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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- </shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>0</td>
- <td>1</td>
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- <td>HCP</td>
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- <td>1</td>
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- <td>0</td>
- <td>0</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <res_BB>0</res_BB>
- <tissue_mn>[0 8673.494140625 19035.111328125 27316.560546875]</tissue_mn>
- <tissue_mnr>[0 0.317517787218094 0.696834087371826 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[5474.02799985043 3348.71760661668 2732.69179623592 1638.77424668627]</tissue_std>
- <tissue_stdr>[0.200392290949821 0.122589282691479 0.100037917494774 0.059991966933012]</tissue_stdr>
- <contrast>8281.44921875</contrast>
- <contrastr>0.303165882825851</contrastr>
- <NCR>0.14052976667881</NCR>
- <ICR>0.286148458719254</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.00000252938408 2.00000001152148 1.99999996442544]</res_vx_vol>
- <res_RMS>2.00000083511069</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.53584504127502</contrastr>
- <NCR>2.34840321540833</NCR>
- <ICR>1.16951501369476</ICR>
- <SurfaceEulerNumber>1.40816326530612</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12013356174831</SurfaceDefectArea>
- <SurfaceDefectNumber>1.35</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.26461291313171</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.25948143005371</SurfacePositionRMSE>
- <IQR>2.22027313419177</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220713-013736</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>10</SurfaceEulerNumber>
- <SurfaceDefectArea>0.480534246993235</SurfaceDefectArea>
- <SurfaceDefectNumber>7</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0632306486368179</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0629740729928017</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>10</EC_abs>
- <defect_size>0.480534246993235</defect_size>
- <vol_abs_CGW>[241.898808757929 574.128154145924 452.876810173221 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.343094547227342</vol_abs_WMH>
- <vol_rel_WMH>0.000270386576592283</vol_rel_WMH>
- <surf_TSA>1688.10803204045</surf_TSA>
- <vol_TIV>1268.90377307707</vol_TIV>
- <vol_rel_CGW>[0.190636054435655 0.452459962943975 0.35690398262037 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.48427729163228 0.611504198866532]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.4833824634552 0.771362311256809 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.89932846021062 0.257527948478577 0.301493527044746;2.51423489681374 0.172649768749968 0.438390125540669;3.14887937131561 0.281365720502647 0.260116347414586]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.875978328228313 0.288567247892766 0.53294910830796;4.18524042236097 0.384349300900417 0.46705089169204]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.39866047031436</vol_TIV>
- <vol_rel_CGW>[1.27363603512311 5.97593324252829 4.25976980280836 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02703865765923</vol_rel_WMH>
- <surf_TSA>8.48514088288039</surf_TSA>
- <SQR>4.92649199785751</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.614488522376543 3873 1151 3996.98800688265 0.375991721574514]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.32352676987648]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[707.989690378127 406.257481214066 325.907635511952 912.028926242816 3726.09535554885 4748.72193007219]</SPMvols0>
- <SPMvols1>[631.15739417829 380.314750692592 220.736692065283 1221.12301913431 3270.71988734516 4643.97355970364]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[9923.0263671875 20160.369140625 26564.017578125]</T3th>
- <Tth>
- <T3th>[0 0 255.075241088867 9923.0263671875 20160.369140625 26564.017578125 34884.515625 58112.12109375]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0227888505905867 0.0883302018046379 0.0985072776675224 0 0]</dtc>
- <ll>[0.0839420851348352 0 0.0839420851348352 0;0.185512767118566 0.0121491204361383 0.197661887554704 2590.77563476562;0.185512767118566 0.0121491204361383 0.197661887554704 2590.77563476562]</ll>
- <rmsdtc>[0.048012126237154 0.115069441497326 0.1270382553339]</rmsdtc>
- <rmsgdt>[0.0342127345502377 0.0498008355498314 0.0603329874575138]</rmsgdt>
- <rmsdt>0.1270382553339</rmsdt>
- <dt>0.0985072776675224</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0112252458930016 0.0438167676329613 0.0639721602201462 0.072541855275631 0.0778851583600044 0.0883669033646584]</dtc>
- <ll>[0.0855053800210813 0 0.0855053800210813 0;0.21840347985348 0.0164273923992674 0.234830872252747 8408.771484375;0.192055837091781 0.0191615668077127 0.211217403899494 13790.8095703125;0.169812860878331 0.0201450992740004 0.189957960152332 21721.896484375;0.153215163691948 0.0222047473587378 0.175419911050686 38843.94140625;0.153215163691948 0.0222047473587378 0.175419911050686 38843.94140625]</ll>
- <rmsdtc>[0.0129342600703239 0.0496873371303082 0.0754397884011269 0.103183530271053 0.12481577694416 0.131885573267937]</rmsdtc>
- <rmsgdt>[0.00370882241986692 0.0150066576898098 0.0313376821577549 0.0516403988003731 0.067584902048111 0.0724669247865677]</rmsgdt>
- <rmsdt>0.131885573267937</rmsdt>
- <dt>0.0883669033646584</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_19436/ds/sub-009/sub-009_ses-t0_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 18s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 5s</item>
- <item>35s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 70s</item>
- <item>SPM preprocessing 1 (estimate 2): 59s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 15s</item>
- <item>Update Segmentation 17s</item>
- <item>Update Skull-Stripping 39s</item>
- <item>Update probability maps 8s</item>
- <item>79s</item>
- <item>Global intensity correction: 14s</item>
- <item>SANLM denoising after intensity normalization (medium): 17s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.12) 13s</item>
- <item>Estimate local tissue thresholds (WM) 15s</item>
- <item>Estimate local tissue thresholds (GM) 19s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 24s</item>
- <item>80s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 11s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.04) 24s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>62s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 31s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0855 0.0000 0.0855 | 32.0000</item>
- <item>2 | 2.50 | 0.0822 0.0014 0.0836 | 29.4886</item>
- <item>3 | 2.50 | 0.0812 0.0021 0.0833 | 26.9772</item>
- <item>4 | 2.50 | 0.0807 0.0024 0.0831 | 24.6107</item>
- <item>5 | 2.50 | 0.0803 0.0026 0.0829 | 22.6548</item>
- <item>6 | 2.50 | 0.0799 0.0027 0.0827 | 20.6989</item>
- <item>7 | 2.50 | 0.0796 0.0029 0.0824 | 18.9688</item>
- <item>8 | 2.50 | 0.0792 0.0030 0.0822 | 17.4455</item>
- <item>9 | 2.50 | 0.0788 0.0031 0.0819 | 15.9223</item>
- <item>10 | 2.50 | 0.0784 0.0032 0.0816 | 14.6627</item>
- <item>11 | 2.50 | 0.0780 0.0034 0.0813 | 13.4764</item>
- <item>12 | 2.50 | 0.0775 0.0034 0.0810 | 12.3015</item>
- <item>13 | 2.50 | 0.0771 0.0036 0.0807 | 11.3776</item>
- <item>14 | 2.50 | 0.0767 0.0037 0.0803 | 10.4537</item>
- <item>15 | 2.25 | 0.0761 0.0038 0.0799 | 9.5920</item>
- <item>16 | 2.25 | 0.0728 0.0055 0.0783 | 8.8725</item>
- <item>29 | 2.00 | 0.0733 0.0025 0.0758 | 3.3283</item>
- <item>30 | 2.00 | 0.0664 0.0053 0.0717 | 3.1221</item>
- <item>31 | 2.00 | 0.0640 0.0064 0.0704 | 2.9160</item>
- <item>43 | 1.75 | 0.0624 0.0037 0.0661 | 1.5785</item>
- <item>44 | 1.75 | 0.0581 0.0059 0.0640 | 1.5194</item>
- <item>45 | 1.75 | 0.0566 0.0067 0.0633 | 1.4626</item>
- <item>57 | 1.50 | 0.0549 0.0050 0.0599 | 1.0900</item>
- <item>58 | 1.50 | 0.0520 0.0068 0.0588 | 1.0730</item>
- <item>59 | 1.50 | 0.0511 0.0074 0.0585 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 163s</item>
- <item>Prepare output 10s</item>
- <item>173s</item>
- <item>Jacobian determinant (RMS): 0.013 0.050 0.075 0.103 0.125 | 0.131886</item>
- <item>Template Matching: 0.086 0.218 0.192 0.170 0.153 | 0.153215</item>
- <item>Write result maps: 22s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 56s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 38s</item>
- <item>112s</item>
- <item>Create initial surface 77s</item>
- <item>Topology correction: 69s</item>
- <item>Surface refinement: 55s</item>
- <item>Reduction of surface collisions with optimization: 50s</item>
- <item>Spherical mapping with areal smoothing 65s</item>
- <item>Spherical registration 293s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 12s</item>
- <item>PBT2x thickness: 35s</item>
- <item>81s</item>
- <item>Create initial surface 74s</item>
- <item>Topology correction: 68s</item>
- <item>Surface refinement: 65s</item>
- <item>Reduction of surface collisions with optimization: 51s</item>
- <item>Spherical mapping with areal smoothing 66s</item>
- <item>Spherical registration 287s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4845 0.6111 mm</item>
- <item>Surface intensity / position RMSE: 0.0632 / 0.0630</item>
- <item>Euler number / defect number / defect size: 10.0 / 7.0 / 0.48%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19436/ds/sub-009/surf/lh.thickness.sub-009_ses-t0_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_19436/ds/sub-009/surf/rh.thickness.sub-009_ses-t0_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_19436/ds/sub-009/sub-009_ses-t0_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1492s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 25s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 18s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 22s</item>
- <item>ROI estimation of 'julichbrain' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 49s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 82s</item>
- <item>Write results 84s</item>
- <item>306s</item>
- <item>Quality check: 5s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_19436/ds/sub-009/report/catreport_sub-009_ses-t0_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 43 minute(s) and 33 second(s).</item>
- <item>Image Quality Rating (IQR): 82.80% (B-)</item>
- <item>GM volume (GMV): 45.25% (574.13 / 1268.90 ml)</item>
- <item>GM thickness (GMT): 2.48 0.61 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_19436/ds/sub-009/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_19436/ds/sub-009/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_19436/ds/sub-009/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|