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- <path>/var/lib/condor/execute/dir_2771312/ds/sub-51</path>
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- <Fm>/var/lib/condor/execute/dir_2771312/ds/sub-51/mri/msub-51_T1w.nii</Fm>
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- <fnames>..71312/ds/sub-51/sub-51_T1w</fnames>
- </filedata>
- <parameter>
- <opts>
- <tpm>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <WMHC>2</WMHC>
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- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
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- <nproc>64</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
- <SRP>22</SRP>
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- <scale_cortex>0.7</scale_cortex>
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- <colormap>BCGWHw</colormap>
- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
- </tr>
- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
- </tr>
- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
- </tr>
- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <new_release>0</new_release>
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- <shooting>
- <shootingtpm>
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- <optimal>[1 0.3]</optimal>
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- <LASmyostr>0</LASmyostr>
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- </shootingtpms>
- <templates>
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- </templates>
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- <tissue_mnr>[0.0217077620327473 0.227756857872009 0.651417076587677 0.999999940395355]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[5.89488528248481 19.8811535049642 16.9691001483409 10.2475283695489]</tissue_std>
- <tissue_stdr>[0.0379913523793221 0.128130048513412 0.109362445771694 0.0660432651638985]</tissue_stdr>
- <contrast>56.5144386291504</contrast>
- <contrastr>0.356317728757858</contrastr>
- <NCR>0.147910669445992</NCR>
- <ICR>0.386795789003372</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.20000079048211 1.99999998128665 2]</res_vx_vol>
- <res_RMS>2.06881636072969</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62385654449463 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.73856735229492</contrastr>
- <NCR>2.45435929298401</NCR>
- <ICR>1.41913628578186</ICR>
- <SurfaceEulerNumber>1.51020408163265</SurfaceEulerNumber>
- <SurfaceDefectArea>1.07155906635532</SurfaceDefectArea>
- <SurfaceDefectNumber>1.6</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.41443014144897</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.37474000453949</SurfacePositionRMSE>
- <IQR>2.3154371968408</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-111544</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>12</SurfaceEulerNumber>
- <SurfaceDefectArea>0.2862362654213</SurfaceDefectArea>
- <SurfaceDefectNumber>12</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0707215070724487</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0687370002269745</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>12</EC_abs>
- <defect_size>0.2862362654213</defect_size>
- <vol_abs_CGW>[198.60959484296 753.948633388515 497.497519802212 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.609719429798958</vol_abs_WMH>
- <vol_rel_WMH>0.000420479992321504</vol_rel_WMH>
- <surf_TSA>1928.01192411199</surf_TSA>
- <vol_TIV>1450.05574803369</vol_TIV>
- <vol_rel_CGW>[0.136966868420252 0.519944584482968 0.34308854709678 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.67468108064159 0.64781228689005]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.67324781417847 0.832292707966772 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.05809488169052 0.271602135768768 0.307367141952247;2.72229002588329 0.189865545634168 0.445441265819512;3.42596722747717 0.300703133011932 0.24719159222824]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.926328999747979 0.356252442827907 0.56024780588539;4.45604433971942 0.327827413701826 0.43975219411461]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.05946229710207</vol_TIV>
- <vol_rel_CGW>[0.5 7.1879415316625 4.01164775676688 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04204799923215</vol_rel_WMH>
- <surf_TSA>8.61673956564312</surf_TSA>
- <SQR>5.88493835608443</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.113630278019611 43 14 10894.6194126074 0.549250041824708]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0330779328942299 0.0355709940195084 0.0943607240915298]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[895.296189691626 450.275879298013 385.633092676101 2796.79303233447 1609.91086260073 7051.55245038253]</SPMvols0>
- <SPMvols1>[772.992107526914 423.813549613188 212.349798883737 2350.98152832968 1352.20407053426 7179.24914424487]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[43.4273986816406 108.804397583008 161.113204956055]</T3th>
- <Tth>
- <T3th>[0 0 7.66380310058594 43.4273986816406 108.804397583008 161.113204956055 219.956115722656 621.652465820312]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.021368745714426 0.0815611183643341 0.0910407677292824 0 0]</dtc>
- <ll>[0.0861708025495354 0 0.0861708025495354 0;0.195168191788434 0.0112152099609375 0.206383401749372 2391.62109375;0.195168191788434 0.0112152099609375 0.206383401749372 2391.62109375]</ll>
- <rmsdtc>[0.0465304516255856 0.109315797686577 0.121381528675556]</rmsdtc>
- <rmsgdt>[0.0329306721687317 0.0461583472788334 0.0566511824727058]</rmsgdt>
- <rmsdt>0.121381528675556</rmsdt>
- <dt>0.0910407677292824</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0102664427831769 0.0396738946437836 0.0578007847070694 0.0668385475873947 0.0731938853859901 0.0830701738595963]</dtc>
- <ll>[0.0869179411800662 0 0.0869179411800662 0;0.223307707570208 0.0163014785561661 0.239609186126374 8344.3193359375;0.199044266143958 0.0185997101205934 0.217643976264551 13386.4345703125;0.178422889818153 0.0197127578604935 0.198135647678647 21255.71484375;0.162066489725058 0.022356506591294 0.184422996316352 39109.421875;0.162066489725058 0.022356506591294 0.184422996316352 39109.421875]</ll>
- <rmsdtc>[0.0121491337195039 0.0463833212852478 0.0702200159430504 0.0979800224304199 0.121373474597931 0.129245340824127]</rmsdtc>
- <rmsgdt>[0.00341868679970503 0.0137154497206211 0.0298027638345957 0.0507236830890179 0.069457620382309 0.0753548964858055]</rmsgdt>
- <rmsdt>0.129245340824127</rmsdt>
- <dt>0.0830701738595963</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_2771312/ds/sub-51/sub-51_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 112s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 14s</item>
- <item>Initial correction 12s</item>
- <item>Refine background 5s</item>
- <item>Final correction 8s</item>
- <item>Final scaling 11s</item>
- <item>65s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 84s</item>
- <item>SPM preprocessing 1 (estimate 2): 95s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 20s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 48s</item>
- <item>Update probability maps 11s</item>
- <item>101s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 15s</item>
- <item>Fast Optimized Shooting registration 43s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.03) 17s</item>
- <item>Estimate local tissue thresholds (WM) 26s</item>
- <item>Estimate local tissue thresholds (GM) 37s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 45s</item>
- <item>137s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 15s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.00) 30s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>80s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 37s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.99 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>13s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0869 0.0000 0.0869 | 32.0000</item>
- <item>2 | 2.50 | 0.0833 0.0015 0.0847 | 29.4886</item>
- <item>3 | 2.50 | 0.0822 0.0022 0.0844 | 26.9772</item>
- <item>4 | 2.50 | 0.0817 0.0025 0.0842 | 24.6107</item>
- <item>5 | 2.50 | 0.0813 0.0027 0.0840 | 22.6548</item>
- <item>6 | 2.50 | 0.0809 0.0028 0.0837 | 20.6989</item>
- <item>7 | 2.50 | 0.0805 0.0029 0.0835 | 18.9688</item>
- <item>8 | 2.50 | 0.0802 0.0031 0.0832 | 17.4455</item>
- <item>9 | 2.50 | 0.0798 0.0032 0.0829 | 15.9223</item>
- <item>10 | 2.50 | 0.0793 0.0033 0.0826 | 14.6627</item>
- <item>11 | 2.50 | 0.0789 0.0034 0.0823 | 13.4764</item>
- <item>12 | 2.50 | 0.0785 0.0035 0.0820 | 12.3015</item>
- <item>13 | 2.50 | 0.0781 0.0036 0.0817 | 11.3776</item>
- <item>14 | 2.50 | 0.0776 0.0037 0.0813 | 10.4537</item>
- <item>15 | 2.25 | 0.0778 0.0038 0.0816 | 9.5920</item>
- <item>16 | 2.25 | 0.0744 0.0054 0.0799 | 8.8725</item>
- <item>29 | 2.00 | 0.0754 0.0025 0.0779 | 3.3283</item>
- <item>30 | 2.00 | 0.0687 0.0051 0.0738 | 3.1221</item>
- <item>31 | 2.00 | 0.0663 0.0062 0.0725 | 2.9160</item>
- <item>43 | 1.75 | 0.0651 0.0036 0.0688 | 1.5785</item>
- <item>44 | 1.75 | 0.0609 0.0058 0.0667 | 1.5194</item>
- <item>45 | 1.75 | 0.0595 0.0066 0.0660 | 1.4626</item>
- <item>57 | 1.50 | 0.0581 0.0049 0.0630 | 1.0900</item>
- <item>58 | 1.50 | 0.0551 0.0068 0.0619 | 1.0730</item>
- <item>59 | 1.50 | 0.0540 0.0075 0.0615 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 196s</item>
- <item>Prepare output 13s</item>
- <item>210s</item>
- <item>Jacobian determinant (RMS): 0.012 0.046 0.070 0.098 0.121 | 0.129245</item>
- <item>Template Matching: 0.087 0.223 0.199 0.178 0.162 | 0.162066</item>
- <item>Write result maps: 28s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 39s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 59s</item>
- <item>126s</item>
- <item>Create initial surface 101s</item>
- <item>Topology correction: 111s</item>
- <item>Surface refinement: 77s</item>
- <item>Reduction of surface collisions with optimization: 77s</item>
- <item>Spherical mapping with areal smoothing 95s</item>
- <item>Spherical registration 325s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 32s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 55s</item>
- <item>114s</item>
- <item>Create initial surface 95s</item>
- <item>Topology correction: 102s</item>
- <item>Surface refinement: 83s</item>
- <item>Reduction of surface collisions with optimization: 72s</item>
- <item>Spherical mapping with areal smoothing 98s</item>
- <item>Spherical registration 333s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6748 0.6477 mm</item>
- <item>Surface intensity / position RMSE: 0.0707 / 0.0687</item>
- <item>Euler number / defect number / defect size: 12.0 / 12.0 / 0.29%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2771312/ds/sub-51/surf/lh.thickness.sub-51_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2771312/ds/sub-51/surf/rh.thickness.sub-51_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2771312/ds/sub-51/sub-51_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1913s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 8s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 30s</item>
- <item>ROI estimation of 'lpba40' atlas 9s</item>
- <item>ROI estimation of 'hammers' atlas 21s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 19s</item>
- <item>ROI estimation of 'anatomy3' atlas 27s</item>
- <item>ROI estimation of 'julichbrain' atlas 35s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 14s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 24s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 57s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 85s</item>
- <item>Write results 86s</item>
- <item>353s</item>
- <item>Quality check: 6s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2771312/ds/sub-51/report/catreport_sub-51_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 57 minute(s) and 5 second(s).</item>
- <item>Image Quality Rating (IQR): 81.85% (B-)</item>
- <item>GM volume (GMV): 51.99% (753.95 / 1450.06 ml)</item>
- <item>GM thickness (GMT): 2.67 0.65 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2771312/ds/sub-51/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2771312/ds/sub-51/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2771312/ds/sub-51/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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