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- <F>/var/lib/condor/execute/dir_13235/ds/sub-24/sub-24_T1w.nii</F>
- <Fm>/var/lib/condor/execute/dir_13235/ds/sub-24/mri/msub-24_T1w.nii</Fm>
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- <fnames>..13235/ds/sub-24/sub-24_T1w</fnames>
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- <parameter>
- <opts>
- <tpm>
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- </tpm>
- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <scale_cortex>0.7</scale_cortex>
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- <colormap>BCGWHw</colormap>
- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
- </tr>
- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
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- <LAB>
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- <HC>19</HC>
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- <PH>25</PH>
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- <shootingtpm>
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- <optimal>[1 0.3]</optimal>
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- <LASmyostr>0</LASmyostr>
- <pbtmethod>pbt2x</pbtmethod>
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- </shootingtpms>
- <templates>
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- </templates>
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- <tissue_mnr>[0.00892671011388302 0.180873140692711 0.619185864925385 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[14.2284759778294 202.296314224782 192.549689520511 112.895036232472]</tissue_std>
- <tissue_stdr>[0.0081717474386096 0.116183511912823 0.110585793852806 0.0648382604122162]</tissue_stdr>
- <contrast>626.294128417969</contrast>
- <contrastr>0.35648450255394</contrastr>
- <NCR>0.140517711639404</NCR>
- <ICR>0.346782118082047</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.73606586456299</contrastr>
- <NCR>2.3482301235199</NCR>
- <ICR>1.3198961019516</ICR>
- <SurfaceEulerNumber>1.91836734693878</SurfaceEulerNumber>
- <SurfaceDefectArea>1.11646091215013</SurfaceDefectArea>
- <SurfaceDefectNumber>1.725</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.2350013256073</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.20056056976318</SurfacePositionRMSE>
- <IQR>2.22014476319813</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220712-170518</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>20</SurfaceEulerNumber>
- <SurfaceDefectArea>0.465843648600521</SurfaceDefectArea>
- <SurfaceDefectNumber>14.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0617500655353069</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0600280314683914</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>20</EC_abs>
- <defect_size>0.465843648600521</defect_size>
- <vol_abs_CGW>[347.189745098039 874.893933333333 711.209007843137 0 0]</vol_abs_CGW>
- <vol_abs_WMH>2.5275137254902</vol_abs_WMH>
- <vol_rel_WMH>0.00130736217202619</vol_rel_WMH>
- <surf_TSA>2426.20244098693</surf_TSA>
- <vol_TIV>1933.29268627451</vol_TIV>
- <vol_rel_CGW>[0.17958467828639 0.452540859200823 0.367874462512787 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.55131882897678 0.604473465498182]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.53527402877808 0.761616391498786 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.98047647083695 0.252247859053767 0.304561421502013;2.5710600483991 0.171862245053726 0.443619394374503;3.22657813180207 0.275886413515606 0.251819184123484]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.92416888004375 0.337973455535913 0.527322834645669;4.23729355121163 0.370270699918007 0.472677165354331]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>5.48925521494223</vol_TIV>
- <vol_rel_CGW>[1.07515586002856 5.97738612070443 4.45679709972678 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.13073621720262</vol_rel_WMH>
- <surf_TSA>8.62399880689524</surf_TSA>
- <SQR>4.94416132348862</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.131468252702193 1 1 10017.937 0.463827545280742]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00858708750456572 0.0045748483389616 0.384672343730927]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[1052.50026666667 628.682145098039 832.8188 859.769882352941 2698.53831372549 6422.54323921569]</SPMvols0>
- <SPMvols1>[865.530788235294 597.092215686274 432.913858823529 1228.84965490196 2413.90841568627 5996.23245098039]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[446.135101318359 1178.19921875 1797.40197753906]</T3th>
- <Tth>
- <T3th>[0 0 27.2554569244385 446.135101318359 1178.19921875 1797.40197753906 2473.03540039062 5584.23046875]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0180685706436634 0.06301149725914 0.0686606168746948 0 0]</dtc>
- <ll>[0.0867025032669318 0 0.0867025032669318 0;0.214591384649563 0.00915262764957057 0.223744012299134 1951.77954101562;0.214591384649563 0.00915262764957057 0.223744012299134 1951.77954101562]</ll>
- <rmsdtc>[0.0417912118136883 0.0825518369674683 0.0926240012049675]</rmsdtc>
- <rmsgdt>[0.0306010227650404 0.0419380664825439 0.0524974167346954]</rmsgdt>
- <rmsdt>0.0926240012049675</rmsdt>
- <dt>0.0686606168746948</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00708295311778784 0.0261787492781878 0.0352959260344505 0.0439488440752029 0.0513401739299297 0.056566059589386]</dtc>
- <ll>[0.0852698718027083 0 0.0852698718027083 0;0.224188507326007 0.0129122119200244 0.237100719246032 6609.4384765625;0.209661816115335 0.0151867740368717 0.224848590152207 10930.103515625;0.190461523738908 0.0181832055420617 0.20864472928097 19606.44140625;0.173242550245719 0.02195890423488 0.195201454480599 38413.875;0.173242550245719 0.02195890423488 0.195201454480599 38413.875]</ll>
- <rmsdtc>[0.00845256727188826 0.0293985456228256 0.044742189347744 0.0674761235713959 0.0923150554299355 0.0993109941482544]</rmsdtc>
- <rmsgdt>[0.00288387574255466 0.0109037347137928 0.0250550080090761 0.0450448654592037 0.0646270290017128 0.0704457983374596]</rmsgdt>
- <rmsdt>0.0993109941482544</rmsdt>
- <dt>0.056566059589386</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_13235/ds/sub-24/sub-24_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 52s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 8s</item>
- <item>Initial correction 7s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 7s</item>
- <item>42s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 74s</item>
- <item>SPM preprocessing 1 (estimate 2): 72s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 17s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 48s</item>
- <item>Update probability maps 8s</item>
- <item>95s</item>
- <item>Global intensity correction: 16s</item>
- <item>SANLM denoising after intensity normalization (medium): 11s</item>
- <item>Fast Optimized Shooting registration 31s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 17s</item>
- <item>Estimate local tissue thresholds (WM) 20s</item>
- <item>Estimate local tissue thresholds (GM) 28s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 40s</item>
- <item>115s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 18s</item>
- <item>Blood vessel detection 12s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.10) 33s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 5s</item>
- <item>Final corrections 4s</item>
- <item>88s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 39s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>13s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0853 0.0000 0.0853 | 32.0000</item>
- <item>2 | 2.50 | 0.0828 0.0011 0.0839 | 29.4886</item>
- <item>3 | 2.50 | 0.0821 0.0017 0.0838 | 26.9772</item>
- <item>4 | 2.50 | 0.0817 0.0019 0.0836 | 24.6107</item>
- <item>5 | 2.50 | 0.0815 0.0020 0.0835 | 22.6548</item>
- <item>6 | 2.50 | 0.0812 0.0021 0.0833 | 20.6989</item>
- <item>7 | 2.50 | 0.0810 0.0022 0.0832 | 18.9688</item>
- <item>8 | 2.50 | 0.0807 0.0022 0.0830 | 17.4455</item>
- <item>9 | 2.50 | 0.0805 0.0023 0.0828 | 15.9223</item>
- <item>10 | 2.50 | 0.0802 0.0024 0.0826 | 14.6627</item>
- <item>11 | 2.50 | 0.0800 0.0024 0.0824 | 13.4764</item>
- <item>12 | 2.50 | 0.0797 0.0025 0.0821 | 12.3015</item>
- <item>13 | 2.50 | 0.0794 0.0025 0.0819 | 11.3776</item>
- <item>14 | 2.50 | 0.0791 0.0026 0.0817 | 10.4537</item>
- <item>15 | 2.25 | 0.0784 0.0026 0.0810 | 9.5920</item>
- <item>16 | 2.25 | 0.0757 0.0039 0.0796 | 8.8725</item>
- <item>17 | 2.25 | 0.0747 0.0043 0.0790 | 8.1530</item>
- <item>29 | 2.00 | 0.0770 0.0019 0.0789 | 3.3283</item>
- <item>30 | 2.00 | 0.0716 0.0042 0.0758 | 3.1221</item>
- <item>31 | 2.00 | 0.0699 0.0051 0.0749 | 2.9160</item>
- <item>43 | 1.75 | 0.0693 0.0028 0.0722 | 1.5785</item>
- <item>44 | 1.75 | 0.0649 0.0052 0.0701 | 1.5194</item>
- <item>45 | 1.75 | 0.0635 0.0061 0.0695 | 1.4626</item>
- <item>57 | 1.50 | 0.0623 0.0043 0.0666 | 1.0900</item>
- <item>58 | 1.50 | 0.0589 0.0066 0.0655 | 1.0730</item>
- <item>59 | 1.50 | 0.0577 0.0073 0.0651 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 163s</item>
- <item>Prepare output 11s</item>
- <item>173s</item>
- <item>Jacobian determinant (RMS): 0.008 0.029 0.045 0.067 0.092 | 0.099311</item>
- <item>Template Matching: 0.085 0.224 0.210 0.190 0.173 | 0.173243</item>
- <item>Write result maps: 24s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 51s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 55s</item>
- <item>135s</item>
- <item>Create initial surface 110s</item>
- <item>Topology correction: 119s</item>
- <item>Surface refinement: 96s</item>
- <item>Reduction of surface collisions with optimization: 99s</item>
- <item>Spherical mapping with areal smoothing 132s</item>
- <item>Spherical registration 295s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 49s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 53s</item>
- <item>127s</item>
- <item>Create initial surface 95s</item>
- <item>Topology correction: 106s</item>
- <item>Surface refinement: 102s</item>
- <item>Reduction of surface collisions with optimization: 91s</item>
- <item>Spherical mapping with areal smoothing 96s</item>
- <item>Spherical registration 286s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5513 0.6044 mm</item>
- <item>Surface intensity / position RMSE: 0.0618 / 0.0600</item>
- <item>Euler number / defect number / defect size: 20.0 / 14.5 / 0.47%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_13235/ds/sub-24/surf/lh.thickness.sub-24_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_13235/ds/sub-24/surf/rh.thickness.sub-24_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_13235/ds/sub-24/sub-24_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1991s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 26s</item>
- <item>ROI estimation of 'lpba40' atlas 8s</item>
- <item>ROI estimation of 'hammers' atlas 18s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 11s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 22s</item>
- <item>ROI estimation of 'julichbrain' atlas 30s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 48s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s</item>
- <item>Write results 72s</item>
- <item>299s</item>
- <item>Quality check: 6s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_13235/ds/sub-24/report/catreport_sub-24_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 53 minute(s) and 58 second(s).</item>
- <item>Image Quality Rating (IQR): 82.80% (B-)</item>
- <item>GM volume (GMV): 45.25% (874.89 / 1933.29 ml)</item>
- <item>GM thickness (GMT): 2.55 0.60 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_13235/ds/sub-24/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_13235/ds/sub-24/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_13235/ds/sub-24/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|