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- <Fm>/var/lib/condor/execute/dir_2771322/ds/sub-14/mri/msub-14_T1w.nii</Fm>
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- <fnames>..71322/ds/sub-14/sub-14_T1w</fnames>
- </filedata>
- <parameter>
- <opts>
- <tpm>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii</item>
- </tpm>
- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- </opts>
- <extopts>
- <uhrlim>1.4</uhrlim>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <WMHC>2</WMHC>
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- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
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- <nproc>64</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
- <vox>1.5</vox>
- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
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- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <td>
- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <PH>25</PH>
- <LE>27</LE>
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- <new_release>0</new_release>
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- <shooting>
- <shootingtpm>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
- </restypes>
- <LASmyostr>0</LASmyostr>
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- </shootingtpms>
- <templates>
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- </templates>
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- <tissue_mnr>[0.0290342699736357 0.187335401773453 0.640041470527649 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[6.22023685866819 17.197542875419 16.6911943400854 9.86622002614982]</tissue_std>
- <tissue_stdr>[0.0427194349467754 0.118109539151192 0.114632032811642 0.0677593722939491]</tissue_stdr>
- <contrast>53.8642234802246</contrast>
- <contrastr>0.359188884496689</contrastr>
- <NCR>0.146793082356453</NCR>
- <ICR>0.321507424116135</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.20001020115542 1.99999998676418 2]</res_vx_vol>
- <res_RMS>2.0688196983018</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.69549989700317</contrastr>
- <NCR>2.43831586837769</NCR>
- <ICR>1.25721085071564</ICR>
- <SurfaceEulerNumber>2.63265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.3718742035428</SurfaceDefectArea>
- <SurfaceDefectNumber>1.825</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.41074323654175</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.67678618431091</SurfacePositionRMSE>
- <IQR>2.30343320956406</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220703-111601</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>34</SurfaceEulerNumber>
- <SurfaceDefectArea>1.48749681417121</SurfaceDefectArea>
- <SurfaceDefectNumber>16.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0705371648073196</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0838393121957779</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>34</EC_abs>
- <defect_size>1.48749681417121</defect_size>
- <vol_abs_CGW>[207.079535311632 707.830916459302 535.661280896418 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.829580705526348</vol_abs_WMH>
- <vol_rel_WMH>0.000571899125595734</vol_rel_WMH>
- <surf_TSA>1885.84204047909</surf_TSA>
- <vol_TIV>1450.57173266735</vol_TIV>
- <vol_rel_CGW>[0.142757183700835 0.487966848187316 0.369275968111849 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.53464884302132 0.651627858679911]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.53588318824768 0.849544328426727 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.85920656897263 0.305425009016187 0.261390686182806;2.54087073150267 0.188344224909015 0.46457485308063;3.25714682522582 0.3140836849558 0.274034460736564]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.744795822989404 0.265314006729382 0.583593141075604;4.29290662026037 0.338243491114328 0.416406858924396]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.06068959657711</vol_TIV>
- <vol_rel_CGW>[0.5 6.61362873899634 4.48196781810073 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.05718991255957</vol_rel_WMH>
- <surf_TSA>8.61106684319393</surf_TSA>
- <SQR>5.43790269385689</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.18730481279211 37 7 9989.10775206066 0.477419319574843]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0384265184402466 0.0412852019071579 0.0933455303311348]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[857.780349878145 476.373430577141 396.596044169827 943.111420442592 2486.52056354327 7807.03222331903]</SPMvols0>
- <SPMvols1>[746.883560496097 450.331961712633 211.646402740771 1348.80942442155 2138.10521706573 7395.66412444763]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[38.9824981689453 101.05549621582 153.01789855957]</T3th>
- <Tth>
- <T3th>[0 0 6.8528904914856 38.9824981689453 101.05549621582 153.01789855957 210.035598754883 587.902465820312]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0194823816418648 0.0764294415712357 0.085042916238308 0 0]</dtc>
- <ll>[0.0824859179511648 0 0.0824859179511648 0;0.193401964057107 0.0105143062779311 0.203916270335038 2242.15478515625;0.193401964057107 0.0105143062779311 0.203916270335038 2242.15478515625]</ll>
- <rmsdtc>[0.0436715260148048 0.103956326842308 0.115572527050972]</rmsdtc>
- <rmsgdt>[0.0310579743236303 0.0443019978702068 0.0547297410666943]</rmsgdt>
- <rmsdt>0.115572527050972</rmsdt>
- <dt>0.085042916238308</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00970389787107706 0.0378588140010834 0.0548547878861427 0.0633794441819191 0.0692906975746155 0.0789667814970016]</dtc>
- <ll>[0.0835409603330273 0 0.0835409603330273 0;0.222360363247863 0.0140370936355311 0.236397456883394 7185.2373046875;0.200636113820528 0.0175462206909674 0.218182334511496 12628.2255859375;0.179089581524884 0.0198599660498464 0.198949547574731 21414.4453125;0.16190055337602 0.0229356738427007 0.18483622721872 40122.58984375;0.16190055337602 0.0229356738427007 0.18483622721872 40122.58984375]</ll>
- <rmsdtc>[0.0118127893656492 0.0452526025474072 0.068987138569355 0.0976823642849922 0.122182354331017 0.130348101258278]</rmsdtc>
- <rmsgdt>[0.00336681888438761 0.0135060073807836 0.0300287157297134 0.0521489791572094 0.0712538957595825 0.0773202627897263]</rmsgdt>
- <rmsdt>0.130348101258278</rmsdt>
- <dt>0.0789667814970016</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_2771322/ds/sub-14/sub-14_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 102s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 16s</item>
- <item>Initial correction 11s</item>
- <item>Refine background 5s</item>
- <item>Final correction 8s</item>
- <item>Final scaling 9s</item>
- <item>66s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 80s</item>
- <item>SPM preprocessing 1 (estimate 2): 77s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 20s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 48s</item>
- <item>Update probability maps 11s</item>
- <item>101s</item>
- <item>Global intensity correction: 18s</item>
- <item>SANLM denoising after intensity normalization (medium): 13s</item>
- <item>Fast Optimized Shooting registration 43s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 17s</item>
- <item>Estimate local tissue thresholds (WM) 27s</item>
- <item>Estimate local tissue thresholds (GM) 38s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 46s</item>
- <item>138s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 18s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.00) 28s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>81s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 35s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>13s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0835 0.0000 0.0835 | 32.0000</item>
- <item>2 | 2.50 | 0.0810 0.0011 0.0821 | 29.4886</item>
- <item>3 | 2.50 | 0.0802 0.0017 0.0819 | 26.9772</item>
- <item>4 | 2.50 | 0.0798 0.0020 0.0818 | 24.6107</item>
- <item>5 | 2.50 | 0.0795 0.0022 0.0816 | 22.6548</item>
- <item>6 | 2.50 | 0.0792 0.0023 0.0814 | 20.6989</item>
- <item>7 | 2.50 | 0.0789 0.0024 0.0813 | 18.9688</item>
- <item>8 | 2.50 | 0.0786 0.0025 0.0811 | 17.4455</item>
- <item>9 | 2.50 | 0.0783 0.0026 0.0809 | 15.9223</item>
- <item>10 | 2.50 | 0.0780 0.0027 0.0806 | 14.6627</item>
- <item>11 | 2.50 | 0.0776 0.0028 0.0804 | 13.4764</item>
- <item>12 | 2.50 | 0.0773 0.0029 0.0802 | 12.3015</item>
- <item>13 | 2.50 | 0.0770 0.0030 0.0799 | 11.3776</item>
- <item>14 | 2.50 | 0.0766 0.0031 0.0797 | 10.4537</item>
- <item>15 | 2.25 | 0.0771 0.0032 0.0803 | 9.5920</item>
- <item>16 | 2.25 | 0.0741 0.0047 0.0788 | 8.8725</item>
- <item>29 | 2.00 | 0.0757 0.0021 0.0779 | 3.3283</item>
- <item>30 | 2.00 | 0.0692 0.0047 0.0740 | 3.1221</item>
- <item>31 | 2.00 | 0.0669 0.0058 0.0727 | 2.9160</item>
- <item>43 | 1.75 | 0.0658 0.0034 0.0692 | 1.5785</item>
- <item>44 | 1.75 | 0.0613 0.0058 0.0671 | 1.5194</item>
- <item>45 | 1.75 | 0.0597 0.0066 0.0663 | 1.4626</item>
- <item>57 | 1.50 | 0.0584 0.0049 0.0632 | 1.0900</item>
- <item>58 | 1.50 | 0.0551 0.0069 0.0621 | 1.0730</item>
- <item>59 | 1.50 | 0.0540 0.0076 0.0616 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 203s</item>
- <item>Prepare output 13s</item>
- <item>216s</item>
- <item>Jacobian determinant (RMS): 0.012 0.045 0.069 0.098 0.122 | 0.130348</item>
- <item>Template Matching: 0.084 0.222 0.201 0.179 0.162 | 0.161901</item>
- <item>Write result maps: 28s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 61s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 58s</item>
- <item>146s</item>
- <item>Create initial surface 103s</item>
- <item>Topology correction: 109s</item>
- <item>Surface refinement: 94s</item>
- <item>Reduction of surface collisions with optimization: 74s</item>
- <item>Spherical mapping with areal smoothing 97s</item>
- <item>Spherical registration 329s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 41s</item>
- <item>CSF distance: 18s</item>
- <item>PBT2x thickness: 53s</item>
- <item>119s</item>
- <item>Create initial surface 96s</item>
- <item>Topology correction: 105s</item>
- <item>Surface refinement: 81s</item>
- <item>Reduction of surface collisions with optimization: 72s</item>
- <item>Spherical mapping with areal smoothing 91s</item>
- <item>Spherical registration 328s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5346 0.6511 mm</item>
- <item>Surface intensity / position RMSE: 0.0705 / 0.0838</item>
- <item>Euler number / defect number / defect size: 34.0 / 16.5 / 1.49%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2771322/ds/sub-14/surf/lh.thickness.sub-14_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2771322/ds/sub-14/surf/rh.thickness.sub-14_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2771322/ds/sub-14/sub-14_T1w.nii</item>
- <item>Surface ROI estimation: 10s</item>
- <item>Surface and thickness estimation takes: 1954s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 9s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 33s</item>
- <item>ROI estimation of 'lpba40' atlas 10s</item>
- <item>ROI estimation of 'hammers' atlas 23s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 20s</item>
- <item>ROI estimation of 'anatomy3' atlas 28s</item>
- <item>ROI estimation of 'julichbrain' atlas 37s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 25s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 77s</item>
- <item>Write results 77s</item>
- <item>353s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2771322/ds/sub-14/report/catreport_sub-14_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 57 minute(s) and 14 second(s).</item>
- <item>Image Quality Rating (IQR): 81.97% (B-)</item>
- <item>GM volume (GMV): 48.80% (707.83 / 1450.57 ml)</item>
- <item>GM thickness (GMT): 2.53 0.65 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2771322/ds/sub-14/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2771322/ds/sub-14/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2771322/ds/sub-14/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|