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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_3441304/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- </satlas>
- <LAB>
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- <CT>1</CT>
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- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>30</SurfaceEulerNumber>
- <SurfaceDefectArea>0.863168365114075</SurfaceDefectArea>
- <SurfaceDefectNumber>14</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0665262937545776</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0675977915525436</SurfacePositionRMSE>
- <res_vx_vol>[1 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1</res_RMS>
- <res_BB>210.136138916016</res_BB>
- <tissue_mn>[5.10300016403198 124.512001037598 308.440002441406 452.524993896484]</tissue_mn>
- <tissue_mnr>[0.011276725679636 0.275149434804916 0.681597709655762 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[5.93355481482588 49.9639840948112 44.2714157492187 28.0167441469081]</tissue_std>
- <tissue_stdr>[0.0132616516202688 0.111670829355717 0.098947785794735 0.0626181662082672]</tissue_stdr>
- <contrast>145.728332519531</contrast>
- <contrastr>0.322033762931824</contrastr>
- <res_ECR>0.345498859882355</res_ECR>
- <NCR>0.154233798384666</NCR>
- <ICR>0.377262443304062</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_ECR>2.6607084274292</res_ECR>
- <res_BB>10.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.25282692909241</contrastr>
- <NCR>2.54513072967529</NCR>
- <ICR>1.39549219608307</ICR>
- <SurfaceEulerNumber>2.42857142857143</SurfaceEulerNumber>
- <SurfaceDefectArea>1.21579209127852</SurfaceDefectArea>
- <SurfaceDefectNumber>1.7</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.33052587509155</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.35195589065552</SurfacePositionRMSE>
- <SIQR>2.49662575328036</SIQR>
- <IQR>2.3738370836291</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-015919</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>30</SurfaceEulerNumber>
- <SurfaceDefectArea>0.863168365114075</SurfaceDefectArea>
- <SurfaceDefectNumber>14</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0665262937545776</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0675977915525436</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>30</EC_abs>
- <defect_size>0.863168365114075</defect_size>
- <vol_abs_CGW>[311.185952941176 796.34508627451 631.761137254902 0 0]</vol_abs_CGW>
- <vol_abs_WMH>1.44907450980392</vol_abs_WMH>
- <vol_rel_WMH>0.000833140359858582</vol_rel_WMH>
- <surf_TSA>2252.13590433046</surf_TSA>
- <vol_TIV>1739.29217647059</vol_TIV>
- <vol_rel_CGW>[0.178915283556695 0.457855843341095 0.36322887310221 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.46924973459696 0.592929731566635]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.45880722999573 0.678113547411547 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.88516953168783 0.232493937393832 0.304116185407404;2.48531709320845 0.169452153958578 0.42978352974882;3.10992243761695 0.250480770731266 0.266100284843777]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.954404758484351 0.321966310826484 0.482481099097634;4.01142469277893 0.368054296509913 0.517518900902366]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>3.30357213600434</vol_TIV>
- <vol_rel_CGW>[1.06313368456708 6.07284201402829 4.3733633818644 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.08331403598586</vol_rel_WMH>
- <surf_TSA>8.62396274526993</surf_TSA>
- <SQR>5.00970815260848</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336 0.370576677926096]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00164419249631464 0.00130494404584169 0.343108415603638]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[959.441717647059 559.375211764706 628.359090196078 512.604270588235 1119.01640392157 8377.65748235294]</SPMvols0>
- <SPMvols1>[807.561658823529 524.949254901961 368.175662745098 414.169541176471 972.642733333333 8446.87585882353]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[166.476104736328 329.391693115234 446.248291015625]</T3th>
- <Tth>
- <T3th>[-6.96892023086548 31.0861511230469 4.18683862686157 166.476104736328 329.391693115234 446.248291015625 586.134399414062 1167.38073730469]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0176202282309532 0.0645434036850929 0.0706318467855453 0 0]</dtc>
- <ll>[0.083854849312772 0 0.083854849312772 0;0.205183617636508 0.00942619708405823 0.214609814720566 2010.11767578125;0.205183617636508 0.00942619708405823 0.214609814720566 2010.11767578125]</ll>
- <rmsdtc>[0.0411999747157097 0.0861977338790894 0.0963553115725517]</rmsdtc>
- <rmsgdt>[0.0301435738801956 0.0424066595733166 0.0528277643024921]</rmsgdt>
- <rmsdt>0.0963553115725517</rmsdt>
- <dt>0.0706318467855453</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00728364381939173 0.0272495672106743 0.0368170477449894 0.0448024086654186 0.0514784380793571 0.057294175028801]</dtc>
- <ll>[0.0836011656542551 0 0.0836011656542551 0;0.223025320512821 0.0126573050213675 0.235682625534188 6478.9580078125;0.20721055349223 0.0154438823598016 0.222654435852032 11115.1474609375;0.187162277931728 0.0183037253413332 0.205466003273061 19736.39453125;0.169987811207915 0.0218316562966422 0.191819467504557 38191.2734375;0.169987811207915 0.0218316562966422 0.191819467504557 38191.2734375]</ll>
- <rmsdtc>[0.00869916006922722 0.031032856553793 0.0482580848038197 0.071362592279911 0.0963776633143425 0.103395208716393]</rmsdtc>
- <rmsgdt>[0.0029502660036087 0.0114510618150234 0.0264470763504505 0.0472439900040627 0.0676275342702866 0.0726636424660683]</rmsgdt>
- <rmsdt>0.103395208716393</rmsdt>
- <dt>0.057294175028801</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025834/ses-2/sub-0025834_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 37s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 5s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 5s</item>
- <item>Refine background 2s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>29s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 6s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 60s</item>
- <item>SPM preprocessing 1 (estimate 2): 42s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 14s</item>
- <item>Update Segmentation 16s</item>
- <item>Update Skull-Stripping 33s</item>
- <item>Update probability maps 7s</item>
- <item>71s</item>
- <item>Global intensity correction: 12s</item>
- <item>SANLM denoising after intensity normalization (medium): 23s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.05) 12s</item>
- <item>Estimate local tissue thresholds (WM) 15s</item>
- <item>Estimate local tissue thresholds (GM) 22s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 37s</item>
- <item>93s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 10s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 18s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>53s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 28s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>10s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0836 0.0000 0.0836 | 32.0000</item>
- <item>2 | 2.50 | 0.0817 0.0010 0.0827 | 29.4886</item>
- <item>3 | 2.50 | 0.0811 0.0015 0.0826 | 26.9772</item>
- <item>4 | 2.50 | 0.0808 0.0017 0.0825 | 24.6107</item>
- <item>5 | 2.50 | 0.0806 0.0018 0.0824 | 22.6548</item>
- <item>6 | 2.50 | 0.0804 0.0018 0.0822 | 20.6989</item>
- <item>7 | 2.50 | 0.0802 0.0019 0.0821 | 18.9688</item>
- <item>8 | 2.50 | 0.0800 0.0020 0.0820 | 17.4455</item>
- <item>9 | 2.50 | 0.0797 0.0021 0.0818 | 15.9223</item>
- <item>10 | 2.50 | 0.0795 0.0021 0.0816 | 14.6627</item>
- <item>11 | 2.50 | 0.0792 0.0022 0.0814 | 13.4764</item>
- <item>12 | 2.50 | 0.0790 0.0022 0.0812 | 12.3015</item>
- <item>13 | 2.50 | 0.0787 0.0023 0.0811 | 11.3776</item>
- <item>14 | 2.50 | 0.0785 0.0024 0.0808 | 10.4537</item>
- <item>15 | 2.25 | 0.0782 0.0024 0.0806 | 9.5920</item>
- <item>16 | 2.25 | 0.0754 0.0037 0.0792 | 8.8725</item>
- <item>17 | 2.25 | 0.0743 0.0042 0.0786 | 8.1530</item>
- <item>29 | 2.00 | 0.0766 0.0019 0.0785 | 3.3283</item>
- <item>30 | 2.00 | 0.0710 0.0042 0.0752 | 3.1221</item>
- <item>31 | 2.00 | 0.0691 0.0051 0.0742 | 2.9160</item>
- <item>43 | 1.75 | 0.0682 0.0029 0.0712 | 1.5785</item>
- <item>44 | 1.75 | 0.0638 0.0053 0.0691 | 1.5194</item>
- <item>45 | 1.75 | 0.0624 0.0061 0.0685 | 1.4626</item>
- <item>57 | 1.50 | 0.0611 0.0044 0.0655 | 1.0900</item>
- <item>58 | 1.50 | 0.0578 0.0066 0.0643 | 1.0730</item>
- <item>59 | 1.50 | 0.0567 0.0073 0.0639 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 154s</item>
- <item>Prepare output 8s</item>
- <item>162s</item>
- <item>Jacobian determinant (RMS): 0.009 0.031 0.048 0.071 0.096 | 0.103395</item>
- <item>Template Matching: 0.084 0.223 0.207 0.187 0.170 | 0.169988</item>
- <item>Write result maps: 36s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 38s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 38s</item>
- <item>94s</item>
- <item>Create initial surface 68s</item>
- <item>Topology correction: 82s</item>
- <item>Surface refinement: 74s</item>
- <item>Reduction of surface collisions with optimization: 65s</item>
- <item>Spherical mapping with areal smoothing 74s</item>
- <item>Spherical registration 206s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 26s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 38s</item>
- <item>83s</item>
- <item>Create initial surface 68s</item>
- <item>Topology correction: 85s</item>
- <item>Surface refinement: 91s</item>
- <item>Reduction of surface collisions with optimization: 66s</item>
- <item>Spherical mapping with areal smoothing 121s</item>
- <item>Spherical registration 235s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4693 0.5929 mm</item>
- <item>Surface intensity / position RMSE: 0.0665 / 0.0676</item>
- <item>Euler number / defect number / defect size: 30.0 / 14.0 / 0.86%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3441304/ds/SWU_4/sub-0025834/ses-2/surf/lh.thickness.sub-0025834_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3441304/ds/SWU_4/sub-0025834/ses-2/surf/rh.thickness.sub-0025834_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3441304/ds/SWU_4/sub-0025834/ses-2/sub-0025834_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 10s</item>
- <item>Surface and thickness estimation takes: 1503s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 11s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 41s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 27s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 9s</item>
- <item>ROI estimation of 'aal3' atlas 15s</item>
- <item>ROI estimation of 'mori' atlas 23s</item>
- <item>ROI estimation of 'anatomy3' atlas 39s</item>
- <item>ROI estimation of 'julichbrain' atlas 50s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 18s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 34s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 69s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 108s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s</item>
- <item>Write results 9s</item>
- <item>467s</item>
- <item>Quality check: 9s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3441304/ds/SWU_4/sub-0025834/ses-2/report/catreport_sub-0025834_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 45 minute(s) and 47 second(s).</item>
- <item>Image Quality Rating (IQR): 81.26% (B-)</item>
- <item>GM volume (GMV): 45.79% (796.35 / 1739.29 ml)</item>
- <item>GM thickness (GMT): 2.47 0.59 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3441304/ds/SWU_4/sub-0025834/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3441304/ds/SWU_4/sub-0025834/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3441304/ds/SWU_4/sub-0025834/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|