgdt>[0.0274534747004509 0.0424898043274879 0.0537302605807781]</rmsgdt>
- <rmsdt>0.0898040682077408</rmsdt>
- <dt>0.0618098564445972</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00656807981431484 0.0244188364595175 0.0358378849923611 0.0455884598195553 0.0536508411169052 0.0612441301345825]</dtc>
- <ll>[0.083521901210185 0 0.083521901210185 0;0.224562026862027 0.0123181509462759 0.236880177808303 6305.353515625;0.207814006679061 0.0161772906862398 0.2239912973653 11642.990234375;0.186975100554406 0.0198937313735542 0.20686883192796 21450.853515625;0.169643308840468 0.023939752654267 0.193583061494735 41879.078125;0.169643308840468 0.023939752654267 0.193583061494735 41879.078125]</ll>
- <rmsdtc>[0.00818768050521612 0.0310221537947655 0.0508299507200718 0.0820033326745033 0.114527083933353 0.123603641986847]</rmsdtc>
- <rmsgdt>[0.00296792760491371 0.0123735684901476 0.0302818547934294 0.0559501834213734 0.08010233938694 0.0873792394995689]</rmsgdt>
- <rmsdt>0.123603641986847</rmsdt>
- <dt>0.0612441301345825</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_19051/ds/sub-0503/sub-0503_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 181s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 11s</item>
- <item>Estimate background 14s</item>
- <item>Initial correction 28s</item>
- <item>Refine background 6s</item>
- <item>Final correction 13s</item>
- <item>Final scaling 10s</item>
- <item>93s</item>
- <item>Correct center-of-mass 6s</item>
- <item>Affine registration 31s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 121s</item>
- <item>SPM preprocessing 1 (estimate 2): 101s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 29s</item>
- <item>Update Segmentation 31s</item>
- <item>Update Skull-Stripping 68s</item>
- <item>Update probability maps 15s</item>
- <item>144s</item>
- <item>Global intensity correction: 27s</item>
- <item>SANLM denoising after intensity normalization (medium): 16s</item>
- <item>Fast Optimized Shooting registration 49s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 6s</item>
- <item>Prepare partitions 6s</item>
- <item>Prepare segments (LASmod = 1.11) 24s</item>
- <item>Estimate local tissue thresholds (WM) 36s</item>
- <item>Estimate local tissue thresholds (GM) 52s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 55s</item>
- <item>185s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 14s</item>
- <item>Major structures 6s</item>
- <item>Ventricle detection 24s</item>
- <item>Blood vessel detection 17s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 44s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 3s</item>
- <item>Side alignment 6s</item>
- <item>Final corrections 8s</item>
- <item>120s</item>
- <item>Blood vessel correction (BVCstr=0.50): 3s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 48s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 7s</item>
- <item>Level 1 cleanup (brain masking) 5s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 5s</item>
- <item>18s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0835 0.0000 0.0835 | 32.0000</item>
- <item>2 | 2.50 | 0.0810 0.0011 0.0821 | 29.4886</item>
- <item>3 | 2.50 | 0.0803 0.0017 0.0819 | 26.9772</item>
- <item>4 | 2.50 | 0.0799 0.0019 0.0818 | 24.6107</item>
- <item>5 | 2.50 | 0.0796 0.0020 0.0816 | 22.6548</item>
- <item>6 | 2.50 | 0.0794 0.0021 0.0814 | 20.6989</item>
- <item>7 | 2.50 | 0.0791 0.0021 0.0813 | 18.9688</item>
- <item>8 | 2.50 | 0.0789 0.0022 0.0811 | 17.4455</item>
- <item>9 | 2.50 | 0.0786 0.0023 0.0809 | 15.9223</item>
- <item>10 | 2.50 | 0.0783 0.0023 0.0807 | 14.6627</item>
- <item>11 | 2.50 | 0.0781 0.0024 0.0805 | 13.4764</item>
- <item>12 | 2.50 | 0.0778 0.0024 0.0802 | 12.3015</item>
- <item>13 | 2.50 | 0.0775 0.0025 0.0800 | 11.3776</item>
- <item>14 | 2.50 | 0.0772 0.0026 0.0798 | 10.4537</item>
- <item>15 | 2.25 | 0.0778 0.0026 0.0805 | 9.5920</item>
- <item>16 | 2.25 | 0.0749 0.0041 0.0790 | 8.8725</item>
- <item>29 | 2.00 | 0.0775 0.0019 0.0794 | 3.3283</item>
- <item>30 | 2.00 | 0.0714 0.0044 0.0758 | 3.1221</item>
- <item>31 | 2.00 | 0.0693 0.0054 0.0747 | 2.9160</item>
- <item>43 | 1.75 | 0.0688 0.0031 0.0719 | 1.5785</item>
- <item>44 | 1.75 | 0.0640 0.0057 0.0697 | 1.5194</item>
- <item>45 | 1.75 | 0.0623 0.0066 0.0690 | 1.4626</item>
- <item>57 | 1.50 | 0.0614 0.0048 0.0662 | 1.0900</item>
- <item>58 | 1.50 | 0.0577 0.0072 0.0649 | 1.0730</item>
- <item>59 | 1.50 | 0.0565 0.0080 0.0645 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 196s</item>
- <item>Prepare output 16s</item>
- <item>212s</item>
- <item>Jacobian determinant (RMS): 0.008 0.031 0.051 0.082 0.115 | 0.123604</item>
- <item>Template Matching: 0.084 0.225 0.208 0.187 0.170 | 0.169643</item>
- <item>Write result maps: 45s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 38s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 62s</item>
- <item>129s</item>
- <item>Create initial surface 107s</item>
- <item>Topology correction: 121s</item>
- <item>Surface refinement: 85s</item>
- <item>Reduction of surface collisions with optimization: 84s</item>
- <item>Spherical mapping with areal smoothing 98s</item>
- <item>Spherical registration 317s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 41s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 60s</item>
- <item>130s</item>
- <item>Create initial surface 103s</item>
- <item>Topology correction: 112s</item>
- <item>Surface refinement: 97s</item>
- <item>Reduction of surface collisions with optimization: 84s</item>
- <item>Spherical mapping with areal smoothing 108s</item>
- <item>Spherical registration 308s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6934 0.6748 mm</item>
- <item>Surface intensity / position RMSE: 0.0800 / 0.0850</item>
- <item>Euler number / defect number / defect size: 58.0 / 32.0 / 1.42%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19051/ds/sub-0503/surf/lh.thickness.sub-0503_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19051/ds/sub-0503/surf/rh.thickness.sub-0503_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_19051/ds/sub-0503/sub-0503_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 2010s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 13s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 47s</item>
- <item>ROI estimation of 'lpba40' atlas 14s</item>
- <item>ROI estimation of 'hammers' atlas 33s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 12s</item>
- <item>ROI estimation of 'aal3' atlas 19s</item>
- <item>ROI estimation of 'mori' atlas 28s</item>
- <item>ROI estimation of 'anatomy3' atlas 41s</item>
- <item>ROI estimation of 'julichbrain' atlas 55s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 37s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 88s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 132s</item>
- <item>Write results 133s</item>
- <item>544s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_19051/ds/sub-0503/report/catreport_sub-0503_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 68 minute(s) and 5 second(s).</item>
- <item>Image Quality Rating (IQR): 79.46% (C+)</item>
- <item>GM volume (GMV): 52.81% (793.03 / 1501.72 ml)</item>
- <item>GM thickness (GMT): 2.69 0.67 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_19051/ds/sub-0503/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_19051/ds/sub-0503/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_19051/ds/sub-0503/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|