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- <F>/var/lib/condor/execute/dir_23851/ds/sub-50/sub-50_T1w.nii</F>
- <Fm>/var/lib/condor/execute/dir_23851/ds/sub-50/mri/msub-50_T1w.nii</Fm>
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- <fnames>..23851/ds/sub-50/sub-50_T1w</fnames>
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- <parameter>
- <opts>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <cleanupstr>0.5</cleanupstr>
- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <WMHC>2</WMHC>
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- <SLC>0</SLC>
- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
- <bids_yes>0</bids_yes>
- <nproc>20</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
- <vox>1.5</vox>
- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
- <SRP>22</SRP>
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- <vdist>2</vdist>
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- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <optimal>[1 0.3]</optimal>
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- </shootingtpms>
- <templates>
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- <tissue_mnr>[0.00883159972727299 0.320964902639389 0.723187506198883 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[10.403108208677 49.8004768441541 41.231178368754 23.1117272632066]</tissue_std>
- <tissue_stdr>[0.023419588804245 0.112111367285252 0.0928200706839561 0.0520293675363064]</tissue_stdr>
- <contrast>125.162635803223</contrast>
- <contrastr>0.27927902340889</contrastr>
- <NCR>0.143750250339508</NCR>
- <ICR>0.361387223005295</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999994657329 2 1.99999994657329]</res_vx_vol>
- <res_RMS>1.99999996438219</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62399673461914 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.8941478729248</contrastr>
- <NCR>2.39463472366333</NCR>
- <ICR>1.35611915588379</ICR>
- <SurfaceEulerNumber>2.02040816326531</SurfaceEulerNumber>
- <SurfaceDefectArea>1.1696643923255</SurfaceDefectArea>
- <SurfaceDefectNumber>1.75</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.29810166358948</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.34378802776337</SurfacePositionRMSE>
- <IQR>2.25500038667575</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220712-163919</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>0.678657569302019</SurfaceDefectArea>
- <SurfaceDefectNumber>15</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.06490508466959</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0671894028782845</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>22</EC_abs>
- <defect_size>0.678657569302019</defect_size>
- <vol_abs_CGW>[210.954055374655 612.27688487292 482.608252598174 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.739447019242189</vol_abs_WMH>
- <vol_rel_WMH>0.000566261928186387</vol_rel_WMH>
- <surf_TSA>1767.78778652757</surf_TSA>
- <vol_TIV>1305.83919284575</vol_TIV>
- <vol_rel_CGW>[0.161546732959465 0.468876174208415 0.36957709283212 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.44751790374199 0.606066183292104]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.46845269203186 0.685603711729657 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.83467509430607 0.235488119642854 0.28217412041973;2.4670976015416 0.171850815153406 0.42071853431345;3.07041670345242 0.245356477934789 0.29710734526682]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.893010114971979 0.291636562174879 0.554930411607936;3.96939749076853 0.366128512813531 0.445069588392064]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.20833902895839</vol_TIV>
- <vol_rel_CGW>[0.751198508611076 6.27076462299596 4.48737594885273 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.05662619281864</vol_rel_WMH>
- <surf_TSA>8.56699739410091</surf_TSA>
- <SQR>5.17082208691758</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.0665699124995607 1 14198 3984.392787127 0.400534107917785]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0163208208978176 0.00682951230555773 0.481021672487259]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[753.602959660917 439.367603932381 350.552479274738 390.479167333609 733.105517620855 2021.9333976517]</SPMvols0>
- <SPMvols1>[650.208729901316 410.010280013632 206.452498752871 335.645174190348 615.903892521909 2050.52480396439]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[176.410705566406 337.721801757812 441.814086914062]</T3th>
- <Tth>
- <T3th>[0 55.4601440429688 14.1531534194946 176.410705566406 337.721801757812 441.814086914062 574.515747070312 1423.34069824219]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0206985101103783 0.0748079717159271 0.0826003402471542 0 0]</dtc>
- <ll>[0.0821052358931854 0 0.0821052358931854 0;0.190705792815173 0.0108101857381136 0.201515978553287 2305.25048828125;0.190705792815173 0.0108101857381136 0.201515978553287 2305.25048828125]</ll>
- <rmsdtc>[0.0483976900577545 0.0994460508227348 0.111313529312611]</rmsdtc>
- <rmsgdt>[0.035541832447052 0.0479877665638924 0.0585660599172115]</rmsgdt>
- <rmsdt>0.111313529312611</rmsdt>
- <dt>0.0826003402471542</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00973768346011639 0.0357110053300858 0.0515510253608227 0.0605942755937576 0.0670143961906433 0.0764552056789398]</dtc>
- <ll>[0.0843172906173537 0 0.0843172906173537 0;0.220976312576313 0.0149010454822955 0.235877358058608 7627.47265625;0.196552383974423 0.0179852092204069 0.21453759319483 12944.1708984375;0.175261407835871 0.0196669996067783 0.194928407442649 21206.375;0.158826613325041 0.0221466254237995 0.18097323874884 38742.265625;0.158826613325041 0.0221466254237995 0.18097323874884 38742.265625]</ll>
- <rmsdtc>[0.0113580357283354 0.042186725884676 0.0655511468648911 0.0941698178648949 0.121316947042942 0.130451172590256]</rmsdtc>
- <rmsgdt>[0.00355480867438018 0.0148377604782581 0.0312838368117809 0.0517596155405045 0.0704517140984535 0.0763519033789635]</rmsgdt>
- <rmsdt>0.130451172590256</rmsdt>
- <dt>0.0764552056789398</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_23851/ds/sub-50/sub-50_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 27s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 3s</item>
- <item>Estimate background 5s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 3s</item>
- <item>24s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 6s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 8s</item>
- <item>Use initial fine affine registration. 53s</item>
- <item>SPM preprocessing 1 (estimate 2): 52s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 11s</item>
- <item>Update Segmentation 16s</item>
- <item>Update Skull-Stripping 25s</item>
- <item>Update probability maps 4s</item>
- <item>56s</item>
- <item>Global intensity correction: 8s</item>
- <item>SANLM denoising after intensity normalization (medium): 8s</item>
- <item>Fast Optimized Shooting registration 34s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 1s</item>
- <item>Prepare segments (LASmod = 1.00) 14s</item>
- <item>Estimate local tissue thresholds (WM) 12s</item>
- <item>Estimate local tissue thresholds (GM) 18s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 12s</item>
- <item>63s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 14s</item>
- <item>Blood vessel detection 9s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 24s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 2s</item>
- <item>65s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 39s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.09,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0843 0.0000 0.0843 | 32.0000</item>
- <item>2 | 2.50 | 0.0814 0.0013 0.0826 | 29.4886</item>
- <item>3 | 2.50 | 0.0805 0.0019 0.0824 | 26.9772</item>
- <item>4 | 2.50 | 0.0800 0.0022 0.0822 | 24.6107</item>
- <item>5 | 2.50 | 0.0797 0.0023 0.0820 | 22.6548</item>
- <item>6 | 2.50 | 0.0794 0.0024 0.0818 | 20.6989</item>
- <item>7 | 2.50 | 0.0791 0.0025 0.0816 | 18.9688</item>
- <item>8 | 2.50 | 0.0788 0.0026 0.0814 | 17.4455</item>
- <item>9 | 2.50 | 0.0785 0.0027 0.0812 | 15.9223</item>
- <item>10 | 2.50 | 0.0781 0.0028 0.0810 | 14.6627</item>
- <item>11 | 2.50 | 0.0778 0.0029 0.0807 | 13.4764</item>
- <item>12 | 2.50 | 0.0775 0.0030 0.0805 | 12.3015</item>
- <item>13 | 2.50 | 0.0771 0.0031 0.0802 | 11.3776</item>
- <item>14 | 2.50 | 0.0768 0.0032 0.0800 | 10.4537</item>
- <item>15 | 2.25 | 0.0769 0.0032 0.0802 | 9.5920</item>
- <item>16 | 2.25 | 0.0737 0.0050 0.0786 | 8.8725</item>
- <item>29 | 2.00 | 0.0745 0.0022 0.0767 | 3.3283</item>
- <item>30 | 2.00 | 0.0678 0.0049 0.0727 | 3.1221</item>
- <item>31 | 2.00 | 0.0655 0.0060 0.0715 | 2.9160</item>
- <item>43 | 1.75 | 0.0642 0.0035 0.0677 | 1.5785</item>
- <item>44 | 1.75 | 0.0599 0.0058 0.0656 | 1.5194</item>
- <item>45 | 1.75 | 0.0584 0.0066 0.0650 | 1.4626</item>
- <item>57 | 1.50 | 0.0569 0.0048 0.0618 | 1.0900</item>
- <item>58 | 1.50 | 0.0539 0.0068 0.0607 | 1.0730</item>
- <item>59 | 1.50 | 0.0529 0.0074 0.0603 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 226s</item>
- <item>Prepare output 8s</item>
- <item>234s</item>
- <item>Jacobian determinant (RMS): 0.011 0.042 0.066 0.094 0.121 | 0.130451</item>
- <item>Template Matching: 0.084 0.221 0.197 0.175 0.159 | 0.158827</item>
- <item>Write result maps: 19s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 37s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 55s</item>
- <item>116s</item>
- <item>Create initial surface 95s</item>
- <item>Topology correction: 90s</item>
- <item>Surface refinement: 91s</item>
- <item>Reduction of surface collisions with optimization: 77s</item>
- <item>Spherical mapping with areal smoothing 94s</item>
- <item>Spherical registration 274s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 40s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 52s</item>
- <item>116s</item>
- <item>Create initial surface 94s</item>
- <item>Topology correction: 90s</item>
- <item>Surface refinement: 119s</item>
- <item>Reduction of surface collisions with optimization: 77s</item>
- <item>Spherical mapping with areal smoothing 94s</item>
- <item>Spherical registration 277s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4476 0.6059 mm</item>
- <item>Surface intensity / position RMSE: 0.0649 / 0.0672</item>
- <item>Euler number / defect number / defect size: 22.0 / 15.0 / 0.68%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_23851/ds/sub-50/surf/lh.thickness.sub-50_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_23851/ds/sub-50/surf/rh.thickness.sub-50_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_23851/ds/sub-50/sub-50_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1795s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 24s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 17s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 21s</item>
- <item>ROI estimation of 'julichbrain' atlas 28s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 9s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 13s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 64s</item>
- <item>Write results 66s</item>
- <item>268s</item>
- <item>Quality check: 6s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_23851/ds/sub-50/report/catreport_sub-50_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 47 minute(s) and 55 second(s).</item>
- <item>Image Quality Rating (IQR): 82.45% (B-)</item>
- <item>GM volume (GMV): 46.89% (612.28 / 1305.84 ml)</item>
- <item>GM thickness (GMT): 2.45 0.61 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_23851/ds/sub-50/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_23851/ds/sub-50/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_23851/ds/sub-50/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|