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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
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- <td>Destrieux</td>
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- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <tissue_mnr>[0.00892694760113955 0.15644459426403 0.598658263683319 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[35.7279161909165 183.766493110241 195.940769589382 121.143414030744]</tissue_std>
- <tissue_stdr>[0.0210040826350451 0.10803446918726 0.115191608667374 0.0712189972400665]</tissue_stdr>
- <contrast>604.731628417969</contrast>
- <contrastr>0.35234197974205</contrastr>
- <NCR>0.103643305599689</NCR>
- <ICR>0.328395217657089</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.79820346832275</contrastr>
- <NCR>1.8188818693161</NCR>
- <ICR>1.27429366111755</ICR>
- <SurfaceEulerNumber>2.02040816326531</SurfaceEulerNumber>
- <SurfaceDefectArea>1.27067340968551</SurfaceDefectArea>
- <SurfaceDefectNumber>1.65</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.32784736156464</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.44098448753357</SurfacePositionRMSE>
- <IQR>1.9241548333548</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220711-090652</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>1.08269363874203</SurfaceDefectArea>
- <SurfaceDefectNumber>13</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0663923695683479</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0720492228865623</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>22</EC_abs>
- <defect_size>1.08269363874203</defect_size>
- <vol_abs_CGW>[372.839941176471 841.43077254902 593.705392156863 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.240145098039216</vol_abs_WMH>
- <vol_rel_WMH>0.000132825371562096</vol_rel_WMH>
- <surf_TSA>2325.77328058003</surf_TSA>
- <vol_TIV>1807.97610588235</vol_TIV>
- <vol_rel_CGW>[0.206219506974354 0.465399277021072 0.328381216004575 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.58452726056306 0.618063114412447]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.57794237136841 0.74793715870222 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.01692725706119 0.254471197473748 0.303536133497077;2.6119519934978 0.17545173260542 0.426934490083119;3.27603680450101 0.270745761734043 0.269529376419803]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.925827453684661 0.346776286784144 0.597572010254864;4.15883657984549 0.308694185500222 0.402427989745136]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>4.09200565864265</vol_TIV>
- <vol_rel_CGW>[1.55351126031526 6.20832034879798 3.74750747134653 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.01328253715621</vol_rel_WMH>
- <surf_TSA>8.6239908477624</surf_TSA>
- <SQR>5.08805969488282</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.128227493979714 1 1 10055.317 0.345809575109374]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00806479807943106 0.00588566577062011 0.234970286488533]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[1018.26507843137 516.637403921569 620.993960784314 840.006674509804 2332.3253254902 6946.00046666667]</SPMvols0>
- <SPMvols1>[905.743745098039 490.313898039216 369.707580392157 1262.0614745098 2076.00982745098 6430.53839215686]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[336.606994628906 1124.08276367188 1751.87060546875]</T3th>
- <Tth>
- <T3th>[0 0 21.4806442260742 336.606994628906 1124.08276367188 1751.87060546875 2459.50244140625 4396.95654296875]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.020050810649991 0.0769908055663109 0.085868626832962 0 0]</dtc>
- <ll>[0.0860009531156213 0 0.0860009531156213 0;0.204089271206529 0.0112819167889324 0.215371187995462 2405.84619140625;0.204089271206529 0.0112819167889324 0.215371187995462 2405.84619140625]</ll>
- <rmsdtc>[0.0426686592400074 0.106100089848042 0.119756206870079]</rmsdtc>
- <rmsgdt>[0.0302831064909697 0.0533375926315784 0.0665977597236633]</rmsgdt>
- <rmsdt>0.119756206870079</rmsdt>
- <dt>0.085868626832962</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00949885137379169 0.0406500808894634 0.0538468696177006 0.0634502172470093 0.0709762200713158 0.0804396420717239]</dtc>
- <ll>[0.0869404385856484 0 0.0869404385856484 0;0.22450525030525 0.0165348958333333 0.241040146138584 8463.7998046875;0.208588339849829 0.0181778413405293 0.226766181190358 13082.810546875;0.187568092165057 0.0204119234003572 0.207980015565414 22009.60546875;0.169441430631782 0.0238701934550945 0.193311624086877 41757.39453125;0.169441430631782 0.0238701934550945 0.193311624086877 41757.39453125]</ll>
- <rmsdtc>[0.0110686970874667 0.0431439578533173 0.0698388367891312 0.0983072370290756 0.12506628036499 0.132818937301636]</rmsdtc>
- <rmsgdt>[0.00332998065277934 0.0140704875811934 0.0320424027740955 0.0552603490650654 0.0751457437872887 0.0819476693868637]</rmsgdt>
- <rmsdt>0.132818937301636</rmsdt>
- <dt>0.0804396420717239</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_40508/ds/sub-14/sub-14_ses-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 50s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 9s</item>
- <item>Estimate background 10s</item>
- <item>Initial correction 10s</item>
- <item>Refine background 4s</item>
- <item>Final correction 8s</item>
- <item>Final scaling 8s</item>
- <item>58s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 15s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 113s</item>
- <item>SPM preprocessing 1 (estimate 2): 110s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 24s</item>
- <item>Update Segmentation 29s</item>
- <item>Update Skull-Stripping 61s</item>
- <item>Update probability maps 12s</item>
- <item>126s</item>
- <item>Global intensity correction: 22s</item>
- <item>SANLM denoising after intensity normalization (medium): 18s</item>
- <item>Fast Optimized Shooting registration 46s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 6s</item>
- <item>Prepare partitions 4s</item>
- <item>Prepare segments (LASmod = 1.07) 23s</item>
- <item>Estimate local tissue thresholds (WM) 28s</item>
- <item>Estimate local tissue thresholds (GM) 42s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 39s</item>
- <item>147s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 12s</item>
- <item>Major structures 5s</item>
- <item>Ventricle detection 21s</item>
- <item>Blood vessel detection 15s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.16) 36s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 5s</item>
- <item>Final corrections 6s</item>
- <item>102s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 43s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>17s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0869 0.0000 0.0869 | 32.0000</item>
- <item>2 | 2.50 | 0.0843 0.0012 0.0855 | 29.4886</item>
- <item>3 | 2.50 | 0.0835 0.0018 0.0853 | 26.9772</item>
- <item>4 | 2.50 | 0.0831 0.0020 0.0852 | 24.6107</item>
- <item>5 | 2.50 | 0.0828 0.0022 0.0850 | 22.6548</item>
- <item>6 | 2.50 | 0.0825 0.0023 0.0848 | 20.6989</item>
- <item>7 | 2.50 | 0.0822 0.0024 0.0846 | 18.9688</item>
- <item>8 | 2.50 | 0.0819 0.0025 0.0844 | 17.4455</item>
- <item>9 | 2.50 | 0.0816 0.0026 0.0842 | 15.9223</item>
- <item>10 | 2.50 | 0.0812 0.0027 0.0839 | 14.6627</item>
- <item>11 | 2.50 | 0.0809 0.0028 0.0837 | 13.4764</item>
- <item>12 | 2.50 | 0.0806 0.0029 0.0834 | 12.3015</item>
- <item>13 | 2.50 | 0.0802 0.0030 0.0832 | 11.3776</item>
- <item>14 | 2.50 | 0.0799 0.0030 0.0829 | 10.4537</item>
- <item>15 | 2.25 | 0.0799 0.0031 0.0830 | 9.5920</item>
- <item>16 | 2.25 | 0.0769 0.0047 0.0816 | 8.8725</item>
- <item>17 | 2.25 | 0.0756 0.0053 0.0809 | 8.1530</item>
- <item>18 | 2.25 | 0.0748 0.0055 0.0803 | 7.5234</item>
- <item>29 | 2.00 | 0.0770 0.0026 0.0796 | 3.3283</item>
- <item>30 | 2.00 | 0.0715 0.0051 0.0766 | 3.1221</item>
- <item>31 | 2.00 | 0.0695 0.0061 0.0756 | 2.9160</item>
- <item>43 | 1.75 | 0.0687 0.0035 0.0721 | 1.5785</item>
- <item>44 | 1.75 | 0.0641 0.0059 0.0700 | 1.5194</item>
- <item>45 | 1.75 | 0.0625 0.0068 0.0693 | 1.4626</item>
- <item>57 | 1.50 | 0.0611 0.0050 0.0661 | 1.0900</item>
- <item>58 | 1.50 | 0.0576 0.0072 0.0649 | 1.0730</item>
- <item>59 | 1.50 | 0.0565 0.0080 0.0644 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 203s</item>
- <item>Prepare output 14s</item>
- <item>217s</item>
- <item>Jacobian determinant (RMS): 0.011 0.043 0.070 0.098 0.125 | 0.132819</item>
- <item>Template Matching: 0.087 0.225 0.209 0.188 0.169 | 0.169441</item>
- <item>Write result maps: 36s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 59s</item>
- <item>CSF distance: 24s</item>
- <item>PBT2x thickness: 69s</item>
- <item>161s</item>
- <item>Create initial surface 124s</item>
- <item>Topology correction: 138s</item>
- <item>Surface refinement: 111s</item>
- <item>Reduction of surface collisions with optimization: 110s</item>
- <item>Spherical mapping with areal smoothing 124s</item>
- <item>Spherical registration 315s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 58s</item>
- <item>CSF distance: 24s</item>
- <item>PBT2x thickness: 68s</item>
- <item>158s</item>
- <item>Create initial surface 213s</item>
- <item>Topology correction: 182s</item>
- <item>Surface refinement: 189s</item>
- <item>Reduction of surface collisions with optimization: 109s</item>
- <item>Spherical mapping with areal smoothing 131s</item>
- <item>Spherical registration 349s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5844 0.6177 mm</item>
- <item>Surface intensity / position RMSE: 0.0664 / 0.0720</item>
- <item>Euler number / defect number / defect size: 22.0 / 13.0 / 1.08%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_40508/ds/sub-14/surf/lh.thickness.sub-14_ses-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_40508/ds/sub-14/surf/rh.thickness.sub-14_ses-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_40508/ds/sub-14/sub-14_ses-01_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 2585s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 14s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 50s</item>
- <item>ROI estimation of 'lpba40' atlas 15s</item>
- <item>ROI estimation of 'hammers' atlas 38s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 13s</item>
- <item>ROI estimation of 'aal3' atlas 21s</item>
- <item>ROI estimation of 'mori' atlas 32s</item>
- <item>ROI estimation of 'anatomy3' atlas 43s</item>
- <item>ROI estimation of 'julichbrain' atlas 62s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 88s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 131s</item>
- <item>Write results 132s</item>
- <item>577s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_40508/ds/sub-14/report/catreport_sub-14_ses-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 73 minute(s) and 29 second(s).</item>
- <item>Image Quality Rating (IQR): 85.76% (B)</item>
- <item>GM volume (GMV): 46.54% (841.43 / 1807.98 ml)</item>
- <item>GM thickness (GMT): 2.58 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_40508/ds/sub-14/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_40508/ds/sub-14/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_40508/ds/sub-14/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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