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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_3719195/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <item>csf</item>
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- <td>Desikan</td>
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- <td>0</td>
- <td>1</td>
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- <tr>
- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
- </tr>
- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
- <BG>5</BG>
- <BV>7</BV>
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- <MB>13</MB>
- <BS>13</BS>
- <VT>15</VT>
- <NV>17</NV>
- <HC>19</HC>
- <HD>21</HD>
- <HI>23</HI>
- <PH>25</PH>
- <LE>27</LE>
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- <LASmyostr>0</LASmyostr>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <qualitymeasures>
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- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12255126483697</SurfaceDefectArea>
- <SurfaceDefectNumber>15</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0684447959065437</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0827742218971252</SurfacePositionRMSE>
- <res_vx_vol>[1.00000002221413 1.00000000039182 1.00000001032621]</res_vx_vol>
- <res_vx_voli>[1.0000000811075 1.00000000065194 1.00000001045591]</res_vx_voli>
- <res_RMS>1.00000001097739</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[4.8439998626709 113.925003051758 266.808990478516 385.2080078125]</tissue_mn>
- <tissue_mnr>[0.0125750238075852 0.295749306678772 0.692636132240295 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[7.46287331176028 45.5668461497239 37.3030869479141 24.2803607368072]</tissue_std>
- <tissue_stdr>[0.0196203459054232 0.119797997176647 0.0980720743536949 0.0638345405459404]</tissue_stdr>
- <contrast>119.906845092773</contrast>
- <contrastr>0.311278164386749</contrastr>
- <res_ECR>0.302901029586792</res_ECR>
- <NCR>0.142270743846893</NCR>
- <ICR>0.293013632297516</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.00000004442826 2.00000000078364 2.00000002065241]</res_vx_vol>
- <res_RMS>2.00000002195477</res_RMS>
- <res_ECR>2.44337248802185</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.41416072845459</contrastr>
- <NCR>2.3733959197998</NCR>
- <ICR>1.18654179573059</ICR>
- <SurfaceEulerNumber>2.3265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.28063781620924</SurfaceDefectArea>
- <SurfaceDefectNumber>1.75</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.36889588832855</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.6554844379425</SurfacePositionRMSE>
- <SIQR>2.32176357820777</SIQR>
- <IQR>2.23892682314552</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-010142</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12255126483697</SurfaceDefectArea>
- <SurfaceDefectNumber>15</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0684447959065437</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0827742218971252</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>28</EC_abs>
- <defect_size>1.12255126483697</defect_size>
- <vol_abs_CGW>[304.388996696785 707.740473107664 446.774684336733 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.221027471362515</vol_abs_WMH>
- <vol_rel_WMH>0.000151502393584332</vol_rel_WMH>
- <surf_TSA>1953.18335586894</surf_TSA>
- <vol_TIV>1458.90415414118</vol_TIV>
- <vol_rel_CGW>[0.208642216716403 0.485117868160634 0.306239915122963 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.55034708456075 0.673933353303817]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.56158471107483 0.836021910714179 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.88012986855304 0.290657734016526 0.283913106645863;2.57563370950719 0.197032152857146 0.431232589429533;3.30036694173234 0.295968315071895 0.284854303924603]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.745745427475818 0.298486304739084 0.6206995963867;4.23716675791222 0.296052741445751 0.3793004036133]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.08221903936213</vol_TIV>
- <vol_rel_CGW>[1.5970225703377 6.56246171265507 3.349854797467 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.01515023935843</vol_rel_WMH>
- <surf_TSA>8.61891703360885</surf_TSA>
- <SQR>5.36964863454778</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.3363798505 0.389928522935387]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00143010192550719 0.00121145695447922 0.0182279124855995]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[808.028152943961 398.205660250081 551.841137162726 392.320436177961 907.496413096853 8968.89523883441]</SPMvols0>
- <SPMvols1>[699.105350742746 372.153316671185 349.205130241285 315.416868301959 757.104544326455 9041.37634355749]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[134.999893188477 284.335296630859 375.273193359375]</T3th>
- <Tth>
- <T3th>[-5.47609996795654 -5.47609519958496 3.00151634216309 134.999893188477 284.335296630859 375.273193359375 495.409851074219 1012.52191162109]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0218591243028641 0.0756331533193588 0.0849350690841675 0 0]</dtc>
- <ll>[0.0895394473707452 0 0.0895394473707452 0;0.213606780602866 0.0117519625953409 0.225358743198207 2506.08251953125;0.213606780602866 0.0117519625953409 0.225358743198207 2506.08251953125]</ll>
- <rmsdtc>[0.0444227457046509 0.105994656682014 0.120027638971806]</rmsdtc>
- <rmsgdt>[0.0311085507273674 0.0527363158762455 0.0651712045073509]</rmsgdt>
- <rmsdt>0.120027638971806</rmsdt>
- <dt>0.0849350690841675</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00924278702586889 0.0342370569705963 0.0437086559832096 0.0530980341136456 0.0609367713332176 0.0684918835759163]</dtc>
- <ll>[0.0863263160105008 0 0.0863263160105008 0;0.224387332112332 0.0149108592796093 0.239298191391941 7632.49609375;0.20951989736867 0.0168374071633862 0.226357304532056 12118.083984375;0.188475562636329 0.0195281290487233 0.208003691685053 21056.634765625;0.17036986317227 0.022854297774663 0.193224160946933 39980.234375;0.17036986317227 0.022854297774663 0.193224160946933 39980.234375]</ll>
- <rmsdtc>[0.0108248703181744 0.0374605469405651 0.0580168031156063 0.084031768143177 0.109644211828709 0.11578942835331]</rmsdtc>
- <rmsgdt>[0.0031223960686475 0.0124014858156443 0.0293580796569586 0.0506413727998734 0.0690798684954643 0.0745939463376999]</rmsgdt>
- <rmsdt>0.11578942835331</rmsdt>
- <dt>0.0684918835759163</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025804/ses-2/sub-0025804_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 35s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 5s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>29s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 7s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 57s</item>
- <item>SPM preprocessing 1 (estimate 2): 44s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 13s</item>
- <item>Update Segmentation 15s</item>
- <item>Update Skull-Stripping 32s</item>
- <item>Update probability maps 7s</item>
- <item>68s</item>
- <item>Global intensity correction: 13s</item>
- <item>SANLM denoising after intensity normalization (medium): 19s</item>
- <item>Fast Optimized Shooting registration 25s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 2s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.08) 10s</item>
- <item>Estimate local tissue thresholds (WM) 14s</item>
- <item>Estimate local tissue thresholds (GM) 20s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 35s</item>
- <item>86s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 10s</item>
- <item>Blood vessel detection 7s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.18) 14s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 4s</item>
- <item>47s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 26s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>8s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0863 0.0000 0.0863 | 32.0000</item>
- <item>2 | 2.50 | 0.0839 0.0012 0.0851 | 29.4886</item>
- <item>3 | 2.50 | 0.0832 0.0017 0.0850 | 26.9772</item>
- <item>4 | 2.50 | 0.0829 0.0019 0.0848 | 24.6107</item>
- <item>5 | 2.50 | 0.0826 0.0021 0.0847 | 22.6548</item>
- <item>6 | 2.50 | 0.0824 0.0021 0.0845 | 20.6989</item>
- <item>7 | 2.50 | 0.0821 0.0022 0.0843 | 18.9688</item>
- <item>8 | 2.50 | 0.0819 0.0023 0.0842 | 17.4455</item>
- <item>9 | 2.50 | 0.0816 0.0024 0.0840 | 15.9223</item>
- <item>10 | 2.50 | 0.0813 0.0025 0.0838 | 14.6627</item>
- <item>11 | 2.50 | 0.0810 0.0025 0.0836 | 13.4764</item>
- <item>12 | 2.50 | 0.0808 0.0026 0.0833 | 12.3015</item>
- <item>13 | 2.50 | 0.0804 0.0027 0.0831 | 11.3776</item>
- <item>14 | 2.50 | 0.0802 0.0027 0.0829 | 10.4537</item>
- <item>15 | 2.25 | 0.0798 0.0028 0.0826 | 9.5920</item>
- <item>16 | 2.25 | 0.0768 0.0042 0.0810 | 8.8725</item>
- <item>17 | 2.25 | 0.0756 0.0047 0.0803 | 8.1530</item>
- <item>18 | 2.25 | 0.0748 0.0050 0.0798 | 7.5234</item>
- <item>29 | 2.00 | 0.0771 0.0024 0.0794 | 3.3283</item>
- <item>30 | 2.00 | 0.0717 0.0047 0.0764 | 3.1221</item>
- <item>31 | 2.00 | 0.0698 0.0056 0.0755 | 2.9160</item>
- <item>43 | 1.75 | 0.0690 0.0032 0.0722 | 1.5785</item>
- <item>44 | 1.75 | 0.0644 0.0057 0.0700 | 1.5194</item>
- <item>45 | 1.75 | 0.0628 0.0065 0.0693 | 1.4626</item>
- <item>57 | 1.50 | 0.0613 0.0047 0.0660 | 1.0900</item>
- <item>58 | 1.50 | 0.0579 0.0069 0.0648 | 1.0730</item>
- <item>59 | 1.50 | 0.0568 0.0076 0.0644 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 141s</item>
- <item>Prepare output 7s</item>
- <item>149s</item>
- <item>Jacobian determinant (RMS): 0.011 0.037 0.058 0.084 0.110 | 0.115789</item>
- <item>Template Matching: 0.086 0.224 0.210 0.188 0.170 | 0.170370</item>
- <item>Write result maps: 28s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 30s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 33s</item>
- <item>79s</item>
- <item>Create initial surface 61s</item>
- <item>Topology correction: 79s</item>
- <item>Surface refinement: 58s</item>
- <item>Reduction of surface collisions with optimization: 50s</item>
- <item>Spherical mapping with areal smoothing 62s</item>
- <item>Spherical registration 217s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 24s</item>
- <item>CSF distance: 12s</item>
- <item>PBT2x thickness: 33s</item>
- <item>73s</item>
- <item>Create initial surface 60s</item>
- <item>Topology correction: 69s</item>
- <item>Surface refinement: 49s</item>
- <item>Reduction of surface collisions with optimization: 48s</item>
- <item>Spherical mapping with areal smoothing 62s</item>
- <item>Spherical registration 202s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5508 0.6717 mm</item>
- <item>Surface intensity / position RMSE: 0.0684 / 0.0828</item>
- <item>Euler number / defect number / defect size: 28.0 / 15.0 / 1.12%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3719195/ds/SWU_4/sub-0025804/ses-2/surf/lh.thickness.sub-0025804_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3719195/ds/SWU_4/sub-0025804/ses-2/surf/rh.thickness.sub-0025804_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3719195/ds/SWU_4/sub-0025804/ses-2/sub-0025804_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1246s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 15s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 61s</item>
- <item>ROI estimation of 'lpba40' atlas 24s</item>
- <item>ROI estimation of 'hammers' atlas 61s</item>
- <item>ROI estimation of 'thalamus' atlas 5s</item>
- <item>ROI estimation of 'ibsr' atlas 21s</item>
- <item>ROI estimation of 'aal3' atlas 35s</item>
- <item>ROI estimation of 'mori' atlas 52s</item>
- <item>ROI estimation of 'anatomy3' atlas 73s</item>
- <item>ROI estimation of 'julichbrain' atlas 89s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 35s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 65s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 105s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 117s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s</item>
- <item>Write results 9s</item>
- <item>769s</item>
- <item>Quality check: 9s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3719195/ds/SWU_4/sub-0025804/ses-2/report/catreport_sub-0025804_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 46 minute(s) and 9 second(s).</item>
- <item>Image Quality Rating (IQR): 82.61% (B-)</item>
- <item>GM volume (GMV): 48.51% (707.74 / 1458.90 ml)</item>
- <item>GM thickness (GMT): 2.55 0.67 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3719195/ds/SWU_4/sub-0025804/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3719195/ds/SWU_4/sub-0025804/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3719195/ds/SWU_4/sub-0025804/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|