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- <F>/var/lib/condor/execute/dir_26305/ds/sub-74/sub-74_T1w.nii</F>
- <Fm>/var/lib/condor/execute/dir_26305/ds/sub-74/mri/msub-74_T1w.nii</Fm>
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- <fnames>..26305/ds/sub-74/sub-74_T1w</fnames>
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- <parameter>
- <opts>
- <tpm>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <WMHC>2</WMHC>
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- <SLC>0</SLC>
- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
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- <bids_yes>0</bids_yes>
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- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
- <SRP>22</SRP>
- <reduce_mesh>1</reduce_mesh>
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- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
- <colormap>BCGWHw</colormap>
- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
- </tr>
- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>[false]</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
- <LAB>
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- <PH>25</PH>
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- <new_release>0</new_release>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- <LASmyostr>0</LASmyostr>
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- </shootingtpms>
- <templates>
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- </templates>
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- <tissue_mnr>[0.0309625640511513 0.171615585684776 0.609168410301208 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[9.93422605626894 21.75098400742 20.1288322981079 13.674465658702]</tissue_std>
- <tissue_stdr>[0.0587918423116207 0.128724709153175 0.11912464350462 0.0809269919991493]</tissue_stdr>
- <contrast>61.4956321716309</contrast>
- <contrastr>0.352669447660446</contrastr>
- <NCR>0.206963196396828</NCR>
- <ICR>0.398790031671524</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.19999694824219 2 2]</res_vx_vol>
- <res_RMS>2.06881500480146</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.7932915687561</contrastr>
- <NCR>3.30208444595337</NCR>
- <ICR>1.44888401031494</ICR>
- <SurfaceEulerNumber>3.75510204081633</SurfaceEulerNumber>
- <SurfaceDefectArea>1.45577637577239</SurfaceDefectArea>
- <SurfaceDefectNumber>2.2</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.66760504245758</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>2.09036374092102</SurfacePositionRMSE>
- <IQR>3.03691822504258</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-110439</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>56</SurfaceEulerNumber>
- <SurfaceDefectArea>1.82310550308954</SurfaceDefectArea>
- <SurfaceDefectNumber>24</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.083380252122879</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.104518190026283</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>56</EC_abs>
- <defect_size>1.82310550308954</defect_size>
- <vol_abs_CGW>[168.759772961246 694.423670445581 487.129277212704 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.315203484329523</vol_abs_WMH>
- <vol_rel_WMH>0.000233429989598932</vol_rel_WMH>
- <surf_TSA>1840.62015539747</surf_TSA>
- <vol_TIV>1350.31272061953</vol_TIV>
- <vol_rel_CGW>[0.124978288646958 0.51426877629278 0.360752935060262 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.54935787494507 0.646713866014451]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.59069466590881 0.868078879578811 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.89285776317985 0.322643546656094 0.264028772282527;2.58831617106218 0.187299382998267 0.453026376768079;3.25447123872298 0.294472328010901 0.282944850949394]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.711330886291873 0.283536394385088 0.691246526399365;4.21742346692185 0.310405375507004 0.308753473600635]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.05859345582347</vol_TIV>
- <vol_rel_CGW>[0.5 7.08600532135021 4.32889610381218 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02334299895989</vol_rel_WMH>
- <surf_TSA>8.60063715920716</surf_TSA>
- <SQR>5.80862462077891</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.186036677654188 46 9 10004.6346219254 0.444139163484834]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0377339646220207 0.0394377484917641 0.189492508769035]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[837.39029095088 459.41763682978 336.615985607252 702.773918470256 2331.5982809836 8369.64275777127]</SPMvols0>
- <SPMvols1>[703.138263847202 423.032689654631 183.082111133022 1304.6769803944 1960.39808884053 7717.07862337727]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[46.3786010742188 113.70580291748 174.07389831543]</T3th>
- <Tth>
- <T3th>[0 2.50653076171875 7.68030691146851 46.3786010742188 113.70580291748 174.07389831543 237.921539306641 654.01171875]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0176500529050827 0.0582253150641918 0.0633129701018333 0 0]</dtc>
- <ll>[0.0790744276226115 0 0.0790744276226115 0;0.194593028861935 0.00795153953304955 0.202544568394985 1695.64990234375;0.194593028861935 0.00795153953304955 0.202544568394985 1695.64990234375]</ll>
- <rmsdtc>[0.038079883903265 0.0784055292606354 0.0876747965812683]</rmsdtc>
- <rmsgdt>[0.0273296292871237 0.0401866585016251 0.0500940680503845]</rmsgdt>
- <rmsdt>0.0876747965812683</rmsdt>
- <dt>0.0633129701018333</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00763833895325661 0.0271609351038933 0.0381155386567116 0.0464994050562382 0.0535146817564964 0.0601842775940895]</dtc>
- <ll>[0.0820590958453999 0 0.0820590958453999 0;0.221576800976801 0.010673582493895 0.232250383470696 5463.5400390625;0.203491053539471 0.0143296969938149 0.217820750533286 10313.2548828125;0.184158383158424 0.017258933013887 0.201417316172311 18609.82421875;0.168401635490378 0.0205605122293785 0.188962147719757 35967.59375;0.168401635490378 0.0205605122293785 0.188962147719757 35967.59375]</ll>
- <rmsdtc>[0.0091416547074914 0.0326496660709381 0.0506983771920204 0.0780335366725922 0.107092909514904 0.1151417568326]</rmsdtc>
- <rmsgdt>[0.0030275578610599 0.0119596691802144 0.0281290207058191 0.05162113904953 0.0737865045666695 0.0803322419524193]</rmsgdt>
- <rmsdt>0.1151417568326</rmsdt>
- <dt>0.0601842775940895</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_26305/ds/sub-74/sub-74_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 56s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 10s</item>
- <item>Initial correction 7s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 7s</item>
- <item>47s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 7s</item>
- <item>Use initial fine affine registration. 55s</item>
- <item>SPM preprocessing 1 (estimate 2): 56s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 16s</item>
- <item>Update Segmentation 17s</item>
- <item>Update Skull-Stripping 39s</item>
- <item>Update probability maps 9s</item>
- <item>81s</item>
- <item>Global intensity correction: 15s</item>
- <item>SANLM denoising after intensity normalization (medium): 13s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.34) 12s</item>
- <item>Estimate local tissue thresholds (WM) 16s</item>
- <item>Estimate local tissue thresholds (GM) 20s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 30s</item>
- <item>88s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 13s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.00) 23s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>62s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 32s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>10s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0821 0.0000 0.0821 | 32.0000</item>
- <item>2 | 2.50 | 0.0803 0.0009 0.0812 | 29.4886</item>
- <item>3 | 2.50 | 0.0798 0.0014 0.0811 | 26.9772</item>
- <item>4 | 2.50 | 0.0795 0.0015 0.0811 | 24.6107</item>
- <item>5 | 2.50 | 0.0793 0.0016 0.0810 | 22.6548</item>
- <item>6 | 2.50 | 0.0791 0.0017 0.0808 | 20.6989</item>
- <item>7 | 2.50 | 0.0789 0.0018 0.0807 | 18.9688</item>
- <item>8 | 2.50 | 0.0787 0.0019 0.0806 | 17.4455</item>
- <item>9 | 2.50 | 0.0785 0.0019 0.0804 | 15.9223</item>
- <item>10 | 2.50 | 0.0783 0.0020 0.0803 | 14.6627</item>
- <item>11 | 2.50 | 0.0781 0.0021 0.0801 | 13.4764</item>
- <item>12 | 2.50 | 0.0779 0.0021 0.0800 | 12.3015</item>
- <item>13 | 2.50 | 0.0776 0.0022 0.0798 | 11.3776</item>
- <item>14 | 2.50 | 0.0774 0.0023 0.0796 | 10.4537</item>
- <item>15 | 2.25 | 0.0764 0.0023 0.0787 | 9.5920</item>
- <item>16 | 2.25 | 0.0739 0.0036 0.0774 | 8.8725</item>
- <item>29 | 2.00 | 0.0753 0.0016 0.0770 | 3.3283</item>
- <item>30 | 2.00 | 0.0697 0.0039 0.0736 | 3.1221</item>
- <item>31 | 2.00 | 0.0678 0.0048 0.0726 | 2.9160</item>
- <item>43 | 1.75 | 0.0670 0.0027 0.0697 | 1.5785</item>
- <item>44 | 1.75 | 0.0628 0.0050 0.0678 | 1.5194</item>
- <item>45 | 1.75 | 0.0614 0.0058 0.0671 | 1.4626</item>
- <item>57 | 1.50 | 0.0603 0.0042 0.0644 | 1.0900</item>
- <item>58 | 1.50 | 0.0572 0.0062 0.0633 | 1.0730</item>
- <item>59 | 1.50 | 0.0561 0.0069 0.0630 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 172s</item>
- <item>Prepare output 9s</item>
- <item>181s</item>
- <item>Jacobian determinant (RMS): 0.009 0.033 0.051 0.078 0.107 | 0.115142</item>
- <item>Template Matching: 0.082 0.222 0.203 0.184 0.168 | 0.168402</item>
- <item>Write result maps: 23s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 25s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 43s</item>
- <item>88s</item>
- <item>Create initial surface 79s</item>
- <item>Topology correction: 103s</item>
- <item>Surface refinement: 68s</item>
- <item>Reduction of surface collisions with optimization: 68s</item>
- <item>Spherical mapping with areal smoothing 89s</item>
- <item>Spherical registration 291s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 25s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 40s</item>
- <item>84s</item>
- <item>Create initial surface 75s</item>
- <item>Topology correction: 90s</item>
- <item>Surface refinement: 82s</item>
- <item>Reduction of surface collisions with optimization: 63s</item>
- <item>Spherical mapping with areal smoothing 74s</item>
- <item>Spherical registration 262s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5493 0.6465 mm</item>
- <item>Surface intensity / position RMSE: 0.0834 / 0.1045</item>
- <item>Euler number / defect number / defect size: 56.0 / 24.0 / 1.82%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_26305/ds/sub-74/surf/lh.thickness.sub-74_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_26305/ds/sub-74/surf/rh.thickness.sub-74_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_26305/ds/sub-74/sub-74_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1603s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 25s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 18s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 22s</item>
- <item>ROI estimation of 'julichbrain' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 47s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 70s</item>
- <item>Write results 71s</item>
- <item>291s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_26305/ds/sub-74/report/catreport_sub-74_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 45 minute(s) and 51 second(s).</item>
- <item>Image Quality Rating (IQR): 74.63% (C)</item>
- <item>GM volume (GMV): 51.43% (694.42 / 1350.31 ml)</item>
- <item>GM thickness (GMT): 2.55 0.65 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_26305/ds/sub-74/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_26305/ds/sub-74/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_26305/ds/sub-74/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|