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- <parameter>
- <opts>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <mrf>1</mrf>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <templates>
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- <tissue_mnr>[0.0086421025916934 0.330712050199509 0.723720848560333 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[12.6071450706838 50.6103264173576 36.9871261582549 22.3094194002303]</tissue_std>
- <tissue_stdr>[0.0295912846922874 0.118791729211807 0.0868155732750893 0.0523643046617508]</tissue_stdr>
- <contrast>119.767822265625</contrast>
- <contrastr>0.278687626123428</contrastr>
- <NCR>0.137987926602364</NCR>
- <ICR>0.411951333284378</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999994657329 2 1.99999994657329]</res_vx_vol>
- <res_RMS>1.99999996438219</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62397956848145 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.90301895141602</contrastr>
- <NCR>2.31191396713257</NCR>
- <ICR>1.48152613639832</ICR>
- <SurfaceEulerNumber>1.51020408163265</SurfaceEulerNumber>
- <SurfaceDefectArea>1.113988028239</SurfaceDefectArea>
- <SurfaceDefectNumber>1.325</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.26258730888367</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.24835073947906</SurfacePositionRMSE>
- <IQR>2.19358017593476</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220712-163101</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>12</SurfaceEulerNumber>
- <SurfaceDefectArea>0.455952112955989</SurfaceDefectArea>
- <SurfaceDefectNumber>6.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0631293654441833</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0624175369739532</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>12</EC_abs>
- <defect_size>0.455952112955989</defect_size>
- <vol_abs_CGW>[243.739296756972 585.168890245533 472.939829586297 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.609607810505987</vol_abs_WMH>
- <vol_rel_WMH>0.00046826342456113</vol_rel_WMH>
- <surf_TSA>1653.56549348265</surf_TSA>
- <vol_TIV>1301.8480165888</vol_TIV>
- <vol_rel_CGW>[0.187225615932984 0.44949094117671 0.363283442890307 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.48641298047641 0.625148438295153]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.48905849456787 0.730688341706899 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.88392277421167 0.243033715356962 0.304689425453894;2.51387311517569 0.17728321690949 0.414482774072608;3.15169057672972 0.265351539542408 0.280827800473498]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.884379030774696 0.304900124755799 0.524115090043469;4.08068962162502 0.341576459884203 0.475884909956531]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.22610497008364</vol_TIV>
- <vol_rel_CGW>[1.21238534362399 5.92261029412194 4.37434344271384 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04682634245611</vol_rel_WMH>
- <surf_TSA>8.42531802220816</surf_TSA>
- <SQR>4.89494934543266</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.0738868171962557 1 13578 4604.43075400041 0.43807275132076]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0240908022969961 0.00630763778463006 0.477262705564499]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[704.796079920524 433.529878754668 473.792809932795 562.082220893088 1266.6687047464 2243.02745248358]</SPMvols0>
- <SPMvols1>[595.377156365769 407.695813470855 267.222091578409 620.177260920614 1179.98872507251 1901.41829037718]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[186.464492797852 321.848785400391 418.715606689453]</T3th>
- <Tth>
- <T3th>[0 85.4468078613281 13.6502475738525 186.464492797852 321.848785400391 418.715606689453 534.841186523438 1592.28796386719]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0217837914824486 0.0795999988913536 0.0881851091980934 0 0]</dtc>
- <ll>[0.0858708107266344 0 0.0858708107266344 0;0.197326495295384 0.011169415275876 0.20849591057126 2381.85546875;0.197326495295384 0.011169415275876 0.20849591057126 2381.85546875]</ll>
- <rmsdtc>[0.0461632460355759 0.104362778365612 0.115984000265598]</rmsdtc>
- <rmsgdt>[0.0328629873692989 0.0471266768872738 0.0581209175288677]</rmsgdt>
- <rmsdt>0.115984000265598</rmsdt>
- <dt>0.0881851091980934</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0103000607341528 0.0383443348109722 0.0544224083423615 0.0623379871249199 0.0665917694568634 0.0755147412419319]</dtc>
- <ll>[0.0855545064312583 0 0.0855545064312583 0;0.219286752136752 0.0157971153846154 0.235083867521368 8086.1484375;0.193719002357888 0.0182272629646477 0.211946265322535 13118.3798828125;0.17209354991134 0.0192874752671404 0.19138102517848 20797.14453125;0.15850174321592 0.0196511492391759 0.178152892455096 34376.796875;0.15850174321592 0.0196511492391759 0.178152892455096 34376.796875]</ll>
- <rmsdtc>[0.0119554623961449 0.0442986711859703 0.0664949119091034 0.093523234128952 0.117098450660706 0.122622303664684]</rmsdtc>
- <rmsgdt>[0.00350547325797379 0.0137748727574944 0.0297610182315111 0.0510385371744633 0.068689651787281 0.0729349926114082]</rmsgdt>
- <rmsdt>0.122622303664684</rmsdt>
- <dt>0.0755147412419319</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_32453/ds/sub-34/sub-34_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 36s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 3s</item>
- <item>Estimate background 5s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 3s</item>
- <item>22s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 7s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 57s</item>
- <item>SPM preprocessing 1 (estimate 2): 38s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 9s</item>
- <item>Update Segmentation 14s</item>
- <item>Update Skull-Stripping 23s</item>
- <item>Update probability maps 4s</item>
- <item>50s</item>
- <item>Global intensity correction: 8s</item>
- <item>SANLM denoising after intensity normalization (medium): 11s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 1s</item>
- <item>Prepare segments (LASmod = 1.00) 12s</item>
- <item>Estimate local tissue thresholds (WM) 11s</item>
- <item>Estimate local tissue thresholds (GM) 16s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 14s</item>
- <item>59s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 17s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 22s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 2s</item>
- <item>62s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 27s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>9s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0856 0.0000 0.0856 | 32.0000</item>
- <item>2 | 2.50 | 0.0823 0.0014 0.0837 | 29.4886</item>
- <item>3 | 2.50 | 0.0814 0.0021 0.0834 | 26.9772</item>
- <item>4 | 2.50 | 0.0809 0.0023 0.0832 | 24.6107</item>
- <item>5 | 2.50 | 0.0805 0.0025 0.0830 | 22.6548</item>
- <item>6 | 2.50 | 0.0802 0.0026 0.0828 | 20.6989</item>
- <item>7 | 2.50 | 0.0798 0.0027 0.0826 | 18.9688</item>
- <item>8 | 2.50 | 0.0795 0.0029 0.0823 | 17.4455</item>
- <item>9 | 2.50 | 0.0791 0.0029 0.0820 | 15.9223</item>
- <item>10 | 2.50 | 0.0787 0.0031 0.0818 | 14.6627</item>
- <item>11 | 2.50 | 0.0783 0.0032 0.0815 | 13.4764</item>
- <item>12 | 2.50 | 0.0779 0.0033 0.0812 | 12.3015</item>
- <item>13 | 2.50 | 0.0775 0.0034 0.0809 | 11.3776</item>
- <item>14 | 2.50 | 0.0771 0.0035 0.0806 | 10.4537</item>
- <item>15 | 2.25 | 0.0765 0.0036 0.0801 | 9.5920</item>
- <item>16 | 2.25 | 0.0731 0.0053 0.0784 | 8.8725</item>
- <item>29 | 2.00 | 0.0736 0.0024 0.0759 | 3.3283</item>
- <item>30 | 2.00 | 0.0669 0.0050 0.0719 | 3.1221</item>
- <item>31 | 2.00 | 0.0646 0.0061 0.0706 | 2.9160</item>
- <item>43 | 1.75 | 0.0629 0.0035 0.0664 | 1.5785</item>
- <item>44 | 1.75 | 0.0588 0.0057 0.0644 | 1.5194</item>
- <item>45 | 1.75 | 0.0574 0.0064 0.0638 | 1.4626</item>
- <item>57 | 1.50 | 0.0557 0.0047 0.0604 | 1.0900</item>
- <item>58 | 1.50 | 0.0528 0.0066 0.0594 | 1.0730</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 134s</item>
- <item>Prepare output 8s</item>
- <item>142s</item>
- <item>Jacobian determinant (RMS): 0.012 0.044 0.066 0.094 0.117 | 0.122622</item>
- <item>Template Matching: 0.086 0.219 0.194 0.172 0.159 | 0.158502</item>
- <item>Write result maps: 13s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 41s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 39s</item>
- <item>98s</item>
- <item>Create initial surface 75s</item>
- <item>Topology correction: 70s</item>
- <item>Surface refinement: 65s</item>
- <item>Reduction of surface collisions with optimization: 53s</item>
- <item>Spherical mapping with areal smoothing 77s</item>
- <item>Spherical registration 318s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 36s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 39s</item>
- <item>93s</item>
- <item>Create initial surface 74s</item>
- <item>Topology correction: 67s</item>
- <item>Surface refinement: 62s</item>
- <item>Reduction of surface collisions with optimization: 52s</item>
- <item>Spherical mapping with areal smoothing 105s</item>
- <item>Spherical registration 300s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4865 0.6252 mm</item>
- <item>Surface intensity / position RMSE: 0.0631 / 0.0624</item>
- <item>Euler number / defect number / defect size: 12.0 / 6.5 / 0.46%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_32453/ds/sub-34/surf/lh.thickness.sub-34_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_32453/ds/sub-34/surf/rh.thickness.sub-34_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_32453/ds/sub-34/sub-34_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1581s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 4s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 13s</item>
- <item>ROI estimation of 'lpba40' atlas 4s</item>
- <item>ROI estimation of 'hammers' atlas 9s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 3s</item>
- <item>ROI estimation of 'aal3' atlas 5s</item>
- <item>ROI estimation of 'mori' atlas 8s</item>
- <item>ROI estimation of 'anatomy3' atlas 12s</item>
- <item>ROI estimation of 'julichbrain' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 6s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 10s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 24s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 35s</item>
- <item>Write results 36s</item>
- <item>151s</item>
- <item>Quality check: 4s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_32453/ds/sub-34/report/catreport_sub-34_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 39 minute(s) and 33 second(s).</item>
- <item>Image Quality Rating (IQR): 83.06% (B-)</item>
- <item>GM volume (GMV): 44.95% (585.17 / 1301.85 ml)</item>
- <item>GM thickness (GMT): 2.49 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_32453/ds/sub-34/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_32453/ds/sub-34/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_32453/ds/sub-34/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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