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- <parameter>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <subfolders>1</subfolders>
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- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <templates>
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- <tissue_mnr>[0.0154754826799035 0.295917212963104 0.672240078449249 0.999999940395355]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[8.04085517294105 48.7480030389143 36.3859250606594 23.7471024080707]</tissue_std>
- <tissue_stdr>[0.0219164378941059 0.132869273424149 0.099174752831459 0.064725935459137]</tissue_stdr>
- <contrast>124.060920715332</contrast>
- <contrastr>0.332911849021912</contrastr>
- <NCR>0.12691031396389</NCR>
- <ICR>0.298281997442245</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 1.953125 1.953125]</res_vx_vol>
- <res_RMS>1.96887400403124</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.08965563774109</contrastr>
- <NCR>2.15288996696472</NCR>
- <ICR>1.19960808753967</ICR>
- <SurfaceEulerNumber>4.77551020408163</SurfaceEulerNumber>
- <SurfaceDefectArea>1.49952121306148</SurfaceDefectArea>
- <SurfaceDefectNumber>2.975</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.55319035053253</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.81359338760376</SurfacePositionRMSE>
- <IQR>2.07498801034428</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220712-144712</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>76</SurfaceEulerNumber>
- <SurfaceDefectArea>1.99808485224594</SurfaceDefectArea>
- <SurfaceDefectNumber>39.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0776595175266266</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0906796678900719</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>76</EC_abs>
- <defect_size>1.99808485224594</defect_size>
- <vol_abs_CGW>[190.132174772375 839.478436638327 576.946853188907 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.08660155651616</vol_abs_WMH>
- <vol_rel_WMH>0.000676353993218018</vol_rel_WMH>
- <surf_TSA>2302.36587901711</surf_TSA>
- <vol_TIV>1606.55746459961</vol_TIV>
- <vol_rel_CGW>[0.118347571725211 0.522532467799117 0.359119960475672 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.54436839942743 0.634028406246726]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.57505416870117 0.748745547083341 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.88252097883139 0.2642185432562 0.265150563303598;2.56079376136298 0.187075307073342 0.427147464086778;3.21917544113393 0.265111940001543 0.307701972609624]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.826896998481743 0.338778659076958 0.628056413252107;4.05729011588496 0.295743608831677 0.371943586747893]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.95166442680898</vol_TIV>
- <vol_rel_CGW>[0.5 7.23441932110484 4.29956825566939 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.0676353993218</vol_rel_WMH>
- <surf_TSA>8.62398558180962</surf_TSA>
- <SQR>5.92749138792881</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.216935591264205 3 1 7536.99493408203 0.406894739433123]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0122536718845367 0.00979000143706799 0.125807642936707]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[998.845291137695 504.2501225191 361.484097499473 809.323101417691 1738.96494472728 5963.08061936322]</SPMvols0>
- <SPMvols1>[883.121471779019 472.692710278081 202.137535693599 780.477875354243 1263.35519154867 6024.1657892863]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[131.143402099609 272.417694091797 370.260192871094]</T3th>
- <Tth>
- <T3th>[0 24.7474060058594 9.5786190032959 131.143402099609 272.417694091797 370.260192871094 489.818603515625 1122.99768066406]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0155197717249393 0.0516916662454605 0.0560408346354961 0 0]</dtc>
- <ll>[0.0788373699089011 0 0.0788373699089011 0;0.198143197708771 0.00773249840249821 0.205875696111269 1648.93981933594;0.198143197708771 0.00773249840249821 0.205875696111269 1648.93981933594]</ll>
- <rmsdtc>[0.0347276143729687 0.0708687007427216 0.0805828422307968]</rmsdtc>
- <rmsgdt>[0.0251204408705235 0.0390307642519474 0.0486880838871002]</rmsgdt>
- <rmsdt>0.0805828422307968</rmsdt>
- <dt>0.0560408346354961</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00617842888459563 0.0210726503282785 0.0315464623272419 0.0413265638053417 0.0490861870348454 0.0546388365328312]</dtc>
- <ll>[0.0814074563703144 0 0.0814074563703144 0;0.222676556776557 0.00921286439255189 0.231889421169109 4715.8349609375;0.207393743087513 0.0137126926508451 0.221106435738358 9869.189453125;0.188151809677892 0.017669748376917 0.205821558054809 19052.794921875;0.171214318236514 0.021653992397475 0.192868310633989 37880.4765625;0.171214318236514 0.021653992397475 0.192868310633989 37880.4765625]</ll>
- <rmsdtc>[0.00760155264288187 0.0268131699413061 0.0445358864963055 0.0728211402893066 0.101890347898006 0.108814440667629]</rmsdtc>
- <rmsgdt>[0.00283124251291156 0.0111376103013754 0.0266006104648113 0.0496762283146381 0.0714540779590607 0.077655166387558]</rmsgdt>
- <rmsdt>0.108814440667629</rmsdt>
- <dt>0.0546388365328312</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_12425/ds/sub-38/sub-38_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 63s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 10s</item>
- <item>Initial correction 11s</item>
- <item>Refine background 4s</item>
- <item>Final correction 9s</item>
- <item>Final scaling 8s</item>
- <item>58s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 22s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 109s</item>
- <item>SPM preprocessing 1 (estimate 2): 106s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 21s</item>
- <item>Update Segmentation 27s</item>
- <item>Update Skull-Stripping 54s</item>
- <item>Update probability maps 10s</item>
- <item>113s</item>
- <item>Global intensity correction: 21s</item>
- <item>SANLM denoising after intensity normalization (medium): 10s</item>
- <item>Fast Optimized Shooting registration 46s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 6s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.03) 21s</item>
- <item>Estimate local tissue thresholds (WM) 23s</item>
- <item>Estimate local tissue thresholds (GM) 32s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 27s</item>
- <item>116s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 11s</item>
- <item>Major structures 6s</item>
- <item>Ventricle detection 21s</item>
- <item>Blood vessel detection 13s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 40s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 6s</item>
- <item>Final corrections 6s</item>
- <item>104s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 56s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>16s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0814 0.0000 0.0814 | 32.0000</item>
- <item>2 | 2.50 | 0.0798 0.0009 0.0807 | 29.4886</item>
- <item>3 | 2.50 | 0.0794 0.0013 0.0807 | 26.9772</item>
- <item>4 | 2.50 | 0.0792 0.0014 0.0806 | 24.6107</item>
- <item>5 | 2.50 | 0.0790 0.0015 0.0805 | 22.6548</item>
- <item>6 | 2.50 | 0.0788 0.0015 0.0804 | 20.6989</item>
- <item>7 | 2.50 | 0.0787 0.0016 0.0802 | 18.9688</item>
- <item>8 | 2.50 | 0.0785 0.0016 0.0801 | 17.4455</item>
- <item>9 | 2.50 | 0.0783 0.0017 0.0800 | 15.9223</item>
- <item>10 | 2.50 | 0.0781 0.0017 0.0798 | 14.6627</item>
- <item>11 | 2.50 | 0.0779 0.0018 0.0797 | 13.4764</item>
- <item>12 | 2.50 | 0.0777 0.0018 0.0795 | 12.3015</item>
- <item>13 | 2.50 | 0.0775 0.0019 0.0794 | 11.3776</item>
- <item>14 | 2.50 | 0.0773 0.0019 0.0792 | 10.4537</item>
- <item>15 | 2.25 | 0.0766 0.0019 0.0785 | 9.5920</item>
- <item>16 | 2.25 | 0.0742 0.0031 0.0773 | 8.8725</item>
- <item>29 | 2.00 | 0.0766 0.0014 0.0780 | 3.3283</item>
- <item>30 | 2.00 | 0.0709 0.0037 0.0746 | 3.1221</item>
- <item>31 | 2.00 | 0.0691 0.0046 0.0737 | 2.9160</item>
- <item>43 | 1.75 | 0.0687 0.0026 0.0713 | 1.5785</item>
- <item>44 | 1.75 | 0.0642 0.0050 0.0692 | 1.5194</item>
- <item>45 | 1.75 | 0.0627 0.0059 0.0686 | 1.4626</item>
- <item>57 | 1.50 | 0.0617 0.0042 0.0659 | 1.0900</item>
- <item>58 | 1.50 | 0.0582 0.0065 0.0647 | 1.0730</item>
- <item>59 | 1.50 | 0.0571 0.0072 0.0643 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 256s</item>
- <item>Prepare output 12s</item>
- <item>268s</item>
- <item>Jacobian determinant (RMS): 0.008 0.027 0.045 0.073 0.102 | 0.108814</item>
- <item>Template Matching: 0.081 0.223 0.207 0.188 0.171 | 0.171214</item>
- <item>Write result maps: 31s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 46s</item>
- <item>CSF distance: 23s</item>
- <item>PBT2x thickness: 72s</item>
- <item>151s</item>
- <item>Create initial surface 127s</item>
- <item>Topology correction: 154s</item>
- <item>Surface refinement: 150s</item>
- <item>Reduction of surface collisions with optimization: 135s</item>
- <item>Spherical mapping with areal smoothing 134s</item>
- <item>Spherical registration 290s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 46s</item>
- <item>CSF distance: 23s</item>
- <item>PBT2x thickness: 71s</item>
- <item>149s</item>
- <item>Create initial surface 124s</item>
- <item>Topology correction: 159s</item>
- <item>Surface refinement: 156s</item>
- <item>Reduction of surface collisions with optimization: 147s</item>
- <item>Spherical mapping with areal smoothing 141s</item>
- <item>Spherical registration 285s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5447 0.6330 mm</item>
- <item>Surface intensity / position RMSE: 0.0777 / 0.0907</item>
- <item>Euler number / defect number / defect size: 76.0 / 39.5 / 2.00%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_12425/ds/sub-38/surf/lh.thickness.sub-38_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_12425/ds/sub-38/surf/rh.thickness.sub-38_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_12425/ds/sub-38/sub-38_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 2433s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 16s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 56s</item>
- <item>ROI estimation of 'lpba40' atlas 17s</item>
- <item>ROI estimation of 'hammers' atlas 40s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 15s</item>
- <item>ROI estimation of 'aal3' atlas 25s</item>
- <item>ROI estimation of 'mori' atlas 38s</item>
- <item>ROI estimation of 'anatomy3' atlas 51s</item>
- <item>ROI estimation of 'julichbrain' atlas 67s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 108s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 146s</item>
- <item>Write results 147s</item>
- <item>642s</item>
- <item>Quality check: 7s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_12425/ds/sub-38/report/catreport_sub-38_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 73 minute(s) and 3 second(s).</item>
- <item>Image Quality Rating (IQR): 84.25% (B)</item>
- <item>GM volume (GMV): 52.25% (839.48 / 1606.56 ml)</item>
- <item>GM thickness (GMT): 2.54 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_12425/ds/sub-38/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_12425/ds/sub-38/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_12425/ds/sub-38/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|