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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <tr>
- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <shootingtpm>
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- <res_BB>0</res_BB>
- <tissue_mn>[1.31200003623962 60.7584228515625 140.36653137207 204.413589477539]</tissue_mn>
- <tissue_mnr>[0.00641836039721966 0.297232806682587 0.686679065227509 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[1.92060581282999 22.2028628165908 18.8227145813814 11.3955478642506]</tissue_std>
- <tissue_stdr>[0.0094563802704215 0.109319008886814 0.0926763564348221 0.0561076290905476]</tissue_stdr>
- <contrast>64.4607849121094</contrast>
- <contrastr>0.315344929695129</contrastr>
- <NCR>0.11818715929985</NCR>
- <ICR>0.193425610661507</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999997848842 1.99999975343231 1.99999901727551]</res_vx_vol>
- <res_RMS>1.99999958306546</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[6.0284743309021 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.35315942764282</contrastr>
- <NCR>2.02766513824463</NCR>
- <ICR>0.939547657966614</ICR>
- <SurfaceEulerNumber>2.3265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.13422436176175</SurfaceDefectArea>
- <SurfaceDefectNumber>1.7</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.37942457199097</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.35258793830872</SurfacePositionRMSE>
- <IQR>2.01416476281425</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220712-142932</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>0.536897447046993</SurfaceDefectArea>
- <SurfaceDefectNumber>14</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0689712315797806</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0676293969154358</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>28</EC_abs>
- <defect_size>0.536897447046993</defect_size>
- <vol_abs_CGW>[232.706750765789 702.213861264388 484.120759334763 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.363497790791393</vol_abs_WMH>
- <vol_rel_WMH>0.000256157289087177</vol_rel_WMH>
- <surf_TSA>1968.32177115709</surf_TSA>
- <vol_TIV>1419.04137136494</vol_TIV>
- <vol_rel_CGW>[0.163988700725444 0.494850872874091 0.341160426400465 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.56264241162104 0.608247085125794]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.56518197059631 0.738145415603186 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.96577605074298 0.238135146143917 0.285296369374024;2.57171252492027 0.172821090343004 0.420531429531747;3.19154862256156 0.26010032654061 0.294172201094229]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.91629143694787 0.326664199811742 0.530001875117195;4.15989205315516 0.384412961739642 0.469998124882805]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00863342939602</vol_TIV>
- <vol_rel_CGW>[0.795055688316163 6.73726423983641 3.9770191523072 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02561572890872</vol_rel_WMH>
- <surf_TSA>8.61991560364203</surf_TSA>
- <SQR>5.51959043263972</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.440102815628052 842 223 7045.13259395858 0.395035122773743]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00480184983462095 0 0.112742900848389]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[827.062489664924 434.166805239362 405.215060319891 720.176523498019 2253.68276565416 8534.33574779461]</SPMvols0>
- <SPMvols1>[734.324819711041 410.826962366917 231.861684676663 581.588120173894 1250.50573752718 9373.98871512937]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[71.024299621582 146.672500610352 200.340896606445]</T3th>
- <Tth>
- <T3th>[0 4.98963928222656 1.98315036296844 71.024299621582 146.672500610352 200.340896606445 264.999206542969 517.926696777344]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0203422885388136 0.0678033605217934 0.0738370046019554 0 0]</dtc>
- <ll>[0.0817254697289072 0 0.0817254697289072 0;0.194433938126032 0.00885442067451981 0.203288358800551 1888.1875;0.194433938126032 0.00885442067451981 0.203288358800551 1888.1875]</ll>
- <rmsdtc>[0.0435343123972416 0.0874146148562431 0.0960435271263123]</rmsdtc>
- <rmsgdt>[0.0311993882060051 0.0393982492387295 0.0487184375524521]</rmsgdt>
- <rmsdt>0.0960435271263123</rmsdt>
- <dt>0.0738370046019554</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00942627247422934 0.0337261594831944 0.0461807437241077 0.0542294904589653 0.0605869591236115 0.0669473111629486]</dtc>
- <ll>[0.0825808375645435 0 0.0825808375645435 0;0.215200228937729 0.0126313291742979 0.227831558112027 6465.66162109375;0.196814337714252 0.0149383660256637 0.211752703739916 10751.3212890625;0.178349407083741 0.0170671946642406 0.195416601747982 18403.078125;0.162375175279089 0.0199404414625007 0.18231561674159 34882.87109375;0.162375175279089 0.0199404414625007 0.18231561674159 34882.87109375]</ll>
- <rmsdtc>[0.011089876294136 0.0390614457428455 0.0560778416693211 0.0775932818651199 0.0988052561879158 0.104955621063709]</rmsdtc>
- <rmsgdt>[0.00305810989812016 0.0115723218768835 0.0253161508589983 0.0442520901560783 0.061711497604847 0.0672048255801201]</rmsgdt>
- <rmsdt>0.104955621063709</rmsdt>
- <dt>0.0669473111629486</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_30772/ds/sub-18/sub-18_acq-highres_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 36s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 5s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 5s</item>
- <item>36s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 64s</item>
- <item>SPM preprocessing 1 (estimate 2): 50s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 16s</item>
- <item>Update Segmentation 18s</item>
- <item>Update Skull-Stripping 43s</item>
- <item>Update probability maps 9s</item>
- <item>86s</item>
- <item>Global intensity correction: 17s</item>
- <item>SANLM denoising after intensity normalization (medium): 23s</item>
- <item>Fast Optimized Shooting registration 32s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 4s</item>
- <item>Prepare segments (LASmod = 1.04) 14s</item>
- <item>Estimate local tissue thresholds (WM) 19s</item>
- <item>Estimate local tissue thresholds (GM) 25s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 40s</item>
- <item>109s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 14s</item>
- <item>Blood vessel detection 9s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 27s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>70s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 33s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0826 0.0000 0.0826 | 32.0000</item>
- <item>2 | 2.50 | 0.0801 0.0011 0.0812 | 29.4886</item>
- <item>3 | 2.50 | 0.0793 0.0017 0.0810 | 26.9772</item>
- <item>4 | 2.50 | 0.0789 0.0019 0.0809 | 24.6107</item>
- <item>5 | 2.50 | 0.0786 0.0021 0.0807 | 22.6548</item>
- <item>6 | 2.50 | 0.0784 0.0022 0.0805 | 20.6989</item>
- <item>7 | 2.50 | 0.0781 0.0023 0.0804 | 18.9688</item>
- <item>8 | 2.50 | 0.0778 0.0024 0.0802 | 17.4455</item>
- <item>9 | 2.50 | 0.0775 0.0024 0.0800 | 15.9223</item>
- <item>10 | 2.50 | 0.0772 0.0025 0.0798 | 14.6627</item>
- <item>11 | 2.50 | 0.0769 0.0026 0.0796 | 13.4764</item>
- <item>12 | 2.50 | 0.0766 0.0027 0.0793 | 12.3015</item>
- <item>13 | 2.50 | 0.0763 0.0028 0.0791 | 11.3776</item>
- <item>14 | 2.50 | 0.0760 0.0028 0.0789 | 10.4537</item>
- <item>15 | 2.25 | 0.0744 0.0029 0.0773 | 9.5920</item>
- <item>16 | 2.25 | 0.0717 0.0042 0.0759 | 8.8725</item>
- <item>29 | 2.00 | 0.0730 0.0019 0.0749 | 3.3283</item>
- <item>30 | 2.00 | 0.0675 0.0041 0.0716 | 3.1221</item>
- <item>31 | 2.00 | 0.0656 0.0050 0.0706 | 2.9160</item>
- <item>43 | 1.75 | 0.0648 0.0029 0.0676 | 1.5785</item>
- <item>44 | 1.75 | 0.0608 0.0050 0.0657 | 1.5194</item>
- <item>45 | 1.75 | 0.0594 0.0057 0.0651 | 1.4626</item>
- <item>57 | 1.50 | 0.0581 0.0041 0.0622 | 1.0900</item>
- <item>58 | 1.50 | 0.0551 0.0060 0.0611 | 1.0730</item>
- <item>59 | 1.50 | 0.0541 0.0066 0.0608 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 161s</item>
- <item>Prepare output 10s</item>
- <item>171s</item>
- <item>Jacobian determinant (RMS): 0.011 0.039 0.056 0.078 0.099 | 0.104956</item>
- <item>Template Matching: 0.083 0.215 0.197 0.178 0.162 | 0.162375</item>
- <item>Write result maps: 25s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 43s</item>
- <item>92s</item>
- <item>Create initial surface 84s</item>
- <item>Topology correction: 92s</item>
- <item>Surface refinement: 83s</item>
- <item>Reduction of surface collisions with optimization: 71s</item>
- <item>Spherical mapping with areal smoothing 79s</item>
- <item>Spherical registration 283s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 27s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 42s</item>
- <item>89s</item>
- <item>Create initial surface 79s</item>
- <item>Topology correction: 90s</item>
- <item>Surface refinement: 80s</item>
- <item>Reduction of surface collisions with optimization: 69s</item>
- <item>Spherical mapping with areal smoothing 78s</item>
- <item>Spherical registration 290s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5627 0.6082 mm</item>
- <item>Surface intensity / position RMSE: 0.0690 / 0.0676</item>
- <item>Euler number / defect number / defect size: 28.0 / 14.0 / 0.54%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_30772/ds/sub-18/surf/lh.thickness.sub-18_acq-highres_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_30772/ds/sub-18/surf/rh.thickness.sub-18_acq-highres_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_30772/ds/sub-18/sub-18_acq-highres_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1652s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 9s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 33s</item>
- <item>ROI estimation of 'lpba40' atlas 10s</item>
- <item>ROI estimation of 'hammers' atlas 23s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 19s</item>
- <item>ROI estimation of 'anatomy3' atlas 28s</item>
- <item>ROI estimation of 'julichbrain' atlas 38s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 33s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 79s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 117s</item>
- <item>Write results 117s</item>
- <item>429s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_30772/ds/sub-18/report/catreport_sub-18_acq-highres_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 50 minute(s) and 17 second(s).</item>
- <item>Image Quality Rating (IQR): 84.86% (B)</item>
- <item>GM volume (GMV): 49.49% (702.21 / 1419.04 ml)</item>
- <item>GM thickness (GMT): 2.56 0.61 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_30772/ds/sub-18/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_30772/ds/sub-18/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_30772/ds/sub-18/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|