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- <parameter>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <print>2</print>
- <fontsize>10</fontsize>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <optimal>[1 0.3]</optimal>
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- <templates>
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- </templates>
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- <tissue_mn>[4.89900016784668 73.6348266601562 228.519271850586 372.345855712891]</tissue_mn>
- <tissue_mnr>[0.0131571236997843 0.197759225964546 0.613728523254395 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.79037492116005 38.8863518556212 42.9947307776388 26.1086056491456]</tissue_std>
- <tissue_stdr>[0.0130369197577238 0.105828508734703 0.117009393870831 0.0710541009902954]</tissue_stdr>
- <contrast>132.201034545898</contrast>
- <contrastr>0.355049043893814</contrastr>
- <NCR>0.153851449489594</NCR>
- <ICR>0.215077787637711</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.20000088209706 2.00000001743458 1.99999997521941]</res_vx_vol>
- <res_RMS>2.06881639686753</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.75759768486023</contrastr>
- <NCR>2.53964185714722</NCR>
- <ICR>0.993248462677002</ICR>
- <SurfaceEulerNumber>1.20408163265306</SurfaceEulerNumber>
- <SurfaceDefectArea>1.01005805189843</SurfaceDefectArea>
- <SurfaceDefectNumber>1.425</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.31558561325073</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.28955543041229</SurfacePositionRMSE>
- <IQR>2.38103119772857</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-111015</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>6</SurfaceEulerNumber>
- <SurfaceDefectArea>0.0402322075937078</SurfaceDefectArea>
- <SurfaceDefectNumber>8.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0657792836427689</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0644777715206146</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>6</EC_abs>
- <defect_size>0.0402322075937078</defect_size>
- <vol_abs_CGW>[265.440984723971 719.19680312342 512.419950344897 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.791366196907568</vol_abs_WMH>
- <vol_rel_WMH>0.000528614345805494</vol_rel_WMH>
- <surf_TSA>1992.95640524462</surf_TSA>
- <vol_TIV>1497.05773819229</vol_TIV>
- <vol_rel_CGW>[0.177308448399922 0.480406857247776 0.342284694352303 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.5360910582568 0.627927009579094]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.50264453887939 0.802301868739637 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.94432943977914 0.259017793558145 0.3167025611724;2.54766095255016 0.17934914590593 0.432071479251301;3.24593911357485 0.291161058423959 0.251225959576298]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.887798603663554 0.299978231991478 0.487199454881729;4.29554187364441 0.372087218973411 0.512800545118271]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.2211650577128</vol_TIV>
- <vol_rel_CGW>[1.03427529453882 6.47785303965114 3.9972107462698 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.05286143458055</vol_rel_WMH>
- <surf_TSA>8.62115841631961</surf_TSA>
- <SQR>5.31115626968714</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.281217066074047 1 1 8834.76350987523 0.454314925882155]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0095126535743475 0 0.131699904799461]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[841.367588154821 462.803304740769 488.92740061485 4249.37204591598 6407.0160274644 765.769022811557]</SPMvols0>
- <SPMvols1>[737.327545232043 437.95039094059 272.564501280938 116.463879233591 8.67494854618397 10718.8557091906]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[84.8426971435547 246.881896972656 369.997314453125]</T3th>
- <Tth>
- <T3th>[0 0 42.4213485717773 84.8426971435547 246.881896972656 369.997314453125 512.574584960938 1136.08728027344]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.022595101967454 0.0789201706647873 0.087704598903656 0 0]</dtc>
- <ll>[0.087196145548063 0 0.087196145548063 0;0.200278548919568 0.0111646995681818 0.21144324848775 2380.84985351562;0.200278548919568 0.0111646995681818 0.21144324848775 2380.84985351562]</ll>
- <rmsdtc>[0.0462588109076023 0.105231292545795 0.116612285375595]</rmsdtc>
- <rmsgdt>[0.0324501767754555 0.0466898791491985 0.0575630031526089]</rmsgdt>
- <rmsdt>0.116612285375595</rmsdt>
- <dt>0.087704598903656</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0103648053482175 0.0396277979016304 0.0527992844581604 0.0614345222711563 0.0679566487669945 0.0762970149517059]</dtc>
- <ll>[0.0872960107883408 0 0.0872960107883408 0;0.2220961996337 0.0167753968253968 0.238871596459096 8586.90625;0.203179948194556 0.0178437477421524 0.221023695936708 12842.359375;0.182635431389297 0.019417028255046 0.202052459644343 20936.837890625;0.165698153831731 0.0220907096616578 0.187788863493389 38644.44921875;0.165698153831731 0.0220907096616578 0.187788863493389 38644.44921875]</ll>
- <rmsdtc>[0.0119749633595347 0.0436003766953945 0.0651603192090988 0.0893346294760704 0.11261647939682 0.119247555732727]</rmsdtc>
- <rmsgdt>[0.00335916643962264 0.0129339229315519 0.02811517752707 0.0481339693069458 0.0659386217594147 0.0712295323610306]</rmsgdt>
- <rmsdt>0.119247555732727</rmsdt>
- <dt>0.0762970149517059</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_5264/ds/sub-141/sub-141_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 82s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 9s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 9s</item>
- <item>48s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 67s</item>
- <item>SPM preprocessing 1 (estimate 2): 55s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 15s</item>
- <item>Update Segmentation 17s</item>
- <item>Update Skull-Stripping 38s</item>
- <item>Update probability maps 8s</item>
- <item>78s</item>
- <item>Global intensity correction: 15s</item>
- <item>SANLM denoising after intensity normalization (medium): 11s</item>
- <item>Fast Optimized Shooting registration 31s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 13s</item>
- <item>Estimate local tissue thresholds (WM) 18s</item>
- <item>Estimate local tissue thresholds (GM) 26s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 29s</item>
- <item>94s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 14s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.07) 23s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>63s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 32s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.07,0.99 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>10s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0873 0.0000 0.0873 | 32.0000</item>
- <item>2 | 2.50 | 0.0840 0.0014 0.0854 | 29.4886</item>
- <item>3 | 2.50 | 0.0831 0.0021 0.0851 | 26.9772</item>
- <item>4 | 2.50 | 0.0826 0.0023 0.0849 | 24.6107</item>
- <item>5 | 2.50 | 0.0822 0.0025 0.0847 | 22.6548</item>
- <item>6 | 2.50 | 0.0819 0.0026 0.0845 | 20.6989</item>
- <item>7 | 2.50 | 0.0816 0.0027 0.0843 | 18.9688</item>
- <item>8 | 2.50 | 0.0812 0.0028 0.0841 | 17.4455</item>
- <item>9 | 2.50 | 0.0809 0.0029 0.0838 | 15.9223</item>
- <item>10 | 2.50 | 0.0805 0.0030 0.0836 | 14.6627</item>
- <item>11 | 2.50 | 0.0802 0.0031 0.0833 | 13.4764</item>
- <item>12 | 2.50 | 0.0798 0.0032 0.0830 | 12.3015</item>
- <item>13 | 2.50 | 0.0794 0.0033 0.0827 | 11.3776</item>
- <item>14 | 2.50 | 0.0791 0.0033 0.0824 | 10.4537</item>
- <item>15 | 2.25 | 0.0787 0.0034 0.0821 | 9.5920</item>
- <item>16 | 2.25 | 0.0754 0.0050 0.0804 | 8.8725</item>
- <item>17 | 2.25 | 0.0740 0.0056 0.0796 | 8.1530</item>
- <item>29 | 2.00 | 0.0758 0.0026 0.0783 | 3.3283</item>
- <item>30 | 2.00 | 0.0698 0.0050 0.0748 | 3.1221</item>
- <item>31 | 2.00 | 0.0677 0.0059 0.0737 | 2.9160</item>
- <item>43 | 1.75 | 0.0667 0.0034 0.0701 | 1.5785</item>
- <item>44 | 1.75 | 0.0623 0.0057 0.0680 | 1.5194</item>
- <item>45 | 1.75 | 0.0609 0.0065 0.0674 | 1.4626</item>
- <item>57 | 1.50 | 0.0593 0.0047 0.0641 | 1.0900</item>
- <item>58 | 1.50 | 0.0562 0.0067 0.0630 | 1.0730</item>
- <item>59 | 1.50 | 0.0552 0.0074 0.0626 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 159s</item>
- <item>Prepare output 10s</item>
- <item>169s</item>
- <item>Jacobian determinant (RMS): 0.012 0.044 0.065 0.089 0.113 | 0.119248</item>
- <item>Template Matching: 0.087 0.222 0.203 0.183 0.166 | 0.165698</item>
- <item>Write result maps: 22s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 30s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 44s</item>
- <item>95s</item>
- <item>Create initial surface 85s</item>
- <item>Topology correction: 92s</item>
- <item>Surface refinement: 106s</item>
- <item>Reduction of surface collisions with optimization: 67s</item>
- <item>Spherical mapping with areal smoothing 79s</item>
- <item>Spherical registration 290s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 30s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 42s</item>
- <item>93s</item>
- <item>Create initial surface 82s</item>
- <item>Topology correction: 87s</item>
- <item>Surface refinement: 101s</item>
- <item>Reduction of surface collisions with optimization: 66s</item>
- <item>Spherical mapping with areal smoothing 74s</item>
- <item>Spherical registration 269s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5361 0.6274 mm</item>
- <item>Surface intensity / position RMSE: 0.0658 / 0.0645</item>
- <item>Euler number / defect number / defect size: 6.0 / 8.5 / 0.04%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_5264/ds/sub-141/surf/lh.thickness.sub-141_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_5264/ds/sub-141/surf/rh.thickness.sub-141_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_5264/ds/sub-141/sub-141_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1674s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 25s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 18s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 22s</item>
- <item>ROI estimation of 'julichbrain' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 47s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 72s</item>
- <item>Write results 73s</item>
- <item>296s</item>
- <item>Quality check: 4s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_5264/ds/sub-141/report/catreport_sub-141_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 47 minute(s) and 21 second(s).</item>
- <item>Image Quality Rating (IQR): 81.19% (B-)</item>
- <item>GM volume (GMV): 48.04% (719.20 / 1497.06 ml)</item>
- <item>GM thickness (GMT): 2.54 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_5264/ds/sub-141/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_5264/ds/sub-141/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_5264/ds/sub-141/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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