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- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_2196572/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
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- <ON>11</ON>
- <MB>13</MB>
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- <VT>15</VT>
- <NV>17</NV>
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- <HI>23</HI>
- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>0.671605586993989</SurfaceDefectArea>
- <SurfaceDefectNumber>17</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0686403587460518</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0704089254140854</SurfacePositionRMSE>
- <res_vx_vol>[0.999999989767493 0.999999989767493 1]</res_vx_vol>
- <res_vx_voli>[0.99999999073296 0.99999999073296 1]</res_vx_voli>
- <res_RMS>0.999999993178329</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[4.60799980163574 123.026000976562 282.101989746094 404.821990966797]</tissue_mn>
- <tissue_mnr>[0.0113827800378203 0.303901463747025 0.696854412555695 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[7.61872383024892 50.3473655658507 38.1712875294358 23.7970891600495]</tissue_std>
- <tissue_stdr>[0.0190366245806217 0.125801116228104 0.095377191901207 0.0594609118998051]</tissue_stdr>
- <contrast>124.132987976074</contrast>
- <contrastr>0.306635975837708</contrastr>
- <res_ECR>0.331269085407257</res_ECR>
- <NCR>0.143114909529686</NCR>
- <ICR>0.281637758016586</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999997953499 1.99999997953499 2]</res_vx_vol>
- <res_RMS>1.99999998635666</res_RMS>
- <res_ECR>2.58810758590698</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.48379373550415</contrastr>
- <NCR>2.38551425933838</NCR>
- <ICR>1.15832781791687</ICR>
- <SurfaceEulerNumber>2.02040816326531</SurfaceEulerNumber>
- <SurfaceDefectArea>1.1679013967485</SurfaceDefectArea>
- <SurfaceDefectNumber>1.85</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.37280714511871</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.40817856788635</SurfacePositionRMSE>
- <SIQR>2.40140714874456</SIQR>
- <IQR>2.24807383921018</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-015629</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>0.671605586993989</SurfaceDefectArea>
- <SurfaceDefectNumber>17</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0686403587460518</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0704089254140854</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>22</EC_abs>
- <defect_size>0.671605586993989</defect_size>
- <vol_abs_CGW>[247.252136593879 653.085085934884 488.103351737767 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.391858816266669</vol_abs_WMH>
- <vol_rel_WMH>0.000282229447575512</vol_rel_WMH>
- <surf_TSA>1825.44017719716</surf_TSA>
- <vol_TIV>1388.44057426653</vol_TIV>
- <vol_rel_CGW>[0.17807901985614 0.470373091970384 0.351547888173476 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.56232416396274 0.632479228403774]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.57117199897766 0.744071316727835 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.93449572243011 0.248659023297166 0.293313325572475;2.58740683509431 0.182047006275929 0.422518151659725;3.23726140929288 0.269003313744039 0.2841685227678]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.903811826148368 0.324802509280772 0.533286963434022;4.16895921295796 0.330852492614967 0.466713036565978]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00318283963723</vol_TIV>
- <vol_rel_CGW>[1.04811458074964 6.29764892188191 4.16357557782823 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02822294475755</vol_rel_WMH>
- <surf_TSA>8.59569032433938</surf_TSA>
- <SQR>5.17313055794907</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.3357639497 0.375509008162965]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00163056491874158 0.00142480642534792 0.0285558495670557]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[782.908754116957 440.512827129617 406.712412069802 416.982576585337 748.853374355985 9186.85163757328]</SPMvols0>
- <SPMvols1>[686.53253237379 412.999023717992 250.673575746152 366.46528732555 650.768164409198 9167.10459480202]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[145.080795288086 297.6748046875 391.9794921875]</T3th>
- <Tth>
- <T3th>[-5.35720014572144 -5.35720443725586 3.08620262145996 145.080795288086 297.6748046875 391.9794921875 515.428833007812 1058.33435058594]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0188988074660301 0.0632367208600044 0.0688205286860466 0 0]</dtc>
- <ll>[0.0815776566974446 0 0.0815776566974446 0;0.192628784912402 0.00948166875850682 0.202110453670909 2021.94689941406;0.192628784912402 0.00948166875850682 0.202110453670909 2021.94689941406]</ll>
- <rmsdtc>[0.0429528541862965 0.0821705833077431 0.0921226367354393]</rmsdtc>
- <rmsgdt>[0.0310553107410669 0.0413743257522583 0.0515776090323925]</rmsgdt>
- <rmsdt>0.0921226367354393</rmsdt>
- <dt>0.0688205286860466</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00806620623916388 0.0283280517905951 0.0392691232264042 0.0470237508416176 0.0532044321298599 0.0594509169459343]</dtc>
- <ll>[0.0829540539589095 0 0.0829540539589095 0;0.215942979242979 0.012881259539072 0.228824238782051 6593.5947265625;0.196248616634154 0.0160404181746483 0.212289034808802 11544.4814453125;0.17585702227731 0.0184706953289615 0.194327717606272 19916.43359375;0.159129314523712 0.0213532003868001 0.180482514910513 37354.28515625;0.159129314523712 0.0213532003868001 0.180482514910513 37354.28515625]</ll>
- <rmsdtc>[0.00936204381287098 0.0328079089522362 0.0491430722177029 0.0727603882551193 0.0971822217106819 0.104909136891365]</rmsdtc>
- <rmsgdt>[0.00317259947769344 0.0120169566944242 0.0271605178713799 0.0479246601462364 0.0663924142718315 0.0722491815686226]</rmsgdt>
- <rmsdt>0.104909136891365</rmsdt>
- <dt>0.0594509169459343</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025860/ses-1/sub-0025860_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 36s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 5s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>29s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 7s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 6s</item>
- <item>Use initial fine affine registration. 4s</item>
- <item>Use previous fine affine registration. 42s</item>
- <item>SPM preprocessing 1 (estimate 2): 47s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 13s</item>
- <item>Update Segmentation 15s</item>
- <item>Update Skull-Stripping 32s</item>
- <item>Update probability maps 8s</item>
- <item>68s</item>
- <item>Global intensity correction: 13s</item>
- <item>SANLM denoising after intensity normalization (medium): 19s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.01) 10s</item>
- <item>Estimate local tissue thresholds (WM) 14s</item>
- <item>Estimate local tissue thresholds (GM) 20s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 35s</item>
- <item>85s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 9s</item>
- <item>Blood vessel detection 7s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.02) 15s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 4s</item>
- <item>45s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 25s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.07,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>8s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0830 0.0000 0.0830 | 32.0000</item>
- <item>2 | 2.50 | 0.0800 0.0013 0.0812 | 29.4886</item>
- <item>3 | 2.50 | 0.0791 0.0019 0.0810 | 26.9772</item>
- <item>4 | 2.50 | 0.0787 0.0021 0.0808 | 24.6107</item>
- <item>5 | 2.50 | 0.0784 0.0022 0.0806 | 22.6548</item>
- <item>6 | 2.50 | 0.0781 0.0023 0.0804 | 20.6989</item>
- <item>7 | 2.50 | 0.0778 0.0024 0.0802 | 18.9688</item>
- <item>8 | 2.50 | 0.0775 0.0025 0.0800 | 17.4455</item>
- <item>9 | 2.50 | 0.0772 0.0025 0.0798 | 15.9223</item>
- <item>10 | 2.50 | 0.0769 0.0026 0.0795 | 14.6627</item>
- <item>11 | 2.50 | 0.0766 0.0027 0.0793 | 13.4764</item>
- <item>12 | 2.50 | 0.0763 0.0027 0.0790 | 12.3015</item>
- <item>13 | 2.50 | 0.0760 0.0028 0.0788 | 11.3776</item>
- <item>14 | 2.50 | 0.0757 0.0029 0.0786 | 10.4537</item>
- <item>15 | 2.25 | 0.0748 0.0029 0.0778 | 9.5920</item>
- <item>16 | 2.25 | 0.0720 0.0043 0.0763 | 8.8725</item>
- <item>29 | 2.00 | 0.0737 0.0019 0.0756 | 3.3283</item>
- <item>30 | 2.00 | 0.0675 0.0044 0.0719 | 3.1221</item>
- <item>31 | 2.00 | 0.0654 0.0053 0.0708 | 2.9160</item>
- <item>43 | 1.75 | 0.0644 0.0031 0.0675 | 1.5785</item>
- <item>44 | 1.75 | 0.0601 0.0054 0.0654 | 1.5194</item>
- <item>45 | 1.75 | 0.0586 0.0062 0.0648 | 1.4626</item>
- <item>57 | 1.50 | 0.0571 0.0045 0.0616 | 1.0900</item>
- <item>58 | 1.50 | 0.0541 0.0065 0.0605 | 1.0730</item>
- <item>59 | 1.50 | 0.0530 0.0071 0.0602 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 146s</item>
- <item>Prepare output 8s</item>
- <item>153s</item>
- <item>Jacobian determinant (RMS): 0.009 0.033 0.049 0.073 0.097 | 0.104909</item>
- <item>Template Matching: 0.083 0.216 0.196 0.176 0.159 | 0.159129</item>
- <item>Write result maps: 39s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 29s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 31s</item>
- <item>75s</item>
- <item>Create initial surface 57s</item>
- <item>Topology correction: 69s</item>
- <item>Surface refinement: 70s</item>
- <item>Reduction of surface collisions with optimization: 47s</item>
- <item>Spherical mapping with areal smoothing 61s</item>
- <item>Spherical registration 208s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 24s</item>
- <item>CSF distance: 10s</item>
- <item>PBT2x thickness: 30s</item>
- <item>69s</item>
- <item>Create initial surface 55s</item>
- <item>Topology correction: 67s</item>
- <item>Surface refinement: 65s</item>
- <item>Reduction of surface collisions with optimization: 46s</item>
- <item>Spherical mapping with areal smoothing 65s</item>
- <item>Spherical registration 212s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5624 0.6312 mm</item>
- <item>Surface intensity / position RMSE: 0.0686 / 0.0704</item>
- <item>Euler number / defect number / defect size: 22.0 / 17.0 / 0.67%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2196572/ds/SWU_4/sub-0025860/ses-1/surf/lh.thickness.sub-0025860_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2196572/ds/SWU_4/sub-0025860/ses-1/surf/rh.thickness.sub-0025860_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2196572/ds/SWU_4/sub-0025860/ses-1/sub-0025860_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1237s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 8s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 29s</item>
- <item>ROI estimation of 'lpba40' atlas 8s</item>
- <item>ROI estimation of 'hammers' atlas 21s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 7s</item>
- <item>ROI estimation of 'aal3' atlas 12s</item>
- <item>ROI estimation of 'mori' atlas 23s</item>
- <item>ROI estimation of 'anatomy3' atlas 43s</item>
- <item>ROI estimation of 'julichbrain' atlas 59s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 25s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 51s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 93s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 125s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 10s</item>
- <item>Write results 11s</item>
- <item>518s</item>
- <item>Quality check: 10s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2196572/ds/SWU_4/sub-0025860/ses-1/report/catreport_sub-0025860_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 42 minute(s) and 35 second(s).</item>
- <item>Image Quality Rating (IQR): 82.52% (B-)</item>
- <item>GM volume (GMV): 47.04% (653.09 / 1388.44 ml)</item>
- <item>GM thickness (GMT): 2.56 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2196572/ds/SWU_4/sub-0025860/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2196572/ds/SWU_4/sub-0025860/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2196572/ds/SWU_4/sub-0025860/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|