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- <parameter>
- <opts>
- <tpm>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <LAB>
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- <optimal>[1 0.3]</optimal>
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- </shootingtpms>
- <templates>
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- <tissue_mnr>[0.0324980840086937 0.210421502590179 0.654967606067657 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.581057812014 21.3229317180622 17.4224216554332 10.1485893606258]</tissue_std>
- <tissue_stdr>[0.0296086743474007 0.137816146016121 0.112606048583984 0.0655932053923607]</tissue_stdr>
- <contrast>57.0299491882324</contrast>
- <contrastr>0.356621921062469</contrastr>
- <NCR>0.138058349490166</NCR>
- <ICR>0.366922438144684</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.19999694824219 2 2]</res_vx_vol>
- <res_RMS>2.06881500480146</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.73400449752808</contrastr>
- <NCR>2.31292486190796</NCR>
- <ICR>1.36984729766846</ICR>
- <SurfaceEulerNumber>2.22448979591837</SurfaceEulerNumber>
- <SurfaceDefectArea>1.17521885046414</SurfaceDefectArea>
- <SurfaceDefectNumber>1.875</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.39602875709534</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.3620537519455</SurfacePositionRMSE>
- <IQR>2.21398238402342</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-111524</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>26</SurfaceEulerNumber>
- <SurfaceDefectArea>0.700875401856562</SurfaceDefectArea>
- <SurfaceDefectNumber>17.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0698014348745346</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0681026875972748</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>26</EC_abs>
- <defect_size>0.700875401856562</defect_size>
- <vol_abs_CGW>[248.664343689085 695.990016508095 466.191267825796 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.487795401778876</vol_abs_WMH>
- <vol_rel_WMH>0.000345746828774191</vol_rel_WMH>
- <surf_TSA>1874.43374425873</surf_TSA>
- <vol_TIV>1410.84562802298</vol_TIV>
- <vol_rel_CGW>[0.176251985865767 0.493314082479306 0.330433931654927 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.6090379021134 0.618242166281243]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.60292983055115 0.748113990954723 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.02827286875422 0.248440660929911 0.30513565317051;2.63443761722625 0.175219803239419 0.421509540840859;3.28676385616691 0.267395535179074 0.273354805988631]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.949830052700056 0.361075038168984 0.558198233181245;4.20698015969079 0.31835707366058 0.441801766818755]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00280196368143</vol_TIV>
- <vol_rel_CGW>[1.01530147029035 6.70966383763122 3.7843737725382 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03457468287742</vol_rel_WMH>
- <surf_TSA>8.60894531295542</surf_TSA>
- <SQR>5.49392409513408</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.116612319722553 22 3 10857.9474382401 0.54572454258251]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0361649766564369 0.037951834499836 0.125098258256912]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[845.215805193643 429.895709546257 461.807778220143 2763.51979948443 1871.56888970831 6695.60680581698]</SPMvols0>
- <SPMvols1>[725.37821848692 403.463147389042 246.551186228225 3900.14792514711 1685.90112647573 5330.55116800124]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[41.8566017150879 108.579803466797 163.223907470703]</T3th>
- <Tth>
- <T3th>[0 0 6.32338047027588 41.8566017150879 108.579803466797 163.223907470703 223.907562255859 570.084655761719]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0199451576918364 0.071880429983139 0.0792658925056458 0 0]</dtc>
- <ll>[0.0853347992028843 0 0.0853347992028843 0;0.203268538860857 0.0106678421185369 0.213936380979394 2274.89599609375;0.203268538860857 0.0106678421185369 0.213936380979394 2274.89599609375]</ll>
- <rmsdtc>[0.0436212532222271 0.0954575538635254 0.106334775686264]</rmsdtc>
- <rmsgdt>[0.0311661530286074 0.0443073995411396 0.05488371104002]</rmsgdt>
- <rmsdt>0.106334775686264</rmsdt>
- <dt>0.0792658925056458</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00969092175364494 0.0398828610777855 0.0513310469686985 0.0598359331488609 0.0666058957576752 0.07512366771698]</dtc>
- <ll>[0.087107676375132 0 0.087107676375132 0;0.223790369352869 0.0184335851648352 0.242223954517705 9435.69140625;0.207603614362412 0.0195926026660664 0.227196217028478 14101.03125;0.186298743498857 0.0215039773997192 0.207802720898577 23187.13671875;0.169023847673969 0.0246739928633615 0.19369784053733 43163.5234375;0.169023847673969 0.0246739928633615 0.19369784053733 43163.5234375]</ll>
- <rmsdtc>[0.0113977249711752 0.0421694666147232 0.0651567131280899 0.0898120105266571 0.114948816597462 0.121805742383003]</rmsdtc>
- <rmsgdt>[0.00338015938177705 0.0136240953579545 0.0305224768817425 0.0522646978497505 0.0734571218490601 0.0783574804663658]</rmsgdt>
- <rmsdt>0.121805742383003</rmsdt>
- <dt>0.07512366771698</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_48883/ds/sub-104/sub-104_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 96s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 14s</item>
- <item>Initial correction 11s</item>
- <item>Refine background 5s</item>
- <item>Final correction 7s</item>
- <item>Final scaling 11s</item>
- <item>63s</item>
- <item>Correct center-of-mass 6s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 79s</item>
- <item>SPM preprocessing 1 (estimate 2): 64s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 20s</item>
- <item>Update Segmentation 23s</item>
- <item>Update Skull-Stripping 48s</item>
- <item>Update probability maps 11s</item>
- <item>102s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 7s</item>
- <item>Fast Optimized Shooting registration 43s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 16s</item>
- <item>Estimate local tissue thresholds (WM) 25s</item>
- <item>Estimate local tissue thresholds (GM) 36s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 36s</item>
- <item>123s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 13s</item>
- <item>Blood vessel detection 10s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.02) 25s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 5s</item>
- <item>69s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 34s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0871 0.0000 0.0871 | 32.0000</item>
- <item>2 | 2.50 | 0.0841 0.0013 0.0854 | 29.4886</item>
- <item>3 | 2.50 | 0.0832 0.0020 0.0852 | 26.9772</item>
- <item>4 | 2.50 | 0.0827 0.0023 0.0850 | 24.6107</item>
- <item>5 | 2.50 | 0.0824 0.0024 0.0848 | 22.6548</item>
- <item>6 | 2.50 | 0.0821 0.0025 0.0846 | 20.6989</item>
- <item>7 | 2.50 | 0.0817 0.0027 0.0844 | 18.9688</item>
- <item>8 | 2.50 | 0.0814 0.0028 0.0842 | 17.4455</item>
- <item>9 | 2.50 | 0.0810 0.0029 0.0839 | 15.9223</item>
- <item>10 | 2.50 | 0.0807 0.0030 0.0836 | 14.6627</item>
- <item>11 | 2.50 | 0.0803 0.0031 0.0834 | 13.4764</item>
- <item>12 | 2.50 | 0.0799 0.0031 0.0831 | 12.3015</item>
- <item>13 | 2.50 | 0.0795 0.0033 0.0828 | 11.3776</item>
- <item>14 | 2.50 | 0.0792 0.0033 0.0825 | 10.4537</item>
- <item>15 | 2.25 | 0.0807 0.0034 0.0841 | 9.5920</item>
- <item>16 | 2.25 | 0.0770 0.0052 0.0822 | 8.8725</item>
- <item>17 | 2.25 | 0.0755 0.0059 0.0814 | 8.1530</item>
- <item>18 | 2.25 | 0.0746 0.0061 0.0807 | 7.5234</item>
- <item>29 | 2.00 | 0.0772 0.0030 0.0802 | 3.3283</item>
- <item>30 | 2.00 | 0.0714 0.0055 0.0769 | 3.1221</item>
- <item>31 | 2.00 | 0.0692 0.0065 0.0757 | 2.9160</item>
- <item>43 | 1.75 | 0.0685 0.0037 0.0723 | 1.5785</item>
- <item>44 | 1.75 | 0.0638 0.0063 0.0701 | 1.5194</item>
- <item>45 | 1.75 | 0.0621 0.0072 0.0693 | 1.4626</item>
- <item>57 | 1.50 | 0.0610 0.0053 0.0662 | 1.0900</item>
- <item>58 | 1.50 | 0.0575 0.0075 0.0650 | 1.0730</item>
- <item>59 | 1.50 | 0.0563 0.0082 0.0646 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 212s</item>
- <item>Prepare output 14s</item>
- <item>225s</item>
- <item>Jacobian determinant (RMS): 0.011 0.042 0.065 0.090 0.115 | 0.121806</item>
- <item>Template Matching: 0.087 0.224 0.208 0.186 0.169 | 0.169024</item>
- <item>Write result maps: 29s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 46s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 58s</item>
- <item>131s</item>
- <item>Create initial surface 98s</item>
- <item>Topology correction: 109s</item>
- <item>Surface refinement: 67s</item>
- <item>Reduction of surface collisions with optimization: 75s</item>
- <item>Spherical mapping with areal smoothing 95s</item>
- <item>Spherical registration 346s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 36s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 57s</item>
- <item>118s</item>
- <item>Create initial surface 93s</item>
- <item>Topology correction: 106s</item>
- <item>Surface refinement: 85s</item>
- <item>Reduction of surface collisions with optimization: 72s</item>
- <item>Spherical mapping with areal smoothing 101s</item>
- <item>Spherical registration 322s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6092 0.6180 mm</item>
- <item>Surface intensity / position RMSE: 0.0698 / 0.0681</item>
- <item>Euler number / defect number / defect size: 26.0 / 17.5 / 0.70%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_48883/ds/sub-104/surf/lh.thickness.sub-104_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_48883/ds/sub-104/surf/rh.thickness.sub-104_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_48883/ds/sub-104/sub-104_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1927s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 9s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 33s</item>
- <item>ROI estimation of 'lpba40' atlas 10s</item>
- <item>ROI estimation of 'hammers' atlas 23s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 20s</item>
- <item>ROI estimation of 'anatomy3' atlas 28s</item>
- <item>ROI estimation of 'julichbrain' atlas 37s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 57s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 85s</item>
- <item>Write results 86s</item>
- <item>366s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_48883/ds/sub-104/report/catreport_sub-104_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 56 minute(s) and 20 second(s).</item>
- <item>Image Quality Rating (IQR): 82.86% (B-)</item>
- <item>GM volume (GMV): 49.33% (695.99 / 1410.85 ml)</item>
- <item>GM thickness (GMT): 2.61 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_48883/ds/sub-104/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_48883/ds/sub-104/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_48883/ds/sub-104/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|