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- <F>/var/lib/condor/execute/dir_20259/ds/sub-01/sub-01_T1w.nii</F>
- <Fm>/var/lib/condor/execute/dir_20259/ds/sub-01/mri/msub-01_T1w.nii</Fm>
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- <fnames>..20259/ds/sub-01/sub-01_T1w</fnames>
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- <parameter>
- <opts>
- <tpm>
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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
- <gcutstr>2</gcutstr>
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- <spm_kamap>0</spm_kamap>
- <NCstr>-Inf</NCstr>
- <LASstr>0.5</LASstr>
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- <WMHC>2</WMHC>
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- <mrf>1</mrf>
- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_1980</bids_folder>
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- <nproc>32</nproc>
- <species>human</species>
- <APP>1070</APP>
- <setCOM>1</setCOM>
- <vox>1.5</vox>
- <bb>12</bb>
- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
- <SRP>22</SRP>
- <reduce_mesh>1</reduce_mesh>
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- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
- <colormap>BCGWHw</colormap>
- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
- </tr>
- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <PH>25</PH>
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- <shootingtpm>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- <pbtmethod>pbt2x</pbtmethod>
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- <templates>
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- </templates>
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- <SurfaceEulerNumber>28</SurfaceEulerNumber>
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- <tissue_mnr>[0.0196442026644945 0.0795134305953979 0.566257357597351 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[2.11730490868946 18.5353486520109 13.2795360492031 7.78493341648275]</tissue_std>
- <tissue_stdr>[0.0209615584462881 0.183502063155174 0.131468921899796 0.0770717263221741]</tissue_stdr>
- <contrast>35.5305557250977</contrast>
- <contrastr>0.344846546649933</contrastr>
- <NCR>0.0843914151191711</NCR>
- <ICR>0.0670401751995087</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.31805419921875 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.91063499450684</contrastr>
- <NCR>1.5425124168396</NCR>
- <ICR>0.626091718673706</ICR>
- <SurfaceEulerNumber>2.3265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.35513248671738</SurfaceDefectArea>
- <SurfaceDefectNumber>1.8</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.45517802238464</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.74553561210632</SurfacePositionRMSE>
- <IQR>1.86125018439022</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220711-105948</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>1.42052994686953</SurfaceDefectArea>
- <SurfaceDefectNumber>16</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0727588981389999</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0872767791152</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>28</EC_abs>
- <defect_size>1.42052994686953</defect_size>
- <vol_abs_CGW>[344.735368627451 788.373894117647 633.04551372549 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.45033725490196</vol_abs_WMH>
- <vol_rel_WMH>0.000821183553233231</vol_rel_WMH>
- <surf_TSA>2285.29666032756</surf_TSA>
- <vol_TIV>1766.15477647059</vol_TIV>
- <vol_rel_CGW>[0.195189783602293 0.446378711889057 0.358431504508649 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.36419799933192 0.615368030563662]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.36055707931519 0.724155490228346 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.77356651118884 0.24521699334817 0.304727777386251;2.3873319724639 0.174536319643375 0.42151542585776;3.03064070218119 0.256126886057469 0.273756796755989]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.795654432321122 0.288498507645809 0.554828660436137;3.97557801842439 0.389283223687082 0.445171339563863]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>3.60949586420133</vol_TIV>
- <vol_rel_CGW>[1.35541996412165 5.86671537157071 4.28720374476741 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.08211835532332</vol_rel_WMH>
- <surf_TSA>8.62398001346173</surf_TSA>
- <SQR>4.84472118962476</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.458880603313446 323 46 9078.477 0.60708184306481]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.0631041526794434]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[1260.9039254902 289.619819607843 644.441701960784 635.29871372549 3366.80341568627 11441.1861333333]</SPMvols0>
- <SPMvols1>[1081.50056862745 292.653282352941 353.118552941176 693.174890196078 1557.98770588235 12799.7293921569]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[14.9485998153687 59.842601776123 109.844497680664]</T3th>
- <Tth>
- <T3th>[0 0 1.76381993293762 14.9485998153687 59.842601776123 109.844497680664 157.292449951172 265.906555175781]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0188961401581764 0.082720972597599 0.0970985516905785 0 0]</dtc>
- <ll>[0.0942597986460209 0 0.0942597986460209 0;0.219983104325715 0.0149919422877794 0.234975046613494 3197.00170898438;0.219983104325715 0.0149919422877794 0.234975046613494 3197.00170898438]</ll>
- <rmsdtc>[0.0436942875385284 0.130298063158989 0.154712706804276]</rmsdtc>
- <rmsgdt>[0.031660620123148 0.0776141360402107 0.0985928177833557]</rmsgdt>
- <rmsdt>0.154712706804276</rmsdt>
- <dt>0.0970985516905785</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00816159322857857 0.0403502434492111 0.0419702380895615 0.052016980946064 0.0596282556653023 0.0665662959218025]</dtc>
- <ll>[0.0900145463413729 0 0.0900145463413729 0;0.224360958485958 0.0157297714438339 0.240090729929792 8051.6767578125;0.221075604721055 0.0167128347649824 0.237788439486037 12028.427734375;0.198466548213252 0.0201517831452778 0.21861833135853 21729.103515625;0.18043667430187 0.0241291173079419 0.204565791609812 42210.34375;0.18043667430187 0.0241291173079419 0.204565791609812 42210.34375]</ll>
- <rmsdtc>[0.00968340132385492 0.0346360802650452 0.0582598075270653 0.0789509788155556 0.106185115873814 0.113193094730377]</rmsdtc>
- <rmsgdt>[0.00309837772510946 0.0121511127799749 0.029097018763423 0.0496036261320114 0.0715557187795639 0.0777200013399124]</rmsgdt>
- <rmsdt>0.113193094730377</rmsdt>
- <dt>0.0665662959218025</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./condor/execute/dir_20259/ds/sub-01/sub-01_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 75s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 9s</item>
- <item>Estimate background 9s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 5s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 7s</item>
- <item>52s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 78s</item>
- <item>SPM preprocessing 1 (estimate 2): 62s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 21s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 57s</item>
- <item>Update probability maps 12s</item>
- <item>112s</item>
- <item>Global intensity correction: 22s</item>
- <item>SANLM denoising after intensity normalization (medium): 26s</item>
- <item>Fast Optimized Shooting registration 37s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 5s</item>
- <item>Prepare segments (LASmod = 1.07) 17s</item>
- <item>Estimate local tissue thresholds (WM) 23s</item>
- <item>Estimate local tissue thresholds (GM) 31s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 31s</item>
- <item>118s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 10s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 19s</item>
- <item>Blood vessel detection 12s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.09) 29s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 6s</item>
- <item>85s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.07): 40s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.09,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>14s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0900 0.0000 0.0900 | 32.0000</item>
- <item>2 | 2.50 | 0.0869 0.0013 0.0882 | 29.4886</item>
- <item>3 | 2.50 | 0.0861 0.0019 0.0880 | 26.9772</item>
- <item>4 | 2.50 | 0.0856 0.0022 0.0878 | 24.6107</item>
- <item>5 | 2.50 | 0.0853 0.0023 0.0876 | 22.6548</item>
- <item>6 | 2.50 | 0.0850 0.0024 0.0874 | 20.6989</item>
- <item>7 | 2.50 | 0.0847 0.0025 0.0872 | 18.9688</item>
- <item>8 | 2.50 | 0.0844 0.0026 0.0870 | 17.4455</item>
- <item>9 | 2.50 | 0.0841 0.0026 0.0867 | 15.9223</item>
- <item>10 | 2.50 | 0.0838 0.0027 0.0865 | 14.6627</item>
- <item>11 | 2.50 | 0.0835 0.0028 0.0862 | 13.4764</item>
- <item>12 | 2.50 | 0.0831 0.0028 0.0859 | 12.3015</item>
- <item>13 | 2.50 | 0.0828 0.0029 0.0857 | 11.3776</item>
- <item>14 | 2.50 | 0.0825 0.0029 0.0854 | 10.4537</item>
- <item>15 | 2.25 | 0.0828 0.0030 0.0858 | 9.5920</item>
- <item>16 | 2.25 | 0.0797 0.0045 0.0842 | 8.8725</item>
- <item>17 | 2.25 | 0.0786 0.0050 0.0836 | 8.1530</item>
- <item>18 | 2.25 | 0.0779 0.0052 0.0831 | 7.5234</item>
- <item>19 | 2.25 | 0.0774 0.0053 0.0826 | 6.9630</item>
- <item>20 | 2.25 | 0.0769 0.0053 0.0821 | 6.4027</item>
- <item>21 | 2.25 | 0.0764 0.0053 0.0817 | 5.9447</item>
- <item>22 | 2.25 | 0.0760 0.0053 0.0813 | 5.5083</item>
- <item>23 | 2.25 | 0.0756 0.0052 0.0808 | 5.0803</item>
- <item>24 | 2.25 | 0.0752 0.0053 0.0804 | 4.7404</item>
- <item>25 | 2.25 | 0.0748 0.0052 0.0800 | 4.4005</item>
- <item>29 | 2.00 | 0.0769 0.0041 0.0810 | 3.3283</item>
- <item>30 | 2.00 | 0.0737 0.0056 0.0793 | 3.1221</item>
- <item>43 | 1.75 | 0.0730 0.0031 0.0760 | 1.5785</item>
- <item>44 | 1.75 | 0.0678 0.0058 0.0736 | 1.5194</item>
- <item>45 | 1.75 | 0.0662 0.0067 0.0729 | 1.4626</item>
- <item>57 | 1.50 | 0.0650 0.0049 0.0698 | 1.0900</item>
- <item>58 | 1.50 | 0.0613 0.0073 0.0686 | 1.0730</item>
- <item>59 | 1.50 | 0.0601 0.0080 0.0682 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 180s</item>
- <item>Prepare output 12s</item>
- <item>192s</item>
- <item>Jacobian determinant (RMS): 0.010 0.035 0.058 0.079 0.106 | 0.113193</item>
- <item>Template Matching: 0.090 0.224 0.221 0.198 0.180 | 0.180437</item>
- <item>Write result maps: 33s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 51s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 54s</item>
- <item>131s</item>
- <item>Create initial surface 102s</item>
- <item>Topology correction: 115s</item>
- <item>Surface refinement: 106s</item>
- <item>Reduction of surface collisions with optimization: 88s</item>
- <item>Spherical mapping with areal smoothing 93s</item>
- <item>Spherical registration 290s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 32s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 53s</item>
- <item>111s</item>
- <item>Create initial surface 104s</item>
- <item>Topology correction: 121s</item>
- <item>Surface refinement: 109s</item>
- <item>Reduction of surface collisions with optimization: 91s</item>
- <item>Spherical mapping with areal smoothing 123s</item>
- <item>Spherical registration 329s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.3639 0.6132 mm</item>
- <item>Surface intensity / position RMSE: 0.0728 / 0.0873</item>
- <item>Euler number / defect number / defect size: 28.0 / 16.0 / 1.42%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_20259/ds/sub-01/surf/lh.thickness.sub-01_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_20259/ds/sub-01/surf/rh.thickness.sub-01_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_20259/ds/sub-01/sub-01_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 2029s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 12s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 43s</item>
- <item>ROI estimation of 'lpba40' atlas 12s</item>
- <item>ROI estimation of 'hammers' atlas 30s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 11s</item>
- <item>ROI estimation of 'aal3' atlas 19s</item>
- <item>ROI estimation of 'mori' atlas 26s</item>
- <item>ROI estimation of 'anatomy3' atlas 38s</item>
- <item>ROI estimation of 'julichbrain' atlas 49s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 79s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 115s</item>
- <item>Write results 116s</item>
- <item>493s</item>
- <item>Quality check: 6s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_20259/ds/sub-01/report/catreport_sub-01_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 59 minute(s) and 53 second(s).</item>
- <item>Image Quality Rating (IQR): 86.39% (B)</item>
- <item>GM volume (GMV): 44.64% (788.37 / 1766.15 ml)</item>
- <item>GM thickness (GMT): 2.36 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_20259/ds/sub-01/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_20259/ds/sub-01/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_20259/ds/sub-01/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|