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- <fnames>.._2241/ds/sub-58/sub-58_T1w</fnames>
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- <parameter>
- <opts>
- <tpm>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
- <SRP>22</SRP>
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- <add_parahipp>0.1</add_parahipp>
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- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>[false]</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <new_release>0</new_release>
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- <shooting>
- <shootingtpm>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- <templates>
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- </templates>
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- <tissue_mnr>[0.0262070707976818 0.224799185991287 0.661234676837921 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[13.9949983755962 19.5203835848643 18.4993810230245 10.1274348484767]</tissue_std>
- <tissue_stdr>[0.0875089466571808 0.122058480978012 0.115674279630184 0.0633255615830421]</tissue_stdr>
- <contrast>57.1328811645508</contrast>
- <contrastr>0.347882330417633</contrastr>
- <NCR>0.153046905994415</NCR>
- <ICR>0.338524788618088</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.19999694824219 2 2]</res_vx_vol>
- <res_RMS>2.06881500480146</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.86509847640991</contrastr>
- <NCR>2.52809238433838</NCR>
- <ICR>1.29941666126251</ICR>
- <SurfaceEulerNumber>1.71428571428571</SurfaceEulerNumber>
- <SurfaceDefectArea>1.07622091069032</SurfaceDefectArea>
- <SurfaceDefectNumber>1.775</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.37550354003906</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.31217861175537</SurfacePositionRMSE>
- <IQR>2.37198509945068</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-110805</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>16</SurfaceEulerNumber>
- <SurfaceDefectArea>0.304883642761274</SurfaceDefectArea>
- <SurfaceDefectNumber>15.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0687751770019531</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0656089335680008</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>16</EC_abs>
- <defect_size>0.304883642761274</defect_size>
- <vol_abs_CGW>[217.838620567082 749.062924063709 502.061967871154 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.378257122353946</vol_abs_WMH>
- <vol_rel_WMH>0.000257499331422941</vol_rel_WMH>
- <surf_TSA>2030.91237772979</surf_TSA>
- <vol_TIV>1468.96351250194</vol_TIV>
- <vol_rel_CGW>[0.14829409901139 0.509926160649084 0.341779740339527 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.6075256789388 0.616223242784804]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.59335947036743 0.766977190093284 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.00525801396904 0.253122444437459 0.297945289349301;2.62062357257627 0.177077703869653 0.43438517865452;3.27627113855351 0.282012282231873 0.26766953199618]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.950037468482587 0.360051250346421 0.495840423520514;4.28160994311736 0.34189222754922 0.504159576479486]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.11247301184812</vol_TIV>
- <vol_rel_CGW>[0.513184249486169 7.00801294269187 3.98814188828173 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02574993314229</vol_rel_WMH>
- <surf_TSA>8.62240216131852</surf_TSA>
- <SQR>5.73875331817807</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.178824147870464 62 9 10093.2856989517 0.53922740395185]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0327578037977219 0.0361670926213264 0.0978806838393211]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[878.315035357995 461.583762452458 409.863939294404 5122.52933930685 5040.07707721112 1591.48547940656]</SPMvols0>
- <SPMvols1>[767.111845693551 433.538537826389 225.374507368469 4804.52591454758 4055.77796965479 2005.10830760441]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[43.1358985900879 112.616401672363 167.366592407227]</T3th>
- <Tth>
- <T3th>[0 0 1.72069704532623 43.1358985900879 112.616401672363 167.366592407227 229.48193359375 648.045349121094]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0214745122939348 0.0766420960426331 0.085072860121727 0 0]</dtc>
- <ll>[0.0863424776648941 0 0.0863424776648941 0;0.197139799523325 0.0106932570238789 0.207833056547204 2280.31567382812;0.197139799523325 0.0106932570238789 0.207833056547204 2280.31567382812]</ll>
- <rmsdtc>[0.0464265197515488 0.10409851372242 0.11428315192461]</rmsdtc>
- <rmsgdt>[0.0330245494842529 0.0461693145334721 0.0562109872698784]</rmsgdt>
- <rmsdt>0.11428315192461</rmsdt>
- <dt>0.085072860121727</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.010353134945035 0.038284458220005 0.0527334101498127 0.0608503259718418 0.0674940645694733 0.0771053209900856]</dtc>
- <ll>[0.0872682215401877 0 0.0872682215401877 0;0.222570451770452 0.0158893582112332 0.238459809981685 8133.365234375;0.200813485116269 0.0177190735777818 0.218532558694051 12752.6298828125;0.180946386324601 0.0192985190511995 0.2002449053758 20809.052734375;0.164249975562394 0.0221448345831287 0.186394810145522 38739.1328125;0.164249975562394 0.0221448345831287 0.186394810145522 38739.1328125]</ll>
- <rmsdtc>[0.0124438162893057 0.045931302011013 0.0683984234929085 0.0956625044345856 0.122262544929981 0.129680842161179]</rmsdtc>
- <rmsgdt>[0.00347293680533767 0.0138433249667287 0.0304356385022402 0.0525093413889408 0.0719751566648483 0.0777184143662453]</rmsgdt>
- <rmsdt>0.129680842161179</rmsdt>
- <dt>0.0771053209900856</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_2241/ds/sub-58/sub-58_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 85s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 8s</item>
- <item>Initial correction 7s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 7s</item>
- <item>44s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 8s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 63s</item>
- <item>SPM preprocessing 1 (estimate 2): 49s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 16s</item>
- <item>Update Segmentation 18s</item>
- <item>Update Skull-Stripping 39s</item>
- <item>Update probability maps 9s</item>
- <item>81s</item>
- <item>Global intensity correction: 15s</item>
- <item>SANLM denoising after intensity normalization (medium): 17s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.01) 13s</item>
- <item>Estimate local tissue thresholds (WM) 20s</item>
- <item>Estimate local tissue thresholds (GM) 24s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 21s</item>
- <item>86s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 14s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.00) 23s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>65s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 31s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.07,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0873 0.0000 0.0873 | 32.0000</item>
- <item>2 | 2.50 | 0.0836 0.0015 0.0851 | 29.4886</item>
- <item>3 | 2.50 | 0.0826 0.0022 0.0848 | 26.9772</item>
- <item>4 | 2.50 | 0.0820 0.0025 0.0846 | 24.6107</item>
- <item>5 | 2.50 | 0.0816 0.0027 0.0843 | 22.6548</item>
- <item>6 | 2.50 | 0.0813 0.0028 0.0841 | 20.6989</item>
- <item>7 | 2.50 | 0.0809 0.0029 0.0838 | 18.9688</item>
- <item>8 | 2.50 | 0.0805 0.0031 0.0836 | 17.4455</item>
- <item>9 | 2.50 | 0.0801 0.0032 0.0833 | 15.9223</item>
- <item>10 | 2.50 | 0.0797 0.0033 0.0830 | 14.6627</item>
- <item>11 | 2.50 | 0.0793 0.0034 0.0827 | 13.4764</item>
- <item>12 | 2.50 | 0.0789 0.0034 0.0824 | 12.3015</item>
- <item>13 | 2.50 | 0.0785 0.0036 0.0821 | 11.3776</item>
- <item>14 | 2.50 | 0.0781 0.0036 0.0817 | 10.4537</item>
- <item>15 | 2.25 | 0.0774 0.0037 0.0811 | 9.5920</item>
- <item>16 | 2.25 | 0.0742 0.0053 0.0795 | 8.8725</item>
- <item>29 | 2.00 | 0.0752 0.0024 0.0776 | 3.3283</item>
- <item>30 | 2.00 | 0.0690 0.0049 0.0739 | 3.1221</item>
- <item>31 | 2.00 | 0.0669 0.0059 0.0728 | 2.9160</item>
- <item>43 | 1.75 | 0.0659 0.0034 0.0694 | 1.5785</item>
- <item>44 | 1.75 | 0.0617 0.0056 0.0674 | 1.5194</item>
- <item>45 | 1.75 | 0.0603 0.0064 0.0667 | 1.4626</item>
- <item>57 | 1.50 | 0.0589 0.0047 0.0636 | 1.0900</item>
- <item>58 | 1.50 | 0.0558 0.0067 0.0625 | 1.0730</item>
- <item>59 | 1.50 | 0.0547 0.0074 0.0621 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 158s</item>
- <item>Prepare output 10s</item>
- <item>168s</item>
- <item>Jacobian determinant (RMS): 0.012 0.046 0.068 0.096 0.122 | 0.129681</item>
- <item>Template Matching: 0.087 0.223 0.201 0.181 0.164 | 0.164250</item>
- <item>Write result maps: 22s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 30s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 44s</item>
- <item>95s</item>
- <item>Create initial surface 81s</item>
- <item>Topology correction: 92s</item>
- <item>Surface refinement: 75s</item>
- <item>Reduction of surface collisions with optimization: 71s</item>
- <item>Spherical mapping with areal smoothing 126s</item>
- <item>Spherical registration 264s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 29s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 40s</item>
- <item>88s</item>
- <item>Create initial surface 72s</item>
- <item>Topology correction: 86s</item>
- <item>Surface refinement: 98s</item>
- <item>Reduction of surface collisions with optimization: 67s</item>
- <item>Spherical mapping with areal smoothing 72s</item>
- <item>Spherical registration 247s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6075 0.6162 mm</item>
- <item>Surface intensity / position RMSE: 0.0688 / 0.0656</item>
- <item>Euler number / defect number / defect size: 16.0 / 15.5 / 0.30%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2241/ds/sub-58/surf/lh.thickness.sub-58_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2241/ds/sub-58/surf/rh.thickness.sub-58_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2241/ds/sub-58/sub-58_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1617s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 25s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 17s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 22s</item>
- <item>ROI estimation of 'julichbrain' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 47s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 70s</item>
- <item>Write results 71s</item>
- <item>290s</item>
- <item>Quality check: 4s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2241/ds/sub-58/report/catreport_sub-58_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 46 minute(s) and 10 second(s).</item>
- <item>Image Quality Rating (IQR): 81.28% (B-)</item>
- <item>GM volume (GMV): 50.99% (749.06 / 1468.96 ml)</item>
- <item>GM thickness (GMT): 2.61 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2241/ds/sub-58/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2241/ds/sub-58/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2241/ds/sub-58/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|