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- <F>/var/lib/condor/execute/dir_28706/ds/sub-121/sub-121_T1w.nii</F>
- <Fm>/var/lib/condor/execute/dir_28706/ds/sub-121/mri/msub-121_T1w.nii</Fm>
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- <parameter>
- <opts>
- <tpm>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <WMHC>2</WMHC>
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- <SLC>0</SLC>
- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
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- <nproc>32</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
- <SRP>22</SRP>
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- <add_parahipp>0.1</add_parahipp>
- <colormap>BCGWHw</colormap>
- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- <templates>
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- <tissue_mnr>[0.0116438018158078 0.211706101894379 0.614651024341583 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[14.9823605557706 46.3366456012459 49.6882351649163 30.2428816321977]</tissue_std>
- <tissue_stdr>[0.0343198254704475 0.106142520904541 0.113819949328899 0.069276824593544]</tissue_stdr>
- <contrast>156.95849609375</contrast>
- <contrastr>0.355355560779572</contrastr>
- <NCR>0.150563880801201</NCR>
- <ICR>0.240209817886353</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.19999694824219 2 2]</res_vx_vol>
- <res_RMS>2.06881500480146</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.75299978256226</contrastr>
- <NCR>2.49244737625122</NCR>
- <ICR>1.05557990074158</ICR>
- <SurfaceEulerNumber>1.71428571428571</SurfaceEulerNumber>
- <SurfaceDefectArea>1.21411069096723</SurfaceDefectArea>
- <SurfaceDefectNumber>1.625</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.39524006843567</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.48766446113586</SurfacePositionRMSE>
- <IQR>2.34437804912549</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-110109</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>16</SurfaceEulerNumber>
- <SurfaceDefectArea>0.856442763868913</SurfaceDefectArea>
- <SurfaceDefectNumber>12.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0697620064020157</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0743832215666771</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>16</EC_abs>
- <defect_size>0.856442763868913</defect_size>
- <vol_abs_CGW>[198.216192100345 702.63275199941 489.554881691129 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.465476217052983</vol_abs_WMH>
- <vol_rel_WMH>0.000334777715954725</vol_rel_WMH>
- <surf_TSA>1802.39608632825</surf_TSA>
- <vol_TIV>1390.40382579088</vol_TIV>
- <vol_rel_CGW>[0.142560160166128 0.505344374753674 0.352095465080198 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.69445022618742 0.668888626527949]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.68983483314514 0.872792884433836 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.09714596966167 0.293957418881253 0.330842893841374;2.75962490248015 0.195596397402689 0.420861857944076;3.49296621519075 0.314882291009901 0.24829524821455]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.874873029871546 0.350248495639195 0.623463802540535;4.47310980832387 0.267071790159178 0.376536197459465]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00219364663041</vol_TIV>
- <vol_rel_CGW>[0.5 6.92572512129443 4.17340993319322 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03347777159547</vol_rel_WMH>
- <surf_TSA>8.58634130858852</surf_TSA>
- <SQR>5.67583463857045</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.426297721974661 2 2 7051.52371837616 0.431635448990062]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.0776026919484138]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[817.71519628269 440.468605860302 380.876171269914 664.802790750302 2536.55275746233 7960.50210414022]</SPMvols0>
- <SPMvols1>[720.019025921002 418.583407199067 210.996686136403 469.01124979637 1206.40096417039 9266.32238412515]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[112.963302612305 296.225311279297 443.936187744141]</T3th>
- <Tth>
- <T3th>[0 0 4.79889392852783 112.963302612305 296.225311279297 443.936187744141 609.422607421875 1201.96057128906]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0167011320590973 0.0582790300250053 0.0634583309292793 0 0]</dtc>
- <ll>[0.0813777781620461 0 0.0813777781620461 0;0.199424862718525 0.00887359433672151 0.208298457055246 1892.27624511719;0.199424862718525 0.00887359433672151 0.208298457055246 1892.27624511719]</ll>
- <rmsdtc>[0.0373763702809811 0.0783365592360497 0.0881079062819481]</rmsdtc>
- <rmsgdt>[0.0270446985960007 0.039700448513031 0.0498343892395496]</rmsgdt>
- <rmsdt>0.0881079062819481</rmsdt>
- <dt>0.0634583309292793</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00701964739710093 0.0243917629122734 0.0347011163830757 0.0431033819913864 0.0504360236227512 0.0562778599560261]</dtc>
- <ll>[0.0819802275820569 0 0.0819802275820569 0;0.22004387973138 0.0109270308684371 0.230970910599817 5593.27392578125;0.201894407936786 0.0147792786819589 0.216673686618745 10636.82421875;0.18155024601863 0.0177891324614754 0.199339378480105 19181.5234375;0.164683135707887 0.0211215366123933 0.185804672320281 36949.0234375;0.164683135707887 0.0211215366123933 0.185804672320281 36949.0234375]</ll>
- <rmsdtc>[0.00850206334143877 0.029873862862587 0.0461122766137123 0.0698175951838493 0.0958153530955315 0.103815421462059]</rmsdtc>
- <rmsgdt>[0.00289558642543852 0.011322115547955 0.0266790222376585 0.0474436618387699 0.0675290897488594 0.0737193003296852]</rmsgdt>
- <rmsdt>0.103815421462059</rmsdt>
- <dt>0.0562778599560261</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_28706/ds/sub-121/sub-121_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 67s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 8s</item>
- <item>Initial correction 7s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 7s</item>
- <item>45s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 66s</item>
- <item>SPM preprocessing 1 (estimate 2): 52s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 15s</item>
- <item>Update Segmentation 17s</item>
- <item>Update Skull-Stripping 39s</item>
- <item>Update probability maps 9s</item>
- <item>80s</item>
- <item>Global intensity correction: 15s</item>
- <item>SANLM denoising after intensity normalization (medium): 22s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.09) 13s</item>
- <item>Estimate local tissue thresholds (WM) 19s</item>
- <item>Estimate local tissue thresholds (GM) 24s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 15s</item>
- <item>80s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 11s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.00) 23s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>60s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 30s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.99 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>10s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0820 0.0000 0.0820 | 32.0000</item>
- <item>2 | 2.50 | 0.0800 0.0010 0.0810 | 29.4886</item>
- <item>3 | 2.50 | 0.0795 0.0015 0.0809 | 26.9772</item>
- <item>4 | 2.50 | 0.0792 0.0016 0.0808 | 24.6107</item>
- <item>5 | 2.50 | 0.0789 0.0017 0.0807 | 22.6548</item>
- <item>6 | 2.50 | 0.0787 0.0018 0.0805 | 20.6989</item>
- <item>7 | 2.50 | 0.0785 0.0019 0.0804 | 18.9688</item>
- <item>8 | 2.50 | 0.0783 0.0019 0.0803 | 17.4455</item>
- <item>9 | 2.50 | 0.0781 0.0020 0.0801 | 15.9223</item>
- <item>10 | 2.50 | 0.0779 0.0021 0.0799 | 14.6627</item>
- <item>11 | 2.50 | 0.0776 0.0021 0.0798 | 13.4764</item>
- <item>12 | 2.50 | 0.0774 0.0022 0.0796 | 12.3015</item>
- <item>13 | 2.50 | 0.0771 0.0023 0.0794 | 11.3776</item>
- <item>14 | 2.50 | 0.0769 0.0023 0.0792 | 10.4537</item>
- <item>15 | 2.25 | 0.0761 0.0023 0.0785 | 9.5920</item>
- <item>16 | 2.25 | 0.0733 0.0036 0.0770 | 8.8725</item>
- <item>29 | 2.00 | 0.0751 0.0016 0.0768 | 3.3283</item>
- <item>30 | 2.00 | 0.0693 0.0040 0.0733 | 3.1221</item>
- <item>31 | 2.00 | 0.0673 0.0049 0.0722 | 2.9160</item>
- <item>43 | 1.75 | 0.0664 0.0028 0.0692 | 1.5785</item>
- <item>44 | 1.75 | 0.0620 0.0051 0.0671 | 1.5194</item>
- <item>45 | 1.75 | 0.0605 0.0059 0.0664 | 1.4626</item>
- <item>57 | 1.50 | 0.0592 0.0043 0.0634 | 1.0900</item>
- <item>58 | 1.50 | 0.0560 0.0064 0.0623 | 1.0730</item>
- <item>59 | 1.50 | 0.0549 0.0070 0.0619 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 155s</item>
- <item>Prepare output 9s</item>
- <item>165s</item>
- <item>Jacobian determinant (RMS): 0.009 0.030 0.046 0.070 0.096 | 0.103815</item>
- <item>Template Matching: 0.082 0.220 0.202 0.182 0.165 | 0.164683</item>
- <item>Write result maps: 21s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 43s</item>
- <item>91s</item>
- <item>Create initial surface 82s</item>
- <item>Topology correction: 85s</item>
- <item>Surface refinement: 67s</item>
- <item>Reduction of surface collisions with optimization: 60s</item>
- <item>Spherical mapping with areal smoothing 73s</item>
- <item>Spherical registration 293s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 26s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 42s</item>
- <item>87s</item>
- <item>Create initial surface 80s</item>
- <item>Topology correction: 83s</item>
- <item>Surface refinement: 82s</item>
- <item>Reduction of surface collisions with optimization: 62s</item>
- <item>Spherical mapping with areal smoothing 73s</item>
- <item>Spherical registration 278s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6943 0.6688 mm</item>
- <item>Surface intensity / position RMSE: 0.0698 / 0.0744</item>
- <item>Euler number / defect number / defect size: 16.0 / 12.5 / 0.86%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_28706/ds/sub-121/surf/lh.thickness.sub-121_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_28706/ds/sub-121/surf/rh.thickness.sub-121_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_28706/ds/sub-121/sub-121_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1580s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 24s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 17s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 22s</item>
- <item>ROI estimation of 'julichbrain' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 48s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 71s</item>
- <item>Write results 72s</item>
- <item>292s</item>
- <item>Quality check: 4s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_28706/ds/sub-121/report/catreport_sub-121_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 45 minute(s) and 10 second(s).</item>
- <item>Image Quality Rating (IQR): 81.56% (B-)</item>
- <item>GM volume (GMV): 50.53% (702.63 / 1390.40 ml)</item>
- <item>GM thickness (GMT): 2.69 0.67 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_28706/ds/sub-121/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_28706/ds/sub-121/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_28706/ds/sub-121/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|