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- <Fm>/var/lib/condor/execute/dir_2912350/ds/sub-22/mri/msub-22_T1w.nii</Fm>
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- <fnames>..12350/ds/sub-22/sub-22_T1w</fnames>
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- <parameter>
- <opts>
- <tpm>
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- </tpm>
- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
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- <WMHC>2</WMHC>
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- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
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- <nproc>64</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <reduce_mesh>1</reduce_mesh>
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- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
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- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
- <LAB>
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- <VT>15</VT>
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- <HD>21</HD>
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- <PH>25</PH>
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- <regstr>0.5</regstr>
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- <restypes>
- <optimal>[1 0.3]</optimal>
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- <LASmyostr>0</LASmyostr>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>16</SurfaceEulerNumber>
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- <res_BB>0</res_BB>
- <tissue_mn>[24.8430004119873 273.672424316406 721.868408203125 976.43408203125]</tissue_mn>
- <tissue_mnr>[0.0254425778985023 0.2802774310112 0.739290475845337 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[24.7305130065823 113.497597185893 86.0838676381922 42.6535063461574]</tissue_std>
- <tissue_stdr>[0.0259885936975479 0.119271397590637 0.0904630869626999 0.0448233559727669]</tissue_stdr>
- <contrast>261.211578369141</contrast>
- <contrastr>0.26751583814621</contrastr>
- <NCR>0.118598580360413</NCR>
- <ICR>0.113667160272598</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.60000003639603 1.59999998601672 1.59999994283033]</res_vx_vol>
- <res_RMS>1.59999998841436</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>4.07059574127197</contrastr>
- <NCR>2.03357124328613</NCR>
- <ICR>0.741734027862549</ICR>
- <SurfaceEulerNumber>1.71428571428571</SurfaceEulerNumber>
- <SurfaceDefectArea>1.09190302901086</SurfaceDefectArea>
- <SurfaceDefectNumber>1.85</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.45991933345795</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.40829873085022</SurfacePositionRMSE>
- <IQR>1.89700791039224</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-220548</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>16</SurfaceEulerNumber>
- <SurfaceDefectArea>0.367612116043445</SurfaceDefectArea>
- <SurfaceDefectNumber>17</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0729959681630135</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0704149380326271</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>16</EC_abs>
- <defect_size>0.367612116043445</defect_size>
- <vol_abs_CGW>[210.43199142337 677.286313038012 487.60271959631 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.615859688612522</vol_abs_WMH>
- <vol_rel_WMH>0.000447793408113194</vol_rel_WMH>
- <surf_TSA>1985.29057156883</surf_TSA>
- <vol_TIV>1375.32102405769</vol_TIV>
- <vol_rel_CGW>[0.153005725748684 0.492456889112168 0.354537385139148 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.48832833236408 0.618876580170765]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.48505187034607 0.742439899885833 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.88701423269573 0.246273141442701 0.29464268971854;2.50720555996727 0.176100358730216 0.43499784357479;3.16437881998713 0.266737011661262 0.27035946670667]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.832299089588545 0.364564827233761 0.53180850078711;4.0813914120103 0.30968769530982 0.46819149921289]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.01449686019177</vol_TIV>
- <vol_rel_CGW>[0.597803982555381 6.69426884181336 4.21726625609103 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04477934081132</vol_rel_WMH>
- <surf_TSA>8.62081587814169</surf_TSA>
- <SQR>5.49113735485758</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.0897300180288462 16 13293 9306.25054983961 0.316378670997586]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0295843202620745 0.0302425529807806 0.161003619432449]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[787.614313407526 451.669678931993 308.260891452027 586.425546128915 1774.26831128534 6892.27961845853]</SPMvols0>
- <SPMvols1>[706.469453048629 425.603602885189 192.900342799433 804.033080863427 1463.4203682188 6631.21744799136]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[319.303405761719 719.850891113281 961.572326660156]</T3th>
- <Tth>
- <T3th>[0 0 40.8396415710449 319.303405761719 719.850891113281 961.572326660156 1282.70678710938 2261.15283203125]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0237535797059536 0.0869225412607193 0.096162274479866 0 0]</dtc>
- <ll>[0.0844332850327631 0 0.0844332850327631 0;0.185887624092606 0.0116323148216806 0.197519938914286 2480.56787109375;0.185887624092606 0.0116323148216806 0.197519938914286 2480.56787109375]</ll>
- <rmsdtc>[0.0507360696792603 0.111077092587948 0.121009834110737]</rmsdtc>
- <rmsgdt>[0.0359342694282532 0.0453780591487885 0.0543896481394768]</rmsgdt>
- <rmsdt>0.121009834110737</rmsdt>
- <dt>0.096162274479866</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0119128962978721 0.0456163547933102 0.0643369257450104 0.0728060901165009 0.078790158033371 0.0888119414448738]</dtc>
- <ll>[0.0849289158389885 0 0.0849289158389885 0;0.21408869047619 0.0177780925671551 0.231866783043346 9100.1611328125;0.188318751979959 0.0194409740892885 0.207759726069247 13991.90234375;0.168112266663699 0.0201236837157044 0.188235950379403 21698.8046875;0.151499011348767 0.0224874746549153 0.173986486003682 39338.53125;0.151499011348767 0.0224874746549153 0.173986486003682 39338.53125]</ll>
- <rmsdtc>[0.0138609847053885 0.0518197268247604 0.0761967301368713 0.101358443498611 0.121811047196388 0.128122419118881]</rmsdtc>
- <rmsgdt>[0.00384993921034038 0.0148401884362102 0.0296720564365387 0.0482149831950665 0.0645074620842934 0.0696973353624344]</rmsgdt>
- <rmsdt>0.128122419118881</rmsdt>
- <dt>0.0888119414448738</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_2912350/ds/sub-22/sub-22_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 253s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 14s</item>
- <item>Estimate background 13s</item>
- <item>Initial correction 15s</item>
- <item>Refine background 6s</item>
- <item>Final correction 13s</item>
- <item>Final scaling 14s</item>
- <item>90s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 17s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 164s</item>
- <item>SPM preprocessing 1 (estimate 2): 88s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 37s</item>
- <item>Update Segmentation 40s</item>
- <item>Update Skull-Stripping 89s</item>
- <item>Update probability maps 17s</item>
- <item>183s</item>
- <item>Global intensity correction: 34s</item>
- <item>SANLM denoising after intensity normalization (medium): 51s</item>
- <item>Fast Optimized Shooting registration 55s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 9s</item>
- <item>Prepare partitions 4s</item>
- <item>Prepare segments (LASmod = 1.00) 32s</item>
- <item>Estimate local tissue thresholds (WM) 42s</item>
- <item>Estimate local tissue thresholds (GM) 64s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 75s</item>
- <item>235s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 16s</item>
- <item>Major structures 8s</item>
- <item>Ventricle detection 34s</item>
- <item>Blood vessel detection 25s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 62s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 4s</item>
- <item>Side alignment 8s</item>
- <item>Final corrections 9s</item>
- <item>165s</item>
- <item>Blood vessel correction (BVCstr=0.50): 3s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 61s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 9s</item>
- <item>Level 1 cleanup (brain masking) 5s</item>
- <item>Level 2 cleanup (CSF correction) 3s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 6s</item>
- <item>23s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0849 0.0000 0.0849 | 32.0000</item>
- <item>2 | 2.50 | 0.0812 0.0015 0.0827 | 29.4886</item>
- <item>3 | 2.50 | 0.0801 0.0023 0.0824 | 26.9772</item>
- <item>4 | 2.50 | 0.0796 0.0026 0.0822 | 24.6107</item>
- <item>5 | 2.50 | 0.0791 0.0028 0.0820 | 22.6548</item>
- <item>6 | 2.50 | 0.0788 0.0029 0.0817 | 20.6989</item>
- <item>7 | 2.50 | 0.0784 0.0031 0.0815 | 18.9688</item>
- <item>8 | 2.50 | 0.0780 0.0032 0.0812 | 17.4455</item>
- <item>9 | 2.50 | 0.0776 0.0033 0.0809 | 15.9223</item>
- <item>10 | 2.50 | 0.0771 0.0035 0.0806 | 14.6627</item>
- <item>11 | 2.50 | 0.0767 0.0036 0.0803 | 13.4764</item>
- <item>12 | 2.50 | 0.0762 0.0037 0.0799 | 12.3015</item>
- <item>13 | 2.50 | 0.0758 0.0039 0.0796 | 11.3776</item>
- <item>14 | 2.50 | 0.0753 0.0039 0.0793 | 10.4537</item>
- <item>15 | 2.25 | 0.0752 0.0041 0.0792 | 9.5920</item>
- <item>16 | 2.25 | 0.0714 0.0059 0.0773 | 8.8725</item>
- <item>29 | 2.00 | 0.0719 0.0027 0.0746 | 3.3283</item>
- <item>30 | 2.00 | 0.0651 0.0054 0.0705 | 3.1221</item>
- <item>31 | 2.00 | 0.0628 0.0065 0.0693 | 2.9160</item>
- <item>43 | 1.75 | 0.0616 0.0038 0.0654 | 1.5785</item>
- <item>44 | 1.75 | 0.0575 0.0059 0.0634 | 1.5194</item>
- <item>45 | 1.75 | 0.0560 0.0067 0.0627 | 1.4626</item>
- <item>57 | 1.50 | 0.0545 0.0050 0.0594 | 1.0900</item>
- <item>58 | 1.50 | 0.0515 0.0069 0.0584 | 1.0730</item>
- <item>59 | 1.50 | 0.0505 0.0075 0.0580 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 198s</item>
- <item>Prepare output 22s</item>
- <item>220s</item>
- <item>Jacobian determinant (RMS): 0.014 0.052 0.076 0.101 0.122 | 0.128122</item>
- <item>Template Matching: 0.085 0.214 0.188 0.168 0.151 | 0.151499</item>
- <item>Write result maps: 49s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 49s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 56s</item>
- <item>131s</item>
- <item>Create initial surface 87s</item>
- <item>Topology correction: 115s</item>
- <item>Surface refinement: 76s</item>
- <item>Reduction of surface collisions with optimization: 78s</item>
- <item>Spherical mapping with areal smoothing 100s</item>
- <item>Spherical registration 329s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 38s</item>
- <item>CSF distance: 18s</item>
- <item>PBT2x thickness: 55s</item>
- <item>118s</item>
- <item>Create initial surface 86s</item>
- <item>Topology correction: 116s</item>
- <item>Surface refinement: 118s</item>
- <item>Reduction of surface collisions with optimization: 83s</item>
- <item>Spherical mapping with areal smoothing 108s</item>
- <item>Spherical registration 368s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4885 0.6185 mm</item>
- <item>Surface intensity / position RMSE: 0.0730 / 0.0704</item>
- <item>Euler number / defect number / defect size: 16.0 / 17.0 / 0.37%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2912350/ds/sub-22/surf/lh.thickness.sub-22_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2912350/ds/sub-22/surf/rh.thickness.sub-22_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2912350/ds/sub-22/sub-22_T1w.nii</item>
- <item>Surface ROI estimation: 10s</item>
- <item>Surface and thickness estimation takes: 2053s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 17s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 61s</item>
- <item>ROI estimation of 'lpba40' atlas 17s</item>
- <item>ROI estimation of 'hammers' atlas 43s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 15s</item>
- <item>ROI estimation of 'aal3' atlas 24s</item>
- <item>ROI estimation of 'mori' atlas 36s</item>
- <item>ROI estimation of 'anatomy3' atlas 52s</item>
- <item>ROI estimation of 'julichbrain' atlas 71s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 28s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 48s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 113s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 169s</item>
- <item>Write results 170s</item>
- <item>699s</item>
- <item>Quality check: 10s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2912350/ds/sub-22/report/catreport_sub-22_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 77 minute(s) and 3 second(s).</item>
- <item>Image Quality Rating (IQR): 86.03% (B)</item>
- <item>GM volume (GMV): 49.25% (677.29 / 1375.32 ml)</item>
- <item>GM thickness (GMT): 2.49 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2912350/ds/sub-22/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2912350/ds/sub-22/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2912350/ds/sub-22/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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