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- <Fm>/var/lib/condor/execute/dir_19614/ds/sub-24/mri/msub-24_T1w.nii</Fm>
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- <fnames>..19614/ds/sub-24/sub-24_T1w</fnames>
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- <parameter>
- <opts>
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- </tpm>
- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
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- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
- <bids_yes>0</bids_yes>
- <nproc>32</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
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- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <td>
- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
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- <LAB>
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- <PH>25</PH>
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- <new_release>0</new_release>
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- <shooting>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- <LASmyostr>0</LASmyostr>
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- <templates>
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- </templates>
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- <SurfaceEulerNumber>18</SurfaceEulerNumber>
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- <tissue_mn>[26.0830001831055 282.326721191406 711.256652832031 974.842834472656]</tissue_mn>
- <tissue_mnr>[0.0267561078071594 0.28961256146431 0.72961163520813 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[26.6725794643898 113.039732926087 82.4630288110148 47.902583844432]</tissue_std>
- <tissue_stdr>[0.0281130988150835 0.119144730269909 0.0869166553020477 0.0504896827042103]</tissue_stdr>
- <contrast>270.832611083984</contrast>
- <contrastr>0.277821809053421</contrastr>
- <NCR>0.14312544465065</NCR>
- <ICR>0.129459708929062</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.60000013349922 1.60000006453684 1.59999993033881]</res_vx_vol>
- <res_RMS>1.60000004279162</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.91600608825684</contrastr>
- <NCR>2.38566517829895</NCR>
- <ICR>0.780902028083801</ICR>
- <SurfaceEulerNumber>1.81632653061224</SurfaceEulerNumber>
- <SurfaceDefectArea>1.14769826169332</SurfaceDefectArea>
- <SurfaceDefectNumber>1.825</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.55313992500305</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.50512909889221</SurfacePositionRMSE>
- <IQR>2.19866286108742</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220709-214845</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>18</SurfaceEulerNumber>
- <SurfaceDefectArea>0.590793046773279</SurfaceDefectArea>
- <SurfaceDefectNumber>16.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0776569992303848</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0752564519643784</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>18</EC_abs>
- <defect_size>0.590793046773279</defect_size>
- <vol_abs_CGW>[213.176855183267 836.8117028104 570.927774396225 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.43853940991333</vol_abs_WMH>
- <vol_rel_WMH>0.00088748529530351</vol_rel_WMH>
- <surf_TSA>2249.01264147356</surf_TSA>
- <vol_TIV>1620.91633238989</vol_TIV>
- <vol_rel_CGW>[0.131516260847935 0.516258418826959 0.352225320325106 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.64036310611045 0.625744902150646]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.66493630409241 0.737970753247904 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.97289592817074 0.251730813789808 0.271711649415476;2.6473780276874 0.184283739733226 0.418101864857273;3.29096157148548 0.260475024947334 0.310186485727251]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.921238094105419 0.389459236909107 0.541419307699333;4.17645401100884 0.330600184543641 0.458580692300667]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>2.07842934274938</vol_TIV>
- <vol_rel_CGW>[0.5 7.12173884387499 4.17574210353997 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.08874852953035</vol_rel_WMH>
- <surf_TSA>8.6239605263522</surf_TSA>
- <SQR>5.83401988658116</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.100268729967949 43 15 9198.50774603568 0.289980892674822]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0310113895684481 0.0316310040652752 0.150040045380592]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[997.42205186427 521.191921733899 328.086558425116 430.630378444119 1786.10500990641 6787.76720388932]</SPMvols0>
- <SPMvols1>[878.030310300853 488.465700307434 193.84148685039 351.472212511473 1246.20612861179 7065.67477261252]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[340.077087402344 711.057189941406 963.472595214844]</T3th>
- <Tth>
- <T3th>[0 3.26776123046875 37.6312103271484 340.077087402344 711.057189941406 963.472595214844 1275.17041015625 2528.29296875]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0196457616984844 0.068580336868763 0.0750935673713684 0 0]</dtc>
- <ll>[0.0824458995023791 0 0.0824458995023791 0;0.193273207720588 0.0098654219225532 0.203138629643141 2103.78149414062;0.193273207720588 0.0098654219225532 0.203138629643141 2103.78149414062]</ll>
- <rmsdtc>[0.0422094538807869 0.0905524343252182 0.0998920127749443]</rmsdtc>
- <rmsgdt>[0.0300831329077482 0.0400526486337185 0.0491651520133018]</rmsgdt>
- <rmsdt>0.0998920127749443</rmsdt>
- <dt>0.0750935673713684</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00931991543620825 0.0345679223537445 0.0487002730369568 0.0579081363976002 0.0651651620864868 0.0730286613106728]</dtc>
- <ll>[0.0843256174872815 0 0.0843256174872815 0;0.220554609279609 0.0145021997100122 0.235056808989622 7423.3134765625;0.200538765853564 0.0173246788949955 0.217863444748559 12468.779296875;0.180229368146442 0.0197074433677217 0.199936811514163 21249.984375;0.163313397153119 0.0229598144642619 0.186273211617381 40164.8203125;0.163313397153119 0.0229598144642619 0.186273211617381 40164.8203125]</ll>
- <rmsdtc>[0.0111068738624454 0.0412272661924362 0.0618007108569145 0.0878153741359711 0.11231604218483 0.119484134018421]</rmsdtc>
- <rmsgdt>[0.0032577277161181 0.0127318035811186 0.0284665003418922 0.0499765872955322 0.0696915909647942 0.0760977938771248]</rmsgdt>
- <rmsdt>0.119484134018421</rmsdt>
- <dt>0.0730286613106728</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_19614/ds/sub-24/sub-24_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 110s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 11s</item>
- <item>Estimate background 10s</item>
- <item>Initial correction 11s</item>
- <item>Refine background 5s</item>
- <item>Final correction 10s</item>
- <item>Final scaling 12s</item>
- <item>69s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 13s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 136s</item>
- <item>SPM preprocessing 1 (estimate 2): 70s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 29s</item>
- <item>Update Segmentation 34s</item>
- <item>Update Skull-Stripping 86s</item>
- <item>Update probability maps 15s</item>
- <item>164s</item>
- <item>Global intensity correction: 27s</item>
- <item>SANLM denoising after intensity normalization (medium): 32s</item>
- <item>Fast Optimized Shooting registration 41s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 8s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.00) 27s</item>
- <item>Estimate local tissue thresholds (WM) 33s</item>
- <item>Estimate local tissue thresholds (GM) 50s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 60s</item>
- <item>188s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 13s</item>
- <item>Major structures 8s</item>
- <item>Ventricle detection 37s</item>
- <item>Blood vessel detection 20s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 61s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 4s</item>
- <item>Side alignment 8s</item>
- <item>Final corrections 7s</item>
- <item>158s</item>
- <item>Blood vessel correction (BVCstr=0.50): 3s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 58s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 8s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 3s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 5s</item>
- <item>20s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0843 0.0000 0.0843 | 32.0000</item>
- <item>2 | 2.50 | 0.0815 0.0012 0.0827 | 29.4886</item>
- <item>3 | 2.50 | 0.0806 0.0019 0.0825 | 26.9772</item>
- <item>4 | 2.50 | 0.0802 0.0021 0.0823 | 24.6107</item>
- <item>5 | 2.50 | 0.0798 0.0023 0.0821 | 22.6548</item>
- <item>6 | 2.50 | 0.0795 0.0024 0.0819 | 20.6989</item>
- <item>7 | 2.50 | 0.0792 0.0025 0.0817 | 18.9688</item>
- <item>8 | 2.50 | 0.0789 0.0026 0.0815 | 17.4455</item>
- <item>9 | 2.50 | 0.0785 0.0027 0.0813 | 15.9223</item>
- <item>10 | 2.50 | 0.0782 0.0028 0.0810 | 14.6627</item>
- <item>11 | 2.50 | 0.0778 0.0029 0.0808 | 13.4764</item>
- <item>12 | 2.50 | 0.0775 0.0030 0.0805 | 12.3015</item>
- <item>13 | 2.50 | 0.0771 0.0031 0.0802 | 11.3776</item>
- <item>14 | 2.50 | 0.0767 0.0032 0.0799 | 10.4537</item>
- <item>15 | 2.25 | 0.0767 0.0033 0.0799 | 9.5920</item>
- <item>16 | 2.25 | 0.0735 0.0048 0.0784 | 8.8725</item>
- <item>29 | 2.00 | 0.0754 0.0022 0.0776 | 3.3283</item>
- <item>30 | 2.00 | 0.0691 0.0048 0.0738 | 3.1221</item>
- <item>31 | 2.00 | 0.0668 0.0058 0.0726 | 2.9160</item>
- <item>43 | 1.75 | 0.0662 0.0033 0.0695 | 1.5785</item>
- <item>44 | 1.75 | 0.0616 0.0058 0.0674 | 1.5194</item>
- <item>45 | 1.75 | 0.0601 0.0066 0.0666 | 1.4626</item>
- <item>57 | 1.50 | 0.0589 0.0048 0.0637 | 1.0900</item>
- <item>58 | 1.50 | 0.0555 0.0070 0.0625 | 1.0730</item>
- <item>59 | 1.50 | 0.0544 0.0077 0.0621 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 156s</item>
- <item>Prepare output 16s</item>
- <item>171s</item>
- <item>Jacobian determinant (RMS): 0.011 0.041 0.062 0.088 0.112 | 0.119484</item>
- <item>Template Matching: 0.084 0.221 0.201 0.180 0.163 | 0.163313</item>
- <item>Write result maps: 40s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 35s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 50s</item>
- <item>108s</item>
- <item>Create initial surface 82s</item>
- <item>Topology correction: 105s</item>
- <item>Surface refinement: 116s</item>
- <item>Reduction of surface collisions with optimization: 87s</item>
- <item>Spherical mapping with areal smoothing 87s</item>
- <item>Spherical registration 290s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 32s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 50s</item>
- <item>105s</item>
- <item>Create initial surface 81s</item>
- <item>Topology correction: 108s</item>
- <item>Surface refinement: 103s</item>
- <item>Reduction of surface collisions with optimization: 93s</item>
- <item>Spherical mapping with areal smoothing 99s</item>
- <item>Spherical registration 317s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6407 0.6257 mm</item>
- <item>Surface intensity / position RMSE: 0.0777 / 0.0753</item>
- <item>Euler number / defect number / defect size: 18.0 / 16.5 / 0.59%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19614/ds/sub-24/surf/lh.thickness.sub-24_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19614/ds/sub-24/surf/rh.thickness.sub-24_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_19614/ds/sub-24/sub-24_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1906s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 14s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 50s</item>
- <item>ROI estimation of 'lpba40' atlas 15s</item>
- <item>ROI estimation of 'hammers' atlas 36s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 13s</item>
- <item>ROI estimation of 'aal3' atlas 21s</item>
- <item>ROI estimation of 'mori' atlas 31s</item>
- <item>ROI estimation of 'anatomy3' atlas 45s</item>
- <item>ROI estimation of 'julichbrain' atlas 58s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 94s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 136s</item>
- <item>Write results 137s</item>
- <item>580s</item>
- <item>Quality check: 9s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_19614/ds/sub-24/report/catreport_sub-24_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 65 minute(s) and 44 second(s).</item>
- <item>Image Quality Rating (IQR): 83.01% (B-)</item>
- <item>GM volume (GMV): 51.63% (836.81 / 1620.92 ml)</item>
- <item>GM thickness (GMT): 2.64 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_19614/ds/sub-24/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_19614/ds/sub-24/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_19614/ds/sub-24/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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