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- <ngaus>[1 1 2 3 4 2]</ngaus>
- <affreg>mni</affreg>
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- <extopts>
- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <report/>
- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
- <item>wm</item>
- </td>
- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <optimal>[1 0.3]</optimal>
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- <res_BB>0</res_BB>
- <tissue_mn>[179.70100402832 20969.560546875 47068.6796875 66548.8125]</tissue_mn>
- <tissue_mnr>[0.00270028878003359 0.315100461244583 0.707280576229095 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[12357.1359614488 9291.45399952308 6496.67375459996 3542.32576126109]</tissue_std>
- <tissue_stdr>[0.18618805706501 0.139996662735939 0.0978870093822479 0.053373109549284]</tissue_stdr>
- <contrast>19532.876953125</contrast>
- <contrastr>0.293512046337128</contrastr>
- <NCR>0.124739252030849</NCR>
- <ICR>0.271901845932007</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.00000021853677 2.0000000308789 2.00000000800667]</res_vx_vol>
- <res_RMS>2.00000008580745</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.6806526184082</contrastr>
- <NCR>2.12172341346741</NCR>
- <ICR>1.13418114185333</ICR>
- <SurfaceEulerNumber>1.61224489795918</SurfaceEulerNumber>
- <SurfaceDefectArea>1.11393836694074</SurfaceDefectArea>
- <SurfaceDefectNumber>1.575</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.25573968887329</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.30137181282043</SurfacePositionRMSE>
- <IQR>2.06709979582196</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220713-024139</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>14</SurfaceEulerNumber>
- <SurfaceDefectArea>0.455753467762961</SurfaceDefectArea>
- <SurfaceDefectNumber>11.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0627869814634323</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0650685876607895</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>14</EC_abs>
- <defect_size>0.455753467762961</defect_size>
- <vol_abs_CGW>[203.796124266909 530.776472230239 485.617450732191 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.761454999956798</vol_abs_WMH>
- <vol_rel_WMH>0.000624046230901341</vol_rel_WMH>
- <surf_TSA>1583.8060719198</surf_TSA>
- <vol_TIV>1220.19004722934</vol_TIV>
- <vol_rel_CGW>[0.167019985722441 0.434994920205637 0.397985094071922 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.3551148604183 0.605200169302061]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.35760855674744 0.770956029606615 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.75060960506247 0.261826746043003 0.291409446486192;2.37961928774077 0.172060734436657 0.454741258517291;3.00814371507775 0.275481190516605 0.253849294996517]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.778231286938637 0.233394373399843 0.516933831505363;4.09407951470145 0.42602479421832 0.483066168494637]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.7326647843805</vol_TIV>
- <vol_rel_CGW>[0.849496870015101 5.6622650899001 4.99757712054457 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.06240462309013</vol_rel_WMH>
- <surf_TSA>8.23482441276795</surf_TSA>
- <SQR>4.81548498983543</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.560658564814815 11558 2947 4555.09258629122 0.360703214767818]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.325326323509216]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[653.811390025093 436.040514940086 265.192438050706 1064.63014093493 4093.22967580083 4265.56042346926]</SPMvols0>
- <SPMvols1>[585.541918494005 413.977025826099 182.412031318788 1117.16672416675 3649.32021867157 4419.60945505942]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[24825.3359375 49757.16015625 65177.86328125]</T3th>
- <Tth>
- <T3th>[0 921.63671875 534.202880859375 24825.3359375 49757.16015625 65177.86328125 85354.125 113297.703125]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.020451758056879 0.0749960243701935 0.0824663266539574 0 0]</dtc>
- <ll>[0.0799064376727253 0 0.0799064376727253 0;0.183054288609975 0.00992700890475819 0.192981297514733 2116.91479492188;0.183054288609975 0.00992700890475819 0.192981297514733 2116.91479492188]</ll>
- <rmsdtc>[0.0441359020769596 0.0974777638912201 0.108064241707325]</rmsdtc>
- <rmsgdt>[0.0318237952888012 0.0450482852756977 0.0552221946418285]</rmsgdt>
- <rmsdt>0.108064241707325</rmsdt>
- <dt>0.0824663266539574</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00996796041727066 0.0376376062631607 0.0538552217185497 0.0620502419769764 0.0664850175380707 0.0751897022128105]</dtc>
- <ll>[0.0823112224303492 0 0.0823112224303492 0;0.21255057997558 0.014361966765873 0.226912546741453 7351.53173828125;0.18878048181078 0.0169700882740249 0.205750570084805 12213.576171875;0.167816727249711 0.0183300442165799 0.186146771466291 19764.7734375;0.154316302941716 0.0187569079110963 0.173073210852812 32812.453125;0.154316302941716 0.0187569079110963 0.173073210852812 32812.453125]</ll>
- <rmsdtc>[0.0116747887805104 0.0434092618525028 0.0654620677232742 0.0917501598596573 0.114723280072212 0.120079234242439]</rmsdtc>
- <rmsgdt>[0.00349292159080505 0.0139899672940373 0.0301627442240715 0.0506707355380058 0.0687564164400101 0.0725429952144623]</rmsgdt>
- <rmsdt>0.120079234242439</rmsdt>
- <dt>0.0751897022128105</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_12363/ds/sub-015/sub-015_ses-t2_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 9s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 5s</item>
- <item>Estimate background 5s</item>
- <item>Initial correction 5s</item>
- <item>Refine background 2s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>30s</item>
- <item>Correct center-of-mass 7s</item>
- <item>Affine registration 7s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 53s</item>
- <item>SPM preprocessing 1 (estimate 2): 61s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 13s</item>
- <item>Update Segmentation 14s</item>
- <item>Update Skull-Stripping 31s</item>
- <item>Update probability maps 7s</item>
- <item>64s</item>
- <item>Global intensity correction: 12s</item>
- <item>SANLM denoising after intensity normalization (medium): 5s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.19) 11s</item>
- <item>Estimate local tissue thresholds (WM) 13s</item>
- <item>Estimate local tissue thresholds (GM) 16s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 13s</item>
- <item>60s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 9s</item>
- <item>Blood vessel detection 7s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 19s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 3s</item>
- <item>50s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 25s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>9s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0823 0.0000 0.0823 | 32.0000</item>
- <item>2 | 2.50 | 0.0796 0.0012 0.0808 | 29.4886</item>
- <item>3 | 2.50 | 0.0788 0.0019 0.0807 | 26.9772</item>
- <item>4 | 2.50 | 0.0784 0.0021 0.0805 | 24.6107</item>
- <item>5 | 2.50 | 0.0780 0.0023 0.0803 | 22.6548</item>
- <item>6 | 2.50 | 0.0777 0.0024 0.0801 | 20.6989</item>
- <item>7 | 2.50 | 0.0774 0.0025 0.0799 | 18.9688</item>
- <item>8 | 2.50 | 0.0771 0.0026 0.0797 | 17.4455</item>
- <item>9 | 2.50 | 0.0768 0.0027 0.0795 | 15.9223</item>
- <item>10 | 2.50 | 0.0764 0.0028 0.0793 | 14.6627</item>
- <item>11 | 2.50 | 0.0761 0.0029 0.0790 | 13.4764</item>
- <item>12 | 2.50 | 0.0757 0.0030 0.0787 | 12.3015</item>
- <item>13 | 2.50 | 0.0753 0.0031 0.0785 | 11.3776</item>
- <item>14 | 2.50 | 0.0750 0.0032 0.0782 | 10.4537</item>
- <item>15 | 2.25 | 0.0739 0.0033 0.0772 | 9.5920</item>
- <item>16 | 2.25 | 0.0709 0.0048 0.0756 | 8.8725</item>
- <item>29 | 2.00 | 0.0715 0.0022 0.0736 | 3.3283</item>
- <item>30 | 2.00 | 0.0652 0.0046 0.0698 | 3.1221</item>
- <item>31 | 2.00 | 0.0629 0.0057 0.0686 | 2.9160</item>
- <item>43 | 1.75 | 0.0614 0.0033 0.0647 | 1.5785</item>
- <item>44 | 1.75 | 0.0573 0.0054 0.0627 | 1.5194</item>
- <item>45 | 1.75 | 0.0559 0.0061 0.0620 | 1.4626</item>
- <item>57 | 1.50 | 0.0542 0.0045 0.0587 | 1.0900</item>
- <item>58 | 1.50 | 0.0514 0.0063 0.0577 | 1.0730</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 119s</item>
- <item>Prepare output 8s</item>
- <item>127s</item>
- <item>Jacobian determinant (RMS): 0.012 0.043 0.065 0.092 0.115 | 0.120079</item>
- <item>Template Matching: 0.082 0.213 0.189 0.168 0.154 | 0.154316</item>
- <item>Write result maps: 18s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 26s</item>
- <item>CSF distance: 10s</item>
- <item>PBT2x thickness: 29s</item>
- <item>69s</item>
- <item>Create initial surface 60s</item>
- <item>Topology correction: 56s</item>
- <item>Surface refinement: 49s</item>
- <item>Reduction of surface collisions with optimization: 39s</item>
- <item>Spherical mapping with areal smoothing 52s</item>
- <item>Spherical registration 246s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 25s</item>
- <item>CSF distance: 10s</item>
- <item>PBT2x thickness: 29s</item>
- <item>69s</item>
- <item>Create initial surface 60s</item>
- <item>Topology correction: 55s</item>
- <item>Surface refinement: 63s</item>
- <item>Reduction of surface collisions with optimization: 38s</item>
- <item>Spherical mapping with areal smoothing 52s</item>
- <item>Spherical registration 249s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.3551 0.6046 mm</item>
- <item>Surface intensity / position RMSE: 0.0628 / 0.0651</item>
- <item>Euler number / defect number / defect size: 14.0 / 11.5 / 0.46%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_12363/ds/sub-015/surf/lh.thickness.sub-015_ses-t2_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_12363/ds/sub-015/surf/rh.thickness.sub-015_ses-t2_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_12363/ds/sub-015/sub-015_ses-t2_T1w.nii</item>
- <item>Surface ROI estimation: 6s</item>
- <item>Surface and thickness estimation takes: 1222s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 6s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 21s</item>
- <item>ROI estimation of 'lpba40' atlas 6s</item>
- <item>ROI estimation of 'hammers' atlas 15s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 5s</item>
- <item>ROI estimation of 'aal3' atlas 9s</item>
- <item>ROI estimation of 'mori' atlas 14s</item>
- <item>ROI estimation of 'anatomy3' atlas 20s</item>
- <item>ROI estimation of 'julichbrain' atlas 26s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 19s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 42s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 63s</item>
- <item>Write results 64s</item>
- <item>260s</item>
- <item>Quality check: 4s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_12363/ds/sub-015/report/catreport_sub-015_ses-t2_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 35 minute(s) and 13 second(s).</item>
- <item>Image Quality Rating (IQR): 84.33% (B)</item>
- <item>GM volume (GMV): 43.50% (530.78 / 1220.19 ml)</item>
- <item>GM thickness (GMT): 2.36 0.61 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_12363/ds/sub-015/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_12363/ds/sub-015/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_12363/ds/sub-015/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|