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- <fnames>..99/ds/sub-sc007/sub-sc007_T1w</fnames>
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- <parameter>
- <opts>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <optimal>[1 0.3]</optimal>
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- <LASmyostr>0</LASmyostr>
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- </shootingtpms>
- <templates>
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- <tissue_mnr>[0 0.104399397969246 0.526257455348969 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3806.05519256507 35493.8530159156 47380.1672148437 34808.7640733283]</tissue_std>
- <tissue_stdr>[0.010052939876914 0.0937499701976776 0.125145316123962 0.0919404402375221]</tissue_stdr>
- <contrast>128188.6328125</contrast>
- <contrastr>0.338584840297699</contrastr>
- <NCR>0.129941076040268</NCR>
- <ICR>0.279727160930634</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999994174506 1.99999997516957 1.99999995664662]</res_vx_vol>
- <res_RMS>1.99999995785375</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.00456070899963</contrastr>
- <NCR>2.19639778137207</NCR>
- <ICR>1.15358924865723</ICR>
- <SurfaceEulerNumber>2.02040816326531</SurfaceEulerNumber>
- <SurfaceDefectArea>1.13114326618569</SurfaceDefectArea>
- <SurfaceDefectNumber>1.525</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.30164194107056</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.32165002822876</SurfacePositionRMSE>
- <IQR>2.11395228993335</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220711-185945</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>0.524573064742758</SurfaceDefectArea>
- <SurfaceDefectNumber>10.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0650820955634117</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0660824999213219</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>22</EC_abs>
- <defect_size>0.524573064742758</defect_size>
- <vol_abs_CGW>[204.609595499187 655.644722746961 442.6942850933 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.245584284788885</vol_abs_WMH>
- <vol_rel_WMH>0.000188483478288748</vol_rel_WMH>
- <surf_TSA>1803.40821650401</surf_TSA>
- <vol_TIV>1302.94860333945</vol_TIV>
- <vol_rel_CGW>[0.157035814747239 0.503200756397104 0.339763428855657 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.52040143231209 0.601746303432608]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.50687742233276 0.718409354263318 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.96075072046432 0.234226730570115 0.310603809826506;2.54872732126123 0.170101234902322 0.433037842618375;3.19022065001755 0.260621769268374 0.256358347555119]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.929792084466902 0.34561969247011 0.524728962312855;4.12029730665044 0.35311962037672 0.475271037687145]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.22113658105166</vol_TIV>
- <vol_rel_CGW>[0.670183454512191 6.88722622839627 3.95192939755131 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.01884834782887</vol_rel_WMH>
- <surf_TSA>8.58680452432975</surf_TSA>
- <SQR>5.64036705937955</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.722235243055556 1949 678 3519.83477747823 0.505360132699915]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.0885080918669701]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[800.922042884186 378.269739743113 359.464796860815 699.682113636573 2112.86582555591 8957.55322298445]</SPMvols0>
- <SPMvols1>[709.320206618587 357.45355396054 198.715349134869 894.756271043611 1664.17708234539 8847.61795750648]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[53969.77734375 224055.578125 385581.59375]</T3th>
- <Tth>
- <T3th>[0 0 1410.60693359375 53969.77734375 224055.578125 385581.59375 551387.5 933327.3125]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0219071079045534 0.0781863927841187 0.0868321806192398 0 0]</dtc>
- <ll>[0.0832697947343 0 0.0832697947343 0;0.191306179454204 0.0104794072933128 0.201785586747516 2234.71264648438;0.191306179454204 0.0104794072933128 0.201785586747516 2234.71264648438]</ll>
- <rmsdtc>[0.0482089929282665 0.10367040336132 0.115421034395695]</rmsdtc>
- <rmsgdt>[0.0344648472964764 0.0477670356631279 0.058630432933569]</rmsgdt>
- <rmsdt>0.115421034395695</rmsdt>
- <dt>0.0868321806192398</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0104352831840515 0.0384747497737408 0.0532810091972351 0.0609793290495872 0.0670402646064758 0.0752423033118248]</dtc>
- <ll>[0.0836926055810319 0 0.0836926055810319 0;0.21658253968254 0.0142050423534799 0.23078758203602 7271.2060546875;0.195166521469699 0.0166101325512844 0.211776654020983 11954.51171875;0.17515776979278 0.0182510060802145 0.193408775872994 19679.548828125;0.158788974409396 0.0209083059922726 0.179697280401668 36576.0078125;0.158788974409396 0.0209083059922726 0.179697280401668 36576.0078125]</ll>
- <rmsdtc>[0.0119768241420388 0.0436712354421616 0.0642141550779343 0.0876850560307503 0.109622552990913 0.116510935127735]</rmsdtc>
- <rmsgdt>[0.00333905057050288 0.0130783682689071 0.0285756886005402 0.0483060032129288 0.0655073449015617 0.0707960352301598]</rmsgdt>
- <rmsdt>0.116510935127735</rmsdt>
- <dt>0.0752423033118248</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_3099/ds/sub-sc007/sub-sc007_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 33s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 9s</item>
- <item>Estimate background 8s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 6s</item>
- <item>50s</item>
- <item>Correct center-of-mass 8s</item>
- <item>Affine registration 13s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 92s</item>
- <item>SPM preprocessing 1 (estimate 2): 72s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 22s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 55s</item>
- <item>Update probability maps 12s</item>
- <item>111s</item>
- <item>Global intensity correction: 21s</item>
- <item>SANLM denoising after intensity normalization (medium): 12s</item>
- <item>Fast Optimized Shooting registration 42s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.00) 17s</item>
- <item>Estimate local tissue thresholds (WM) 25s</item>
- <item>Estimate local tissue thresholds (GM) 33s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 13s</item>
- <item>102s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 10s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 17s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 27s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 6s</item>
- <item>79s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 35s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.99 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>14s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0837 0.0000 0.0837 | 32.0000</item>
- <item>2 | 2.50 | 0.0808 0.0013 0.0820 | 29.4886</item>
- <item>3 | 2.50 | 0.0799 0.0020 0.0818 | 26.9772</item>
- <item>4 | 2.50 | 0.0795 0.0022 0.0817 | 24.6107</item>
- <item>5 | 2.50 | 0.0791 0.0024 0.0815 | 22.6548</item>
- <item>6 | 2.50 | 0.0788 0.0024 0.0813 | 20.6989</item>
- <item>7 | 2.50 | 0.0785 0.0026 0.0811 | 18.9688</item>
- <item>8 | 2.50 | 0.0782 0.0027 0.0808 | 17.4455</item>
- <item>9 | 2.50 | 0.0779 0.0027 0.0806 | 15.9223</item>
- <item>10 | 2.50 | 0.0775 0.0028 0.0803 | 14.6627</item>
- <item>11 | 2.50 | 0.0772 0.0029 0.0801 | 13.4764</item>
- <item>12 | 2.50 | 0.0768 0.0030 0.0798 | 12.3015</item>
- <item>13 | 2.50 | 0.0765 0.0031 0.0796 | 11.3776</item>
- <item>14 | 2.50 | 0.0761 0.0032 0.0793 | 10.4537</item>
- <item>15 | 2.25 | 0.0753 0.0033 0.0785 | 9.5920</item>
- <item>16 | 2.25 | 0.0722 0.0047 0.0769 | 8.8725</item>
- <item>29 | 2.00 | 0.0731 0.0021 0.0753 | 3.3283</item>
- <item>30 | 2.00 | 0.0671 0.0046 0.0716 | 3.1221</item>
- <item>31 | 2.00 | 0.0651 0.0055 0.0706 | 2.9160</item>
- <item>43 | 1.75 | 0.0639 0.0032 0.0671 | 1.5785</item>
- <item>44 | 1.75 | 0.0598 0.0053 0.0651 | 1.5194</item>
- <item>45 | 1.75 | 0.0584 0.0061 0.0645 | 1.4626</item>
- <item>57 | 1.50 | 0.0569 0.0045 0.0613 | 1.0900</item>
- <item>58 | 1.50 | 0.0539 0.0063 0.0603 | 1.0730</item>
- <item>59 | 1.50 | 0.0529 0.0070 0.0599 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 205s</item>
- <item>Prepare output 13s</item>
- <item>218s</item>
- <item>Jacobian determinant (RMS): 0.012 0.044 0.064 0.088 0.110 | 0.116511</item>
- <item>Template Matching: 0.084 0.217 0.195 0.175 0.159 | 0.158789</item>
- <item>Write result maps: 150s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 37s</item>
- <item>CSF distance: 18s</item>
- <item>PBT2x thickness: 53s</item>
- <item>115s</item>
- <item>Create initial surface 98s</item>
- <item>Topology correction: 91s</item>
- <item>Surface refinement: 128s</item>
- <item>Reduction of surface collisions with optimization: 77s</item>
- <item>Spherical mapping with areal smoothing 100s</item>
- <item>Spherical registration 328s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 35s</item>
- <item>CSF distance: 18s</item>
- <item>PBT2x thickness: 53s</item>
- <item>113s</item>
- <item>Create initial surface 95s</item>
- <item>Topology correction: 90s</item>
- <item>Surface refinement: 98s</item>
- <item>Reduction of surface collisions with optimization: 73s</item>
- <item>Spherical mapping with areal smoothing 102s</item>
- <item>Spherical registration 343s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5205 0.6017 mm</item>
- <item>Surface intensity / position RMSE: 0.0651 / 0.0661</item>
- <item>Euler number / defect number / defect size: 22.0 / 10.5 / 0.52%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3099/ds/sub-sc007/surf/lh.thickness.sub-sc007_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3099/ds/sub-sc007/surf/rh.thickness.sub-sc007_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3099/ds/sub-sc007/sub-sc007_T1w.nii</item>
- <item>Surface ROI estimation: 14s</item>
- <item>Surface and thickness estimation takes: 2001s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 14s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 49s</item>
- <item>ROI estimation of 'lpba40' atlas 14s</item>
- <item>ROI estimation of 'hammers' atlas 35s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 12s</item>
- <item>ROI estimation of 'aal3' atlas 20s</item>
- <item>ROI estimation of 'mori' atlas 29s</item>
- <item>ROI estimation of 'anatomy3' atlas 42s</item>
- <item>ROI estimation of 'julichbrain' atlas 56s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 23s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 90s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 137s</item>
- <item>Write results 138s</item>
- <item>567s</item>
- <item>Quality check: 7s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3099/ds/sub-sc007/report/catreport_sub-sc007_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 63 minute(s) and 38 second(s).</item>
- <item>Image Quality Rating (IQR): 83.86% (B)</item>
- <item>GM volume (GMV): 50.32% (655.64 / 1302.95 ml)</item>
- <item>GM thickness (GMT): 2.52 0.60 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3099/ds/sub-sc007/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3099/ds/sub-sc007/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3099/ds/sub-sc007/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|