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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_3184568/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <item>gm</item>
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- <td>0</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>66</SurfaceEulerNumber>
- <SurfaceDefectArea>1.98277496413989</SurfaceDefectArea>
- <SurfaceDefectNumber>21.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0753385722637177</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0789961069822311</SurfacePositionRMSE>
- <res_vx_vol>[1 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1</res_RMS>
- <res_BB>192.150161743164</res_BB>
- <tissue_mn>[7.67500019073486 125.668998718262 282.143005371094 405.298004150391]</tissue_mn>
- <tissue_mnr>[0.0189366843551397 0.310065686702728 0.696137189865112 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[6.82344068813904 45.9320113759014 38.2514392756102 25.9430667947024]</tissue_std>
- <tissue_stdr>[0.017160577699542 0.115516483783722 0.0962002649903297 0.0652453824877739]</tissue_stdr>
- <contrast>125.532165527344</contrast>
- <contrastr>0.309728056192398</contrastr>
- <res_ECR>0.378674983978271</res_ECR>
- <NCR>0.16735278069973</NCR>
- <ICR>0.345262497663498</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_ECR>2.82997441291809</res_ECR>
- <res_BB>10.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.43741250038147</contrastr>
- <NCR>2.73345947265625</NCR>
- <ICR>1.31612718105316</ICR>
- <SurfaceEulerNumber>4.26530612244898</SurfaceEulerNumber>
- <SurfaceDefectArea>1.49569374103497</SurfaceDefectArea>
- <SurfaceDefectNumber>2.075</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.50677144527435</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.57992219924927</SurfacePositionRMSE>
- <SIQR>2.65855822067127</SIQR>
- <IQR>2.53144893286512</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-022247</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>66</SurfaceEulerNumber>
- <SurfaceDefectArea>1.98277496413989</SurfaceDefectArea>
- <SurfaceDefectNumber>21.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0753385722637177</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0789961069822311</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>66</EC_abs>
- <defect_size>1.98277496413989</defect_size>
- <vol_abs_CGW>[220.925117647059 758.082066666667 533.361450980392 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.256149019607843</vol_abs_WMH>
- <vol_rel_WMH>0.000169369433899975</vol_rel_WMH>
- <surf_TSA>2064.33331742972</surf_TSA>
- <vol_TIV>1512.36863529412</vol_TIV>
- <vol_rel_CGW>[0.146078880830595 0.501254819080031 0.352666300089374 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.56861041133255 0.65113105252147]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.57645893096924 0.753233478882612 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.90260778186955 0.255568619909666 0.29469793285304;2.58907877674691 0.190712429093952 0.416601921175307;3.26272391347604 0.275084165286768 0.288700145971653]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.914446032148492 0.306044450942708 0.521899120445162;4.22176760389229 0.342788626647386 0.478100879554838]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.29497349799589</vol_TIV>
- <vol_rel_CGW>[0.5 6.85227764152355 4.18366199873157 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.01693694339</vol_rel_WMH>
- <surf_TSA>8.62305355657501</surf_TSA>
- <SQR>5.61696819733109</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336 0.342426468168342]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00864264741539955 0.00145127228461206 0.38763964176178]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[905.270898039216 486.632674509804 468.855941176471 543.038564705882 1464.71540392157 8309.04139215686]</SPMvols0>
- <SPMvols1>[753.125094117647 448.577188235294 264.954411764706 527.328070588235 1322.67757254902 8218.43332941176]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[159.677001953125 300.5498046875 392.458190917969]</T3th>
- <Tth>
- <T3th>[-6.3433198928833 48.2987365722656 8.40867805480957 159.677001953125 300.5498046875 392.458190917969 508.848785400391 1113.48571777344]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0188457611948252 0.0674442648887634 0.0740287527441978 0 0]</dtc>
- <ll>[0.0821876541143801 0 0.0821876541143801 0;0.200225848395999 0.00923792482996617 0.209463773225965 1969.96899414062;0.200225848395999 0.00923792482996617 0.209463773225965 1969.96899414062]</ll>
- <rmsdtc>[0.0393324457108974 0.089369110763073 0.100041724741459]</rmsdtc>
- <rmsgdt>[0.0279055703431368 0.0442437417805195 0.0549929477274418]</rmsgdt>
- <rmsdt>0.100041724741459</rmsdt>
- <dt>0.0740287527441978</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00763176288455725 0.0268120393157005 0.0379239283502102 0.0464321784675121 0.0532902367413044 0.0595144405961037]</dtc>
- <ll>[0.0811806570532847 0 0.0811806570532847 0;0.219335973748474 0.0102736540369353 0.229609627785409 5258.82666015625;0.202465578245187 0.0142464673586448 0.216712045603832 10253.353515625;0.182511216441677 0.0175989681725715 0.200110184614249 18976.474609375;0.165770502008457 0.0210336447425134 0.18680414675097 36795.26953125;0.165770502008457 0.0210336447425134 0.18680414675097 36795.26953125]</ll>
- <rmsdtc>[0.00899745617061853 0.0318003743886948 0.0485966615378857 0.0732329711318016 0.0993922799825668 0.106831640005112]</rmsdtc>
- <rmsgdt>[0.00302887172438204 0.0118010947480798 0.0272159799933434 0.0489134266972542 0.0685824975371361 0.0743911415338516]</rmsgdt>
- <rmsdt>0.106831640005112</rmsdt>
- <dt>0.0595144405961037</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025828/ses-1/sub-0025828_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 71s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 6s</item>
- <item>39s</item>
- <item>Correct center-of-mass 6s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 66s</item>
- <item>SPM preprocessing 1 (estimate 2): 62s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 16s</item>
- <item>Update Segmentation 19s</item>
- <item>Update Skull-Stripping 43s</item>
- <item>Update probability maps 9s</item>
- <item>87s</item>
- <item>Global intensity correction: 16s</item>
- <item>SANLM denoising after intensity normalization (medium): 27s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.04) 15s</item>
- <item>Estimate local tissue thresholds (WM) 18s</item>
- <item>Estimate local tissue thresholds (GM) 27s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 47s</item>
- <item>117s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 13s</item>
- <item>Blood vessel detection 10s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 28s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 4s</item>
- <item>72s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 36s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0812 0.0000 0.0812 | 32.0000</item>
- <item>2 | 2.50 | 0.0795 0.0009 0.0804 | 29.4886</item>
- <item>3 | 2.50 | 0.0790 0.0014 0.0804 | 26.9772</item>
- <item>4 | 2.50 | 0.0787 0.0015 0.0803 | 24.6107</item>
- <item>5 | 2.50 | 0.0785 0.0016 0.0802 | 22.6548</item>
- <item>6 | 2.50 | 0.0783 0.0017 0.0800 | 20.6989</item>
- <item>7 | 2.50 | 0.0781 0.0018 0.0799 | 18.9688</item>
- <item>8 | 2.50 | 0.0779 0.0018 0.0798 | 17.4455</item>
- <item>9 | 2.50 | 0.0777 0.0019 0.0796 | 15.9223</item>
- <item>10 | 2.50 | 0.0775 0.0020 0.0795 | 14.6627</item>
- <item>11 | 2.50 | 0.0773 0.0020 0.0793 | 13.4764</item>
- <item>12 | 2.50 | 0.0771 0.0021 0.0791 | 12.3015</item>
- <item>13 | 2.50 | 0.0768 0.0021 0.0790 | 11.3776</item>
- <item>14 | 2.50 | 0.0766 0.0022 0.0788 | 10.4537</item>
- <item>15 | 2.25 | 0.0756 0.0022 0.0778 | 9.5920</item>
- <item>16 | 2.25 | 0.0731 0.0034 0.0765 | 8.8725</item>
- <item>29 | 2.00 | 0.0749 0.0015 0.0764 | 3.3283</item>
- <item>30 | 2.00 | 0.0693 0.0038 0.0731 | 3.1221</item>
- <item>31 | 2.00 | 0.0675 0.0047 0.0722 | 2.9160</item>
- <item>43 | 1.75 | 0.0667 0.0027 0.0694 | 1.5785</item>
- <item>44 | 1.75 | 0.0623 0.0050 0.0673 | 1.5194</item>
- <item>45 | 1.75 | 0.0608 0.0059 0.0667 | 1.4626</item>
- <item>57 | 1.50 | 0.0595 0.0042 0.0637 | 1.0900</item>
- <item>58 | 1.50 | 0.0563 0.0063 0.0627 | 1.0730</item>
- <item>59 | 1.50 | 0.0553 0.0070 0.0623 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 165s</item>
- <item>Prepare output 10s</item>
- <item>175s</item>
- <item>Jacobian determinant (RMS): 0.009 0.032 0.049 0.073 0.099 | 0.106832</item>
- <item>Template Matching: 0.081 0.219 0.202 0.183 0.166 | 0.165771</item>
- <item>Write result maps: 34s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 35s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 47s</item>
- <item>103s</item>
- <item>Create initial surface 88s</item>
- <item>Topology correction: 102s</item>
- <item>Surface refinement: 84s</item>
- <item>Reduction of surface collisions with optimization: 81s</item>
- <item>Spherical mapping with areal smoothing 89s</item>
- <item>Spherical registration 322s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 32s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 45s</item>
- <item>99s</item>
- <item>Create initial surface 87s</item>
- <item>Topology correction: 99s</item>
- <item>Surface refinement: 85s</item>
- <item>Reduction of surface collisions with optimization: 78s</item>
- <item>Spherical mapping with areal smoothing 102s</item>
- <item>Spherical registration 308s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5687 0.6508 mm</item>
- <item>Surface intensity / position RMSE: 0.0753 / 0.0790</item>
- <item>Euler number / defect number / defect size: 66.0 / 21.5 / 1.98%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3184568/ds/SWU_4/sub-0025828/ses-1/surf/lh.thickness.sub-0025828_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3184568/ds/SWU_4/sub-0025828/ses-1/surf/rh.thickness.sub-0025828_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3184568/ds/SWU_4/sub-0025828/ses-1/sub-0025828_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1827s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 8s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 28s</item>
- <item>ROI estimation of 'lpba40' atlas 8s</item>
- <item>ROI estimation of 'hammers' atlas 20s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 7s</item>
- <item>ROI estimation of 'aal3' atlas 12s</item>
- <item>ROI estimation of 'mori' atlas 18s</item>
- <item>ROI estimation of 'anatomy3' atlas 27s</item>
- <item>ROI estimation of 'julichbrain' atlas 37s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 60s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 93s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 9s</item>
- <item>Write results 10s</item>
- <item>371s</item>
- <item>Quality check: 12s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3184568/ds/SWU_4/sub-0025828/ses-1/report/catreport_sub-0025828_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 52 minute(s) and 56 second(s).</item>
- <item>Image Quality Rating (IQR): 79.69% (C+)</item>
- <item>GM volume (GMV): 50.13% (758.08 / 1512.37 ml)</item>
- <item>GM thickness (GMT): 2.57 0.65 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3184568/ds/SWU_4/sub-0025828/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3184568/ds/SWU_4/sub-0025828/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3184568/ds/SWU_4/sub-0025828/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|