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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_2199173/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>Desikan</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
- <BG>5</BG>
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- <ON>11</ON>
- <MB>13</MB>
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- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>18</SurfaceEulerNumber>
- <SurfaceDefectArea>1.09403936220769</SurfaceDefectArea>
- <SurfaceDefectNumber>12</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0695168823003769</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0742266476154327</SurfacePositionRMSE>
- <res_vx_vol>[1.00000001413423 0.999999990195458 1.00000001426618]</res_vx_vol>
- <res_vx_voli>[1.00000007268883 0.999999991072885 1.00000001415589]</res_vx_voli>
- <res_RMS>1.00000000619862</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[4.66099977493286 117.833000183105 261.595001220703 385.183990478516]</tissue_mn>
- <tissue_mnr>[0.0121007096022367 0.305913537740707 0.679142951965332 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.19923190964873 45.2986299096213 37.2367771330476 25.8918942455086]</tissue_std>
- <tissue_stdr>[0.0084074605256319 0.119043089449406 0.097856841981411 0.0680429190397263]</tissue_stdr>
- <contrast>125.102828979492</contrast>
- <contrastr>0.324787199497223</contrastr>
- <res_ECR>0.357085466384888</res_ECR>
- <NCR>0.150917991995811</NCR>
- <ICR>0.347377061843872</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.00000002826847 1.99999998039092 2.00000002853235]</res_vx_vol>
- <res_RMS>2.00000001239725</res_RMS>
- <res_ECR>2.71982383728027</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.21152520179749</contrastr>
- <NCR>2.49753093719482</NCR>
- <ICR>1.32137167453766</ICR>
- <SurfaceEulerNumber>1.81632653061224</SurfaceEulerNumber>
- <SurfaceDefectArea>1.27350984055192</SurfaceDefectArea>
- <SurfaceDefectNumber>1.6</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.39033770561218</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.48453295230865</SurfacePositionRMSE>
- <SIQR>2.51252628857921</SIQR>
- <IQR>2.33541332629098</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-010451</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>18</SurfaceEulerNumber>
- <SurfaceDefectArea>1.09403936220769</SurfaceDefectArea>
- <SurfaceDefectNumber>12</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0695168823003769</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0742266476154327</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>18</EC_abs>
- <defect_size>1.09403936220769</defect_size>
- <vol_abs_CGW>[279.47010412858 730.729343211184 506.669917909875 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.363247087126869</vol_abs_WMH>
- <vol_rel_WMH>0.000239471569173057</vol_rel_WMH>
- <surf_TSA>2046.2995315598</surf_TSA>
- <vol_TIV>1516.86936524964</vol_TIV>
- <vol_rel_CGW>[0.184241379337624 0.481735184289205 0.334023436373171 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.52623573998251 0.674482860684239]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.53005051612854 0.822877529994215 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.8288606194536 0.276899485577835 0.28881787613574;2.53755654780964 0.195780944379436 0.423705673336036;3.24311873869538 0.293115523747254 0.287476450528224]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.793063335421701 0.270441025379699 0.510505343234921;4.28310617752146 0.34782138816461 0.489494656765079]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.31856556252393</vol_TIV>
- <vol_rel_CGW>[1.15878914040273 6.50170948795267 3.84884045210436 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02394715691731</vol_rel_WMH>
- <surf_TSA>8.62274204050903</surf_TSA>
- <SQR>5.32683114818071</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336214491 0.325273265210566]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00427005952224135 0.0013987694401294 0.250741004943848]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[890.066234057704 446.719007356291 522.154075979108 435.561771192828 1648.13559116386 8141.24685003266]</SPMvols0>
- <SPMvols1>[754.285599948591 413.789922437595 317.844295353899 557.571976778001 1525.59149141944 7965.3252833841]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[143.585205078125 281.376190185547 376.582305908203]</T3th>
- <Tth>
- <T3th>[-5.61751985549927 4.99053955078125 5.85121440887451 143.585205078125 281.376190185547 376.582305908203 493.080871582031 1084.42077636719]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0195909887552261 0.0725516006350517 0.0805311426520348 0 0]</dtc>
- <ll>[0.0881017384981336 0 0.0881017384981336 0;0.207854620119532 0.0112642743865124 0.219118894506045 2402.083984375;0.207854620119532 0.0112642743865124 0.219118894506045 2402.083984375]</ll>
- <rmsdtc>[0.0454060472548008 0.098685197532177 0.110778197646141]</rmsdtc>
- <rmsgdt>[0.032881285995245 0.0474546886980534 0.0589096508920193]</rmsgdt>
- <rmsdt>0.110778197646141</rmsdt>
- <dt>0.0805311426520348</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00863055512309074 0.038315873593092 0.0451882928609848 0.0539961233735085 0.0615165680646896 0.0690452754497528]</dtc>
- <ll>[0.0883690026161511 0 0.0883690026161511 0;0.224290583028083 0.016821916971917 0.2411125 8610.71875;0.213979168056111 0.0186920742689437 0.232671242325055 13452.91015625;0.193839744285301 0.0210184584542444 0.214858202739545 22663.615234375;0.175912662424336 0.0247472275285491 0.200659889952885 43291.63671875;0.175912662424336 0.0247472275285491 0.200659889952885 43291.63671875]</ll>
- <rmsdtc>[0.0102368406951427 0.0373099707067013 0.0605051405727863 0.084778405725956 0.114101141691208 0.117767281830311]</rmsdtc>
- <rmsgdt>[0.00317261810414493 0.0125895477831364 0.0295027103275061 0.0516366511583328 0.0803704187273979 0.0782596692442894]</rmsgdt>
- <rmsdt>0.117767281830311</rmsdt>
- <dt>0.0690452754497528</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025764/ses-2/sub-0025764_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 56s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 4s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>27s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 6s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 47s</item>
- <item>SPM preprocessing 1 (estimate 2): 41s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 12s</item>
- <item>Update Segmentation 13s</item>
- <item>Update Skull-Stripping 32s</item>
- <item>Update probability maps 6s</item>
- <item>63s</item>
- <item>Global intensity correction: 10s</item>
- <item>SANLM denoising after intensity normalization (medium): 20s</item>
- <item>Fast Optimized Shooting registration 22s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 2s</item>
- <item>Prepare partitions 1s</item>
- <item>Prepare segments (LASmod = 1.10) 10s</item>
- <item>Estimate local tissue thresholds (WM) 12s</item>
- <item>Estimate local tissue thresholds (GM) 17s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 31s</item>
- <item>77s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 7s</item>
- <item>Blood vessel detection 6s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 14s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>41s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 23s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>7s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0884 0.0000 0.0884 | 32.0000</item>
- <item>2 | 2.50 | 0.0855 0.0013 0.0868 | 29.4886</item>
- <item>3 | 2.50 | 0.0847 0.0019 0.0866 | 26.9772</item>
- <item>4 | 2.50 | 0.0843 0.0021 0.0864 | 24.6107</item>
- <item>5 | 2.50 | 0.0839 0.0023 0.0862 | 22.6548</item>
- <item>6 | 2.50 | 0.0836 0.0024 0.0860 | 20.6989</item>
- <item>7 | 2.50 | 0.0833 0.0024 0.0858 | 18.9688</item>
- <item>8 | 2.50 | 0.0830 0.0025 0.0856 | 17.4455</item>
- <item>9 | 2.50 | 0.0827 0.0026 0.0853 | 15.9223</item>
- <item>10 | 2.50 | 0.0824 0.0027 0.0851 | 14.6627</item>
- <item>11 | 2.50 | 0.0821 0.0028 0.0848 | 13.4764</item>
- <item>12 | 2.50 | 0.0817 0.0028 0.0846 | 12.3015</item>
- <item>13 | 2.50 | 0.0814 0.0029 0.0843 | 11.3776</item>
- <item>14 | 2.50 | 0.0810 0.0030 0.0840 | 10.4537</item>
- <item>15 | 2.25 | 0.0817 0.0031 0.0848 | 9.5920</item>
- <item>16 | 2.25 | 0.0785 0.0046 0.0832 | 8.8725</item>
- <item>17 | 2.25 | 0.0772 0.0052 0.0824 | 8.1530</item>
- <item>18 | 2.25 | 0.0764 0.0054 0.0819 | 7.5234</item>
- <item>19 | 2.25 | 0.0758 0.0055 0.0814 | 6.9630</item>
- <item>20 | 2.25 | 0.0753 0.0056 0.0808 | 6.4027</item>
- <item>21 | 2.25 | 0.0748 0.0056 0.0804 | 5.9447</item>
- <item>29 | 2.00 | 0.0775 0.0033 0.0808 | 3.3283</item>
- <item>30 | 2.00 | 0.0729 0.0054 0.0784 | 3.1221</item>
- <item>31 | 2.00 | 0.0713 0.0062 0.0776 | 2.9160</item>
- <item>43 | 1.75 | 0.0710 0.0035 0.0745 | 1.5785</item>
- <item>44 | 1.75 | 0.0662 0.0061 0.0723 | 1.5194</item>
- <item>45 | 1.75 | 0.0646 0.0070 0.0716 | 1.4626</item>
- <item>57 | 1.50 | 0.0635 0.0051 0.0686 | 1.0900</item>
- <item>58 | 1.50 | 0.0598 0.0075 0.0674 | 1.0730</item>
- <item>59 | 1.50 | 0.0586 0.0082 0.0669 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 114s</item>
- <item>Prepare output 7s</item>
- <item>120s</item>
- <item>Jacobian determinant (RMS): 0.010 0.037 0.061 0.085 0.114 | 0.117767</item>
- <item>Template Matching: 0.088 0.224 0.214 0.194 0.176 | 0.175913</item>
- <item>Write result maps: 23s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 24s</item>
- <item>CSF distance: 10s</item>
- <item>PBT2x thickness: 30s</item>
- <item>68s</item>
- <item>Create initial surface 53s</item>
- <item>Topology correction: 66s</item>
- <item>Surface refinement: 58s</item>
- <item>Reduction of surface collisions with optimization: 49s</item>
- <item>Spherical mapping with areal smoothing 60s</item>
- <item>Spherical registration 176s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 20s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 30s</item>
- <item>64s</item>
- <item>Create initial surface 52s</item>
- <item>Topology correction: 66s</item>
- <item>Surface refinement: 60s</item>
- <item>Reduction of surface collisions with optimization: 49s</item>
- <item>Spherical mapping with areal smoothing 58s</item>
- <item>Spherical registration 188s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5263 0.6743 mm</item>
- <item>Surface intensity / position RMSE: 0.0695 / 0.0742</item>
- <item>Euler number / defect number / defect size: 18.0 / 12.0 / 1.09%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2199173/ds/SWU_4/sub-0025764/ses-2/surf/lh.thickness.sub-0025764_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2199173/ds/SWU_4/sub-0025764/ses-2/surf/rh.thickness.sub-0025764_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2199173/ds/SWU_4/sub-0025764/ses-2/sub-0025764_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 6s</item>
- <item>Surface and thickness estimation takes: 1133s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 6s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 22s</item>
- <item>ROI estimation of 'lpba40' atlas 6s</item>
- <item>ROI estimation of 'hammers' atlas 15s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 5s</item>
- <item>ROI estimation of 'aal3' atlas 9s</item>
- <item>ROI estimation of 'mori' atlas 13s</item>
- <item>ROI estimation of 'anatomy3' atlas 18s</item>
- <item>ROI estimation of 'julichbrain' atlas 24s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 17s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 39s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 59s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 5s</item>
- <item>Write results 6s</item>
- <item>251s</item>
- <item>Quality check: 7s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2199173/ds/SWU_4/sub-0025764/ses-2/report/catreport_sub-0025764_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 35 minute(s) and 20 second(s).</item>
- <item>Image Quality Rating (IQR): 81.65% (B-)</item>
- <item>GM volume (GMV): 48.17% (730.73 / 1516.87 ml)</item>
- <item>GM thickness (GMT): 2.53 0.67 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2199173/ds/SWU_4/sub-0025764/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2199173/ds/SWU_4/sub-0025764/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2199173/ds/SWU_4/sub-0025764/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|