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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <species>human</species>
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- <shootingsurf>Template_T1</shootingsurf>
- <pth_templates>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym</pth_templates>
- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
- <cat12atlas>
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- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <fontsize>10</fontsize>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
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- <td>0</td>
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- <td>HCP</td>
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- <td>1</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- <res_BB>0</res_BB>
- <tissue_mn>[0 8262.466796875 18627.724609375 26778.64453125]</tissue_mn>
- <tissue_mnr>[0 0.308546841144562 0.695618629455566 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3033.7388251158 3183.86886943004 2725.57310809179 1543.68653147062]</tissue_std>
- <tissue_stdr>[0.11328948289156 0.118895821273327 0.101781591773033 0.0576461777091026]</tissue_stdr>
- <contrast>8150.919921875</contrast>
- <contrastr>0.304381340742111</contrastr>
- <NCR>0.126832693815231</NCR>
- <ICR>0.27684161067009</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.9999958465959 2.00000000951091 2.00000001144739]</res_vx_vol>
- <res_RMS>1.99999862251903</res_RMS>
- <res_BB>0.5</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.51761317253113</contrastr>
- <NCR>2.15177583694458</NCR>
- <ICR>1.14643251895905</ICR>
- <SurfaceEulerNumber>1.71428571428571</SurfaceEulerNumber>
- <SurfaceDefectArea>1.07672552412998</SurfaceDefectArea>
- <SurfaceDefectNumber>1.65</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.34599387645721</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.33194327354431</SurfacePositionRMSE>
- <IQR>2.08547327697284</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>1980</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20220713-040605</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>16</SurfaceEulerNumber>
- <SurfaceDefectArea>0.306902096519929</SurfaceDefectArea>
- <SurfaceDefectNumber>13</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0672996938228607</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0665971636772156</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>16</EC_abs>
- <defect_size>0.306902096519929</defect_size>
- <vol_abs_CGW>[239.255642921047 560.379167672597 449.879443038491 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.569947842020096</vol_abs_WMH>
- <vol_rel_WMH>0.000456135526556299</vol_rel_WMH>
- <surf_TSA>1613.66673091665</surf_TSA>
- <vol_TIV>1249.51425363214</vol_TIV>
- <vol_rel_CGW>[0.191478922489736 0.448477611234658 0.360043466275606 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.48332694491645 0.623942225341429]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.50439190864563 0.725577119689778 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.85887888735715 0.250876234310561 0.280728647908367;2.50798753014196 0.178376205494193 0.430045443227092;3.1350011522646 0.260743795100631 0.289225908864542]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.859416583163234 0.281853115257756 0.565033141366946;4.05973695827192 0.328419245202594 0.434966858633054]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.52089123963619</vol_TIV>
- <vol_rel_CGW>[1.28877375161163 5.90441112131211 4.31615420753603 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04561355265563</vol_rel_WMH>
- <surf_TSA>8.32969473370367</surf_TSA>
- <SQR>4.8759680100927</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0.673718942901235 1855 725 3382.87501021167 0.381859964374278]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0 0 0.0806930586695671]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[659.702527163261 412.1109171517 328.602297534709 520.648685055156 2589.05656831319 6331.82785093816]</SPMvols0>
- <SPMvols1>[593.404405320434 388.950133632398 226.531728033871 437.358398320393 1227.35612686474 7494.39077441934]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[8668.3837890625 19858.015625 26043.21484375]</T3th>
- <Tth>
- <T3th>[0 0 166.956878662109 8668.3837890625 19858.015625 26043.21484375 34730.6328125 49310.05859375]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.020165991038084 0.0724483802914619 0.0796306952834129 0 0]</dtc>
- <ll>[0.081318959468553 0 0.081318959468553 0;0.187061946360575 0.0105318410628412 0.197593787423417 2245.89404296875;0.187061946360575 0.0105318410628412 0.197593787423417 2245.89404296875]</ll>
- <rmsdtc>[0.0444754660129547 0.0951228216290474 0.10547287017107]</rmsdtc>
- <rmsgdt>[0.0320980548858643 0.0451218970119953 0.0554995238780975]</rmsgdt>
- <rmsdt>0.10547287017107</rmsdt>
- <dt>0.0796306952834129</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00938315317034721 0.0348438657820225 0.0498588718473911 0.0575036704540253 0.0627263113856316 0.0706457272171974]</dtc>
- <ll>[0.0819810270181673 0 0.0819810270181673 0;0.212699664224664 0.0141523695054945 0.226852033730159 7244.244140625;0.188683850276222 0.0173737789386588 0.20605762921488 12504.1171875;0.167580585534077 0.0189428809474789 0.186523466481556 20425.578125;0.151445027104307 0.0211332954240796 0.172578322528386 36969.59375;0.151445027104307 0.0211332954240796 0.172578322528386 36969.59375]</ll>
- <rmsdtc>[0.0110338106751442 0.0409365855157375 0.0618778988718987 0.0864511504769325 0.108036734163761 0.115266628563404]</rmsdtc>
- <rmsgdt>[0.00335281807929277 0.0134625481441617 0.0291511788964272 0.0487136505544186 0.0652259886264801 0.0707441717386246]</rmsgdt>
- <rmsdt>0.115266628563404</rmsdt>
- <dt>0.0706457272171974</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r1980: 1/1: ./dir_4168/ds/sub-002/sub-002_ses-t0_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 7s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 4s</item>
- <item>Estimate background 3s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 3s</item>
- <item>23s</item>
- <item>Correct center-of-mass 2s</item>
- <item>Affine registration 5s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 3s</item>
- <item>Use initial fine affine registration. 40s</item>
- <item>SPM preprocessing 1 (estimate 2): 45s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 10s</item>
- <item>Update Segmentation 11s</item>
- <item>Update Skull-Stripping 26s</item>
- <item>Update probability maps 6s</item>
- <item>53s</item>
- <item>Global intensity correction: 10s</item>
- <item>SANLM denoising after intensity normalization (medium): 4s</item>
- <item>Fast Optimized Shooting registration 24s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 2s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.14) 8s</item>
- <item>Estimate local tissue thresholds (WM) 10s</item>
- <item>Estimate local tissue thresholds (GM) 13s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 8s</item>
- <item>46s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 6s</item>
- <item>Blood vessel detection 5s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 14s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>39s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 17s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 2s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>7s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0820 0.0000 0.0820 | 32.0000</item>
- <item>2 | 2.50 | 0.0793 0.0012 0.0805 | 29.4886</item>
- <item>3 | 2.50 | 0.0785 0.0018 0.0803 | 26.9772</item>
- <item>4 | 2.50 | 0.0780 0.0021 0.0801 | 24.6107</item>
- <item>5 | 2.50 | 0.0777 0.0023 0.0799 | 22.6548</item>
- <item>6 | 2.50 | 0.0774 0.0024 0.0797 | 20.6989</item>
- <item>7 | 2.50 | 0.0771 0.0025 0.0796 | 18.9688</item>
- <item>8 | 2.50 | 0.0768 0.0026 0.0794 | 17.4455</item>
- <item>9 | 2.50 | 0.0764 0.0027 0.0791 | 15.9223</item>
- <item>10 | 2.50 | 0.0761 0.0028 0.0789 | 14.6627</item>
- <item>11 | 2.50 | 0.0758 0.0029 0.0787 | 13.4764</item>
- <item>12 | 2.50 | 0.0754 0.0030 0.0784 | 12.3015</item>
- <item>13 | 2.50 | 0.0751 0.0031 0.0781 | 11.3776</item>
- <item>14 | 2.50 | 0.0747 0.0032 0.0779 | 10.4537</item>
- <item>15 | 2.25 | 0.0738 0.0033 0.0771 | 9.5920</item>
- <item>16 | 2.25 | 0.0709 0.0047 0.0756 | 8.8725</item>
- <item>29 | 2.00 | 0.0718 0.0021 0.0739 | 3.3283</item>
- <item>30 | 2.00 | 0.0652 0.0047 0.0699 | 3.1221</item>
- <item>31 | 2.00 | 0.0629 0.0058 0.0687 | 2.9160</item>
- <item>43 | 1.75 | 0.0615 0.0034 0.0649 | 1.5785</item>
- <item>44 | 1.75 | 0.0573 0.0055 0.0628 | 1.5194</item>
- <item>45 | 1.75 | 0.0559 0.0063 0.0622 | 1.4626</item>
- <item>57 | 1.50 | 0.0542 0.0046 0.0588 | 1.0900</item>
- <item>58 | 1.50 | 0.0514 0.0065 0.0578 | 1.0730</item>
- <item>59 | 1.50 | 0.0505 0.0070 0.0575 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 124s</item>
- <item>Prepare output 6s</item>
- <item>130s</item>
- <item>Jacobian determinant (RMS): 0.011 0.041 0.062 0.086 0.108 | 0.115267</item>
- <item>Template Matching: 0.082 0.213 0.189 0.168 0.151 | 0.151445</item>
- <item>Write result maps: 17s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 29s</item>
- <item>CSF distance: 9s</item>
- <item>PBT2x thickness: 27s</item>
- <item>68s</item>
- <item>Create initial surface 44s</item>
- <item>Topology correction: 44s</item>
- <item>Surface refinement: 38s</item>
- <item>Reduction of surface collisions with optimization: 30s</item>
- <item>Spherical mapping with areal smoothing 43s</item>
- <item>Spherical registration 173s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 9s</item>
- <item>PBT2x thickness: 27s</item>
- <item>67s</item>
- <item>Create initial surface 43s</item>
- <item>Topology correction: 43s</item>
- <item>Surface refinement: 49s</item>
- <item>Reduction of surface collisions with optimization: 29s</item>
- <item>Spherical mapping with areal smoothing 44s</item>
- <item>Spherical registration 168s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4833 0.6239 mm</item>
- <item>Surface intensity / position RMSE: 0.0673 / 0.0666</item>
- <item>Euler number / defect number / defect size: 16.0 / 13.0 / 0.31%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_4168/ds/sub-002/surf/lh.thickness.sub-002_ses-t0_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_4168/ds/sub-002/surf/rh.thickness.sub-002_ses-t0_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_4168/ds/sub-002/sub-002_ses-t0_T1w.nii</item>
- <item>Surface ROI estimation: 5s</item>
- <item>Surface and thickness estimation takes: 935s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 9s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 35s</item>
- <item>ROI estimation of 'lpba40' atlas 10s</item>
- <item>ROI estimation of 'hammers' atlas 24s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 19s</item>
- <item>ROI estimation of 'anatomy3' atlas 27s</item>
- <item>ROI estimation of 'julichbrain' atlas 36s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 57s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 86s</item>
- <item>Write results 86s</item>
- <item>353s</item>
- <item>Quality check: 3s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_4168/ds/sub-002/report/catreport_sub-002_ses-t0_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 30 minute(s) and 10 second(s).</item>
- <item>Image Quality Rating (IQR): 84.15% (B)</item>
- <item>GM volume (GMV): 44.85% (560.38 / 1249.51 ml)</item>
- <item>GM thickness (GMT): 2.48 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_4168/ds/sub-002/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_4168/ds/sub-002/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_4168/ds/sub-002/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|