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- <F>/var/lib/condor/execute/dir_19497/ds/sub-140/sub-140_T1w.nii</F>
- <Fm>/var/lib/condor/execute/dir_19497/ds/sub-140/mri/msub-140_T1w.nii</Fm>
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- <fnames>..9497/ds/sub-140/sub-140_T1w</fnames>
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- <parameter>
- <opts>
- <tpm>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii</item>
- </tpm>
- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
- <gcutstr>2</gcutstr>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <WMHC>2</WMHC>
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- <SLC>0</SLC>
- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
- <bids_yes>0</bids_yes>
- <nproc>64</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
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- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
- </tr>
- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>[false]</td>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <LAB>
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- <PH>25</PH>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- </shootingtpms>
- <templates>
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- </templates>
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- <tissue_mnr>[0.0127884699031711 0.188504248857498 0.602551162242889 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.68107661864511 40.6109587066314 44.7389561564166 27.3512561357317]</tissue_std>
- <tissue_stdr>[0.00977355055510998 0.107825323939323 0.118785485625267 0.0726197585463524]</tissue_stdr>
- <contrast>134.603973388672</contrast>
- <contrastr>0.352813839912415</contrastr>
- <NCR>0.156208038330078</NCR>
- <ICR>0.246658101677895</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.19999694824219 2 2]</res_vx_vol>
- <res_RMS>2.06881500480146</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.79112577438354</contrastr>
- <NCR>2.57347178459167</NCR>
- <ICR>1.07157266139984</ICR>
- <SurfaceEulerNumber>1.30612244897959</SurfaceEulerNumber>
- <SurfaceDefectArea>1.07593515916561</SurfaceDefectArea>
- <SurfaceDefectNumber>1.425</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.23815536499023</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.24193203449249</SurfacePositionRMSE>
- <IQR>2.40779214905753</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-110702</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>8</SurfaceEulerNumber>
- <SurfaceDefectArea>0.303740636662448</SurfaceDefectArea>
- <SurfaceDefectNumber>8.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0619077682495117</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0620966032147408</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>8</EC_abs>
- <defect_size>0.303740636662448</defect_size>
- <vol_abs_CGW>[230.172510908927 668.269653784329 486.678571171241 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.800993006537942</vol_abs_WMH>
- <vol_rel_WMH>0.000578283889482037</vol_rel_WMH>
- <surf_TSA>1827.4455124034</surf_TSA>
- <vol_TIV>1385.1207358645</vol_TIV>
- <vol_rel_CGW>[0.16617505243344 0.482463106992071 0.351361840574489 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.56591444982878 0.595374612632503]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.54866528511047 0.724803211931643 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.02412042180237 0.235488357407312 0.318293571608562;2.58987249578217 0.166825994190774 0.421063384933904;3.22524170130648 0.259525200904849 0.260643043457533]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.982170002518576 0.369880661780438 0.543666564761031;4.17222136783515 0.36105228283324 0.456333435238969]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.0052728521156</vol_TIV>
- <vol_rel_CGW>[0.834322062382175 6.5147828123576 4.16023420571999 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.0578283889482</vol_rel_WMH>
- <surf_TSA>8.59639441987844</surf_TSA>
- <SQR>5.34576063548223</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.381063064172471 2 2 7607.51464712524 0.426240951322874]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.00804655067622662]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[794.527771976875 438.069944873915 387.882298806164 844.973680431471 2475.47994492547 7876.06739459839]</SPMvols0>
- <SPMvols1>[706.751659619141 416.116658463991 214.253923971019 603.515478510987 1320.58891557683 9030.40271334534]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[84.2437973022461 250.901306152344 387.246704101562]</T3th>
- <Tth>
- <T3th>[0 0 4.46570348739624 84.2437973022461 250.901306152344 387.246704101562 538.748168945312 1025.35266113281]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0201202817261219 0.0746425092220306 0.0832617431879044 0 0]</dtc>
- <ll>[0.0838599050460028 0 0.0838599050460028 0;0.19592594728321 0.0109791761400605 0.206905123423271 2341.28735351562;0.19592594728321 0.0109791761400605 0.206905123423271 2341.28735351562]</ll>
- <rmsdtc>[0.0421029925346375 0.102977849543095 0.115515008568764]</rmsdtc>
- <rmsgdt>[0.0297532714903355 0.0467367097735405 0.0577148012816906]</rmsgdt>
- <rmsdt>0.115515008568764</rmsdt>
- <dt>0.0832617431879044</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00945666618645191 0.0373741388320923 0.05135403200984 0.0601428374648094 0.066382460296154 0.0757260024547577]</dtc>
- <ll>[0.0851047493353219 0 0.0851047493353219 0;0.221797847985348 0.0154007593101343 0.237198607295482 7883.263671875;0.20179957833828 0.0178191827946456 0.219618761132925 12824.6796875;0.180471045339209 0.0197636005658823 0.200234645905092 21310.537109375;0.163137742925527 0.0225535303266408 0.185691273252168 39454.0859375;0.163137742925527 0.0225535303266408 0.185691273252168 39454.0859375]</ll>
- <rmsdtc>[0.0113346604630351 0.0429516285657883 0.0668651014566422 0.0943394377827644 0.1188083589077 0.126727148890495]</rmsdtc>
- <rmsgdt>[0.00324863358400762 0.013353074900806 0.029852332547307 0.0513882525265217 0.0695636570453644 0.0754893943667412]</rmsgdt>
- <rmsdt>0.126727148890495</rmsdt>
- <dt>0.0757260024547577</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_19497/ds/sub-140/sub-140_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 69s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 10s</item>
- <item>Initial correction 11s</item>
- <item>Refine background 5s</item>
- <item>Final correction 8s</item>
- <item>Final scaling 9s</item>
- <item>58s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 12s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 85s</item>
- <item>SPM preprocessing 1 (estimate 2): 56s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 21s</item>
- <item>Update Segmentation 21s</item>
- <item>Update Skull-Stripping 50s</item>
- <item>Update probability maps 11s</item>
- <item>102s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 11s</item>
- <item>Fast Optimized Shooting registration 42s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.14) 16s</item>
- <item>Estimate local tissue thresholds (WM) 27s</item>
- <item>Estimate local tissue thresholds (GM) 36s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 18s</item>
- <item>107s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 16s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.02) 26s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>75s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 36s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.07,0.68 0.07,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>13s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0851 0.0000 0.0851 | 32.0000</item>
- <item>2 | 2.50 | 0.0826 0.0011 0.0837 | 29.4886</item>
- <item>3 | 2.50 | 0.0819 0.0017 0.0836 | 26.9772</item>
- <item>4 | 2.50 | 0.0815 0.0019 0.0834 | 24.6107</item>
- <item>5 | 2.50 | 0.0812 0.0021 0.0833 | 22.6548</item>
- <item>6 | 2.50 | 0.0809 0.0022 0.0831 | 20.6989</item>
- <item>7 | 2.50 | 0.0806 0.0023 0.0829 | 18.9688</item>
- <item>8 | 2.50 | 0.0803 0.0024 0.0827 | 17.4455</item>
- <item>9 | 2.50 | 0.0800 0.0025 0.0825 | 15.9223</item>
- <item>10 | 2.50 | 0.0797 0.0026 0.0823 | 14.6627</item>
- <item>11 | 2.50 | 0.0794 0.0027 0.0821 | 13.4764</item>
- <item>12 | 2.50 | 0.0791 0.0028 0.0818 | 12.3015</item>
- <item>13 | 2.50 | 0.0787 0.0029 0.0816 | 11.3776</item>
- <item>14 | 2.50 | 0.0784 0.0030 0.0814 | 10.4537</item>
- <item>15 | 2.25 | 0.0782 0.0030 0.0812 | 9.5920</item>
- <item>16 | 2.25 | 0.0752 0.0045 0.0797 | 8.8725</item>
- <item>17 | 2.25 | 0.0739 0.0051 0.0791 | 8.1530</item>
- <item>29 | 2.00 | 0.0754 0.0024 0.0778 | 3.3283</item>
- <item>30 | 2.00 | 0.0694 0.0049 0.0743 | 3.1221</item>
- <item>31 | 2.00 | 0.0673 0.0059 0.0732 | 2.9160</item>
- <item>43 | 1.75 | 0.0661 0.0034 0.0695 | 1.5785</item>
- <item>44 | 1.75 | 0.0617 0.0058 0.0674 | 1.5194</item>
- <item>45 | 1.75 | 0.0602 0.0066 0.0667 | 1.4626</item>
- <item>57 | 1.50 | 0.0586 0.0048 0.0634 | 1.0900</item>
- <item>58 | 1.50 | 0.0555 0.0068 0.0623 | 1.0730</item>
- <item>59 | 1.50 | 0.0544 0.0075 0.0619 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 204s</item>
- <item>Prepare output 13s</item>
- <item>217s</item>
- <item>Jacobian determinant (RMS): 0.011 0.043 0.067 0.094 0.119 | 0.126727</item>
- <item>Template Matching: 0.085 0.222 0.202 0.180 0.163 | 0.163138</item>
- <item>Write result maps: 31s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 36s</item>
- <item>CSF distance: 18s</item>
- <item>PBT2x thickness: 56s</item>
- <item>117s</item>
- <item>Create initial surface 103s</item>
- <item>Topology correction: 106s</item>
- <item>Surface refinement: 106s</item>
- <item>Reduction of surface collisions with optimization: 72s</item>
- <item>Spherical mapping with areal smoothing 97s</item>
- <item>Spherical registration 340s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 46s</item>
- <item>CSF distance: 18s</item>
- <item>PBT2x thickness: 55s</item>
- <item>126s</item>
- <item>Create initial surface 97s</item>
- <item>Topology correction: 107s</item>
- <item>Surface refinement: 89s</item>
- <item>Reduction of surface collisions with optimization: 72s</item>
- <item>Spherical mapping with areal smoothing 97s</item>
- <item>Spherical registration 339s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5660 0.5953 mm</item>
- <item>Surface intensity / position RMSE: 0.0619 / 0.0621</item>
- <item>Euler number / defect number / defect size: 8.0 / 8.5 / 0.30%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19497/ds/sub-140/surf/lh.thickness.sub-140_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19497/ds/sub-140/surf/rh.thickness.sub-140_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_19497/ds/sub-140/sub-140_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1977s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 9s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 30s</item>
- <item>ROI estimation of 'lpba40' atlas 9s</item>
- <item>ROI estimation of 'hammers' atlas 21s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 19s</item>
- <item>ROI estimation of 'anatomy3' atlas 30s</item>
- <item>ROI estimation of 'julichbrain' atlas 38s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 26s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 61s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 90s</item>
- <item>Write results 91s</item>
- <item>372s</item>
- <item>Quality check: 6s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_19497/ds/sub-140/report/catreport_sub-140_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 56 minute(s) and 30 second(s).</item>
- <item>Image Quality Rating (IQR): 80.92% (B-)</item>
- <item>GM volume (GMV): 48.25% (668.27 / 1385.12 ml)</item>
- <item>GM thickness (GMT): 2.57 0.60 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_19497/ds/sub-140/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_19497/ds/sub-140/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_19497/ds/sub-140/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|