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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <VT>15</VT>
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- <regstr>0.5</regstr>
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- <optimal>[1 0.3]</optimal>
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- <templates>
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- <SurfaceEulerNumber>36</SurfaceEulerNumber>
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- <res_BB>0</res_BB>
- <tissue_mn>[0 19792.82421875 44363.73046875 63864.33984375]</tissue_mn>
- <tissue_mnr>[0 0.309919804334641 0.69465571641922 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3358.70894933842 7263.73488011672 6355.87491059223 3657.87668027158]</tissue_std>
- <tissue_stdr>[0.0525913052260876 0.113736942410469 0.0995215028524399 0.0572757311165333]</tissue_stdr>
- <contrast>19500.609375</contrast>
- <contrastr>0.305344253778458</contrastr>
- <NCR>0.15272082388401</NCR>
- <ICR>0.306378334760666</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.9999840548709 1.99999993769796 2.00000002710733]</res_vx_vol>
- <res_RMS>1.99999467323949</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.50316953659058</contrastr>
- <NCR>2.5234112739563</NCR>
- <ICR>1.21968829631805</ICR>
- <SurfaceEulerNumber>2.73469387755102</SurfaceEulerNumber>
- <SurfaceDefectArea>1.33986007739228</SurfaceDefectArea>
- <SurfaceDefectNumber>2.125</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.37537813186646</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.47797679901123</SurfacePositionRMSE>
- <IQR>2.3562185193089</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220713-035654</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>36</SurfaceEulerNumber>
- <SurfaceDefectArea>1.35944030956912</SurfaceDefectArea>
- <SurfaceDefectNumber>22.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0687689036130905</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0738988369703293</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>36</EC_abs>
- <defect_size>1.35944030956912</defect_size>
- <vol_abs_CGW>[296.512818986889 663.989412123133 587.192425759798 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.4465962842915</vol_abs_WMH>
- <vol_rel_WMH>0.000934678089034184</vol_rel_WMH>
- <surf_TSA>1972.27718242783</surf_TSA>
- <vol_TIV>1547.69465686982</vol_TIV>
- <vol_rel_CGW>[0.191583538568635 0.429018352667856 0.379398108763509 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.48640263241731 0.650135218182522]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.50685143470764 0.812803183929439 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.74830396325346 0.294040338078051 0.243803765674332;2.47956176455697 0.190625653064898 0.463781268774047;3.15289857733511 0.29010157013158 0.292414965551621]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.775066160263043 0.217810222657137 0.531377106333527;4.22935818896655 0.383127084222215 0.468622893666473]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.50239360401496</vol_TIV>
- <vol_rel_CGW>[1.29065263233899 5.55492731084511 4.66375913727567 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.09346780890342</vol_rel_WMH>
- <surf_TSA>8.6201445227127</surf_TSA>
- <SQR>4.66965706012704</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.435662712191358 8330 2077 5851.002249172 0.381323312072047]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.395853370428085]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[799.274331145994 553.502643973372 459.32229454883 1037.91244002446 4026.93685071831 4212.71202512866]</SPMvols0>
- <SPMvols1>[696.612845567336 520.261289976389 286.876990098416 1130.31472522503 3472.65453846498 4261.21895126566]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[22588.9609375 46859.5625 61814.46484375]</T3th>
- <Tth>
- <T3th>[0 0 800.806030273438 22588.9609375 46859.5625 61814.46484375 81427.21875 113935.8203125]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0228330921381712 0.0920687094330788 0.102267771959305 0 0]</dtc>
- <ll>[0.0855863585668643 0 0.0855863585668643 0;0.186279919682717 0.0127762752134545 0.199056194896171 2724.51513671875;0.186279919682717 0.0127762752134545 0.199056194896171 2724.51513671875]</ll>
- <rmsdtc>[0.0513514690101147 0.116124354302883 0.128286987543106]</rmsdtc>
- <rmsgdt>[0.0371028482913971 0.0508250519633293 0.0616475865244865]</rmsgdt>
- <rmsdt>0.128286987543106</rmsdt>
- <dt>0.102267771959305</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0115716811269522 0.0465080142021179 0.0681397542357445 0.0769911482930183 0.082510307431221 0.093913696706295]</dtc>
- <ll>[0.0862565669785401 0 0.0862565669785401 0;0.217553006715507 0.0185258356227106 0.236078842338217 9482.912109375;0.189164815231648 0.0208701983940278 0.210035013625676 15020.5322265625;0.16735055892669 0.0212830636802449 0.188633622606935 22948.931640625;0.151029998662363 0.023404588278495 0.174434586940858 40942.88671875;0.151029998662363 0.023404588278495 0.174434586940858 40942.88671875]</ll>
- <rmsdtc>[0.0132515076547861 0.0514725409448147 0.0780489519238472 0.107229299843311 0.130280777812004 0.138228848576546]</rmsdtc>
- <rmsgdt>[0.00378249329514802 0.0155470762401819 0.0321524478495121 0.0521497391164303 0.0688046962022781 0.0741406232118607]</rmsgdt>
- <rmsdt>0.138228848576546</rmsdt>
- <dt>0.093913696706295</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_11847/ds/sub-041/sub-041_ses-t0_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 11s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 5s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 5s</item>
- <item>34s</item>
- <item>Correct center-of-mass 2s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 72s</item>
- <item>SPM preprocessing 1 (estimate 2): 52s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 13s</item>
- <item>Update Segmentation 16s</item>
- <item>Update Skull-Stripping 33s</item>
- <item>Update probability maps 7s</item>
- <item>68s</item>
- <item>Global intensity correction: 12s</item>
- <item>SANLM denoising after intensity normalization (medium): 6s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.17) 12s</item>
- <item>Estimate local tissue thresholds (WM) 15s</item>
- <item>Estimate local tissue thresholds (GM) 18s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 16s</item>
- <item>68s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 12s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.07) 25s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 3s</item>
- <item>62s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 30s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>10s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0863 0.0000 0.0863 | 32.0000</item>
- <item>2 | 2.50 | 0.0825 0.0015 0.0840 | 29.4886</item>
- <item>3 | 2.50 | 0.0814 0.0023 0.0837 | 26.9772</item>
- <item>4 | 2.50 | 0.0808 0.0027 0.0835 | 24.6107</item>
- <item>5 | 2.50 | 0.0803 0.0029 0.0832 | 22.6548</item>
- <item>6 | 2.50 | 0.0799 0.0030 0.0830 | 20.6989</item>
- <item>7 | 2.50 | 0.0795 0.0032 0.0827 | 18.9688</item>
- <item>8 | 2.50 | 0.0791 0.0033 0.0824 | 17.4455</item>
- <item>9 | 2.50 | 0.0786 0.0034 0.0821 | 15.9223</item>
- <item>10 | 2.50 | 0.0781 0.0036 0.0817 | 14.6627</item>
- <item>11 | 2.50 | 0.0777 0.0037 0.0814 | 13.4764</item>
- <item>12 | 2.50 | 0.0772 0.0038 0.0810 | 12.3015</item>
- <item>13 | 2.50 | 0.0767 0.0040 0.0807 | 11.3776</item>
- <item>14 | 2.50 | 0.0762 0.0041 0.0803 | 10.4537</item>
- <item>15 | 2.25 | 0.0764 0.0043 0.0806 | 9.5920</item>
- <item>16 | 2.25 | 0.0725 0.0062 0.0787 | 8.8725</item>
- <item>29 | 2.00 | 0.0731 0.0028 0.0759 | 3.3283</item>
- <item>30 | 2.00 | 0.0657 0.0058 0.0715 | 3.1221</item>
- <item>31 | 2.00 | 0.0631 0.0070 0.0700 | 2.9160</item>
- <item>43 | 1.75 | 0.0615 0.0041 0.0656 | 1.5785</item>
- <item>44 | 1.75 | 0.0572 0.0063 0.0635 | 1.5194</item>
- <item>45 | 1.75 | 0.0558 0.0071 0.0629 | 1.4626</item>
- <item>57 | 1.50 | 0.0543 0.0053 0.0596 | 1.0900</item>
- <item>58 | 1.50 | 0.0513 0.0072 0.0585 | 1.0730</item>
- <item>59 | 1.50 | 0.0503 0.0078 0.0581 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 133s</item>
- <item>Prepare output 9s</item>
- <item>141s</item>
- <item>Jacobian determinant (RMS): 0.013 0.051 0.078 0.107 0.130 | 0.138229</item>
- <item>Template Matching: 0.086 0.218 0.189 0.167 0.151 | 0.151030</item>
- <item>Write result maps: 18s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 46s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 38s</item>
- <item>103s</item>
- <item>Create initial surface 75s</item>
- <item>Topology correction: 82s</item>
- <item>Surface refinement: 54s</item>
- <item>Reduction of surface collisions with optimization: 58s</item>
- <item>Spherical mapping with areal smoothing 65s</item>
- <item>Spherical registration 249s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 47s</item>
- <item>CSF distance: 12s</item>
- <item>PBT2x thickness: 38s</item>
- <item>103s</item>
- <item>Create initial surface 74s</item>
- <item>Topology correction: 80s</item>
- <item>Surface refinement: 63s</item>
- <item>Reduction of surface collisions with optimization: 58s</item>
- <item>Spherical mapping with areal smoothing 65s</item>
- <item>Spherical registration 250s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4864 0.6500 mm</item>
- <item>Surface intensity / position RMSE: 0.0688 / 0.0739</item>
- <item>Euler number / defect number / defect size: 36.0 / 22.5 / 1.36%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_11847/ds/sub-041/surf/lh.thickness.sub-041_ses-t0_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_11847/ds/sub-041/surf/rh.thickness.sub-041_ses-t0_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_11847/ds/sub-041/sub-041_ses-t0_T1w.nii</item>
- <item>Surface ROI estimation: 6s</item>
- <item>Surface and thickness estimation takes: 1452s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 6s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 22s</item>
- <item>ROI estimation of 'lpba40' atlas 6s</item>
- <item>ROI estimation of 'hammers' atlas 16s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 9s</item>
- <item>ROI estimation of 'mori' atlas 13s</item>
- <item>ROI estimation of 'anatomy3' atlas 19s</item>
- <item>ROI estimation of 'julichbrain' atlas 25s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 18s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 41s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 60s</item>
- <item>Write results 61s</item>
- <item>254s</item>
- <item>Quality check: 4s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_11847/ds/sub-041/report/catreport_sub-041_ses-t0_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 40 minute(s) and 3 second(s).</item>
- <item>Image Quality Rating (IQR): 81.44% (B-)</item>
- <item>GM volume (GMV): 42.90% (663.99 / 1547.69 ml)</item>
- <item>GM thickness (GMT): 2.49 0.65 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_11847/ds/sub-041/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_11847/ds/sub-041/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_11847/ds/sub-041/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|