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- <parameter>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <NCstr>-Inf</NCstr>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
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- <td>Destrieux</td>
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- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
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- <td>1</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <optimal>[1 0.3]</optimal>
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- <tissue_mnr>[0.0590492933988571 0.253300338983536 0.687634468078613 0.999999940395355]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[66.990783451068 186.089746661039 181.828989842316 114.720950527529]</tissue_std>
- <tissue_stdr>[0.0485444962978363 0.134848892688751 0.131761357188225 0.0831318944692612]</tissue_stdr>
- <contrast>486.860321044922</contrast>
- <contrastr>0.331967979669571</contrastr>
- <NCR>0.13181272149086</NCR>
- <ICR>0.892478764057159</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.19999694824219 2 2]</res_vx_vol>
- <res_RMS>2.06881500480146</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.10381364822388</contrastr>
- <NCR>2.22326612472534</NCR>
- <ICR>2.67331027984619</ICR>
- <SurfaceEulerNumber>2.12244897959184</SurfaceEulerNumber>
- <SurfaceDefectArea>1.17237956040206</SurfaceDefectArea>
- <SurfaceDefectNumber>1.7</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.34128260612488</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.34761095046997</SurfacePositionRMSE>
- <IQR>2.15564662207976</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220711-130258</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>24</SurfaceEulerNumber>
- <SurfaceDefectArea>0.689518241608231</SurfaceDefectArea>
- <SurfaceDefectNumber>14</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0670641288161278</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0673805475234985</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>24</EC_abs>
- <defect_size>0.689518241608231</defect_size>
- <vol_abs_CGW>[342.924058425544 707.204811539564 574.645535421095 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.05323775467218</vol_abs_WMH>
- <vol_rel_WMH>0.000648236303563528</vol_rel_WMH>
- <surf_TSA>2028.19879396409</surf_TSA>
- <vol_TIV>1624.7744053862</vol_TIV>
- <vol_rel_CGW>[0.211059490652201 0.435263387455604 0.353677121892195 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.4992886706384 0.642535598103904]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.50561189651489 0.805644290656366 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.81179234043513 0.295925115125388 0.25670016239118;2.49481007431738 0.186236932282684 0.455073808622605;3.17311311798863 0.285487496497552 0.288226028986215]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.801058502090074 0.234050396124737 0.568045245669848;4.21387418948492 0.383086216735453 0.431954754330152]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>2.11350737931878</vol_TIV>
- <vol_rel_CGW>[1.64043625452947 5.66708669999289 4.20181612593741 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.06482363035635</vol_rel_WMH>
- <surf_TSA>8.6223339034706</surf_TSA>
- <SQR>4.68528067472985</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.221329758806926 40 6 9205.96752980804 0.705521970106329]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.076114721596241 0.0702756196260452 0.249399915337563]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[903.693937016027 546.074929955187 528.881108315651 837.240622138887 1576.09713918409 8422.38731793922]</SPMvols0>
- <SPMvols1>[769.541880361909 507.608043707245 305.108953626416 817.25283888484 986.63012942086 8437.57938392415]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[414.248687744141 1046.55712890625 1466.67578125]</T3th>
- <Tth>
- <T3th>[0 0 97.0620422363281 414.248687744141 1046.55712890625 1466.67578125 1992.88940429688 4817.2490234375]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0205171220004559 0.0715548768639565 0.0785671398043633 0 0]</dtc>
- <ll>[0.0837944186463648 0 0.0837944186463648 0;0.198435422753086 0.0104435718073851 0.208878994560471 2227.07080078125;0.198435422753086 0.0104435718073851 0.208878994560471 2227.07080078125]</ll>
- <rmsdtc>[0.045157253742218 0.0931475386023521 0.104613661766052]</rmsdtc>
- <rmsgdt>[0.0323011465370655 0.0477286651730537 0.0589578375220299]</rmsgdt>
- <rmsdt>0.104613661766052</rmsdt>
- <dt>0.0785671398043633</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0100781414657831 0.0406609959900379 0.0541589371860027 0.0642980262637138 0.0717490017414093 0.0817238241434097]</dtc>
- <ll>[0.0874064673900248 0 0.0874064673900248 0;0.224864010989011 0.017379014041514 0.242243025030525 8895.8828125;0.207456354937808 0.0193159457793534 0.226772300717162 13901.91796875;0.185470740453244 0.021525478091335 0.206996218544579 23210.3203125;0.167925888171227 0.0247723997815192 0.192698287952746 43335.671875;0.167925888171227 0.0247723997815192 0.192698287952746 43335.671875]</ll>
- <rmsdtc>[0.011514650657773 0.0420878492295742 0.0674352869391441 0.0961417034268379 0.124529547989368 0.133084148168564]</rmsdtc>
- <rmsgdt>[0.00357792316935956 0.0147709790617228 0.0323408506810665 0.0551863349974155 0.075991578400135 0.0821364969015121]</rmsgdt>
- <rmsdt>0.133084148168564</rmsdt>
- <dt>0.0817238241434097</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./execute/dir_13301/ds/sub-429/sub-429_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 93s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 13s</item>
- <item>Initial correction 11s</item>
- <item>Refine background 5s</item>
- <item>Final correction 9s</item>
- <item>Final scaling 11s</item>
- <item>65s</item>
- <item>Correct center-of-mass 15s</item>
- <item>Affine registration 13s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 105s</item>
- <item>SPM preprocessing 1 (estimate 2): 78s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 21s</item>
- <item>Update Segmentation 24s</item>
- <item>Update Skull-Stripping 50s</item>
- <item>Update probability maps 11s</item>
- <item>106s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 9s</item>
- <item>Fast Optimized Shooting registration 44s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.00) 19s</item>
- <item>Estimate local tissue thresholds (WM) 28s</item>
- <item>Estimate local tissue thresholds (GM) 38s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 36s</item>
- <item>133s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 16s</item>
- <item>Blood vessel detection 13s</item>
- <item>WMH detection (WMHCstr=0.48 > WMHCstr'=0.09) 33s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 6s</item>
- <item>86s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 39s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.24):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>15s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0874 0.0000 0.0874 | 32.0000</item>
- <item>2 | 2.50 | 0.0846 0.0012 0.0858 | 29.4886</item>
- <item>3 | 2.50 | 0.0837 0.0019 0.0856 | 26.9772</item>
- <item>4 | 2.50 | 0.0833 0.0021 0.0854 | 24.6107</item>
- <item>5 | 2.50 | 0.0829 0.0023 0.0852 | 22.6548</item>
- <item>6 | 2.50 | 0.0826 0.0024 0.0850 | 20.6989</item>
- <item>7 | 2.50 | 0.0823 0.0025 0.0848 | 18.9688</item>
- <item>8 | 2.50 | 0.0820 0.0026 0.0846 | 17.4455</item>
- <item>9 | 2.50 | 0.0816 0.0027 0.0844 | 15.9223</item>
- <item>10 | 2.50 | 0.0813 0.0029 0.0841 | 14.6627</item>
- <item>11 | 2.50 | 0.0809 0.0030 0.0839 | 13.4764</item>
- <item>12 | 2.50 | 0.0806 0.0030 0.0836 | 12.3015</item>
- <item>13 | 2.50 | 0.0802 0.0032 0.0833 | 11.3776</item>
- <item>14 | 2.50 | 0.0798 0.0032 0.0830 | 10.4537</item>
- <item>15 | 2.25 | 0.0804 0.0033 0.0837 | 9.5920</item>
- <item>16 | 2.25 | 0.0771 0.0049 0.0820 | 8.8725</item>
- <item>17 | 2.25 | 0.0758 0.0055 0.0813 | 8.1530</item>
- <item>18 | 2.25 | 0.0750 0.0058 0.0807 | 7.5234</item>
- <item>29 | 2.00 | 0.0770 0.0028 0.0798 | 3.3283</item>
- <item>30 | 2.00 | 0.0712 0.0054 0.0766 | 3.1221</item>
- <item>31 | 2.00 | 0.0692 0.0064 0.0756 | 2.9160</item>
- <item>43 | 1.75 | 0.0682 0.0037 0.0719 | 1.5785</item>
- <item>44 | 1.75 | 0.0635 0.0062 0.0697 | 1.5194</item>
- <item>45 | 1.75 | 0.0618 0.0072 0.0690 | 1.4626</item>
- <item>57 | 1.50 | 0.0606 0.0053 0.0658 | 1.0900</item>
- <item>58 | 1.50 | 0.0571 0.0075 0.0647 | 1.0730</item>
- <item>59 | 1.50 | 0.0560 0.0083 0.0642 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 222s</item>
- <item>Prepare output 14s</item>
- <item>236s</item>
- <item>Jacobian determinant (RMS): 0.012 0.042 0.067 0.096 0.125 | 0.133084</item>
- <item>Template Matching: 0.087 0.225 0.207 0.185 0.168 | 0.167926</item>
- <item>Write result maps: 35s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 61s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 60s</item>
- <item>150s</item>
- <item>Create initial surface 108s</item>
- <item>Topology correction: 149s</item>
- <item>Surface refinement: 90s</item>
- <item>Reduction of surface collisions with optimization: 88s</item>
- <item>Spherical mapping with areal smoothing 118s</item>
- <item>Spherical registration 346s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 53s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 61s</item>
- <item>143s</item>
- <item>Create initial surface 113s</item>
- <item>Topology correction: 118s</item>
- <item>Surface refinement: 102s</item>
- <item>Reduction of surface collisions with optimization: 90s</item>
- <item>Spherical mapping with areal smoothing 122s</item>
- <item>Spherical registration 360s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4995 0.6423 mm</item>
- <item>Surface intensity / position RMSE: 0.0671 / 0.0674</item>
- <item>Euler number / defect number / defect size: 24.0 / 14.0 / 0.69%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_13301/ds/sub-429/surf/lh.thickness.sub-429_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_13301/ds/sub-429/surf/rh.thickness.sub-429_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_13301/ds/sub-429/sub-429_T1w.nii</item>
- <item>Surface ROI estimation: 46s</item>
- <item>Surface and thickness estimation takes: 2277s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 11s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 39s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 27s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 10s</item>
- <item>ROI estimation of 'aal3' atlas 16s</item>
- <item>ROI estimation of 'mori' atlas 23s</item>
- <item>ROI estimation of 'anatomy3' atlas 33s</item>
- <item>ROI estimation of 'julichbrain' atlas 44s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 33s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 65s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 111s</item>
- <item>Write results 112s</item>
- <item>445s</item>
- <item>Quality check: 6s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_13301/ds/sub-429/report/catreport_sub-429_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 65 minute(s) and 30 second(s).</item>
- <item>Image Quality Rating (IQR): 83.44% (B)</item>
- <item>GM volume (GMV): 43.53% (707.20 / 1624.77 ml)</item>
- <item>GM thickness (GMT): 2.50 0.64 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_13301/ds/sub-429/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_13301/ds/sub-429/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_13301/ds/sub-429/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|