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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <thick_limit>5</thick_limit>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_1727897/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
- </tr>
- <tr>
- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
- <LAB>
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- <CT>1</CT>
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- <VT>15</VT>
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- <HD>21</HD>
- <HI>23</HI>
- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>20</SurfaceEulerNumber>
- <SurfaceDefectArea>0.500716825957174</SurfaceDefectArea>
- <SurfaceDefectNumber>9</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.071053147315979</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0733212977647781</SurfacePositionRMSE>
- <res_vx_vol>[0.999999973841054 0.976562472713811 0.9765625]</res_vx_vol>
- <res_vx_voli>[0.999999979676033 0.976562470768818 0.9765625]</res_vx_voli>
- <res_RMS>0.984436984135479</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[4.4850001335144 132.397994995117 301.678009033203 435.032989501953]</tissue_mn>
- <tissue_mnr>[0.0103095630183816 0.304340124130249 0.693460047245026 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[9.10853948193209 53.1207364995666 40.5652099002627 25.8358919146821]</tissue_std>
- <tissue_stdr>[0.0211556889116764 0.123379357159138 0.0942176207900047 0.060006994754076]</tissue_stdr>
- <contrast>134.744125366211</contrast>
- <contrastr>0.309733122587204</contrastr>
- <res_ECR>0.31470775604248</res_ECR>
- <NCR>0.144726470112801</NCR>
- <ICR>0.332108706235886</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999994768211 1.95312494542762 1.953125]</res_vx_vol>
- <res_RMS>1.96887396827096</res_RMS>
- <res_ECR>2.50361084938049</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.43733644485474</contrastr>
- <NCR>2.40864872932434</NCR>
- <ICR>1.28350377082825</ICR>
- <SurfaceEulerNumber>1.91836734693878</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12517920648929</SurfaceDefectArea>
- <SurfaceDefectNumber>1.45</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.42106294631958</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.46642589569092</SurfacePositionRMSE>
- <SIQR>2.36157977779645</SIQR>
- <IQR>2.25949664713852</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-004616</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>20</SurfaceEulerNumber>
- <SurfaceDefectArea>0.500716825957174</SurfaceDefectArea>
- <SurfaceDefectNumber>9</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.071053147315979</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0733212977647781</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>20</EC_abs>
- <defect_size>0.500716825957174</defect_size>
- <vol_abs_CGW>[237.800488956082 776.626420726807 550.344742436418 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.569343538281204</vol_abs_WMH>
- <vol_rel_WMH>0.0003638508772255</vol_rel_WMH>
- <surf_TSA>2084.95431879535</surf_TSA>
- <vol_TIV>1564.77165211931</vol_TIV>
- <vol_rel_CGW>[0.151971368240221 0.496319331753585 0.351709300006194 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.66172402721168 0.670554749052622]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.65378522872925 0.830679863268719 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.98650542327467 0.282261405771379 0.294963049742324;2.68971258877024 0.199464803078656 0.449651206134512;3.43879491250899 0.309858839031167 0.255385744123164]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.895067433553127 0.323616338425919 0.529986457728768;4.43787452757027 0.306400317638108 0.470013542271232]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.62016145620902</vol_TIV>
- <vol_rel_CGW>[0.579227159486731 6.76363742373536 4.16647449723769 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03638508772255</vol_rel_WMH>
- <surf_TSA>8.62332023255313</surf_TSA>
- <SQR>5.54527645239036</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 10999.9994049 0.296243407219585]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00169944681692868 0.0012076540151611 0.334835767745972]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[927.459909539355 496.738898800239 442.674618333355 376.858957835837 928.927681556726 8341.88059975852]</SPMvols0>
- <SPMvols1>[804.226883506078 466.427805777724 257.28081176857 337.414574962799 765.800243112864 8369.02664609861]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[165.122497558594 318.858612060547 422.265289306641]</T3th>
- <Tth>
- <T3th>[-5.96772003173828 58.16015625 3.94078874588013 165.122497558594 318.858612060547 422.265289306641 550.836669921875 1060.15173339844]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0193394627422094 0.0727039501070976 0.0802092477679253 0 0]</dtc>
- <ll>[0.0891242300142713 0 0.0891242300142713 0;0.194642450486054 0.0118865978245546 0.206529048310608 2534.79321289062;0.194642450486054 0.0118865978245546 0.206529048310608 2534.79321289062]</ll>
- <rmsdtc>[0.0493872947990894 0.0973441228270531 0.108658418059349]</rmsdtc>
- <rmsgdt>[0.0365876480937004 0.0452270694077015 0.0557249113917351]</rmsgdt>
- <rmsdt>0.108658418059349</rmsdt>
- <dt>0.0802092477679253</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00839664880186319 0.035992868244648 0.0500281862914562 0.0590699873864651 0.0658441483974457 0.0740500092506409]</dtc>
- <ll>[0.0905731470174609 0 0.0905731470174609 0;0.220736782661783 0.0216322687728938 0.242369051434676 11073.017578125;0.198976291905651 0.0212616025142696 0.220237894419921 15302.23046875;0.17710961960433 0.0219214603319014 0.199031079936231 23637.296875;0.160132363936838 0.024395539468735 0.184527903405573 42676.41015625;0.160132363936838 0.024395539468735 0.184527903405573 42676.41015625]</ll>
- <rmsdtc>[0.0101582426577806 0.0406967028975487 0.0640413910150528 0.0911639556288719 0.115334764122963 0.122410736978054]</rmsdtc>
- <rmsgdt>[0.00354489567689598 0.0139588452875614 0.029971482232213 0.050631083548069 0.0691660493612289 0.0751790329813957]</rmsgdt>
- <rmsdt>0.122410736978054</rmsdt>
- <dt>0.0740500092506409</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0027160/ses-1/sub-0027160_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 64s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 7s</item>
- <item>Initial correction 12s</item>
- <item>Refine background 4s</item>
- <item>Final correction 10s</item>
- <item>Final scaling 6s</item>
- <item>54s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 15s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 101s</item>
- <item>SPM preprocessing 1 (estimate 2): 104s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 22s</item>
- <item>Update Segmentation 25s</item>
- <item>Update Skull-Stripping 51s</item>
- <item>Update probability maps 10s</item>
- <item>109s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 37s</item>
- <item>Fast Optimized Shooting registration 41s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.07) 19s</item>
- <item>Estimate local tissue thresholds (WM) 25s</item>
- <item>Estimate local tissue thresholds (GM) 39s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 59s</item>
- <item>153s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 21s</item>
- <item>Blood vessel detection 14s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 35s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>94s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 42s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>15s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0906 0.0000 0.0906 | 32.0000</item>
- <item>2 | 2.50 | 0.0861 0.0016 0.0877 | 29.4886</item>
- <item>3 | 2.50 | 0.0845 0.0026 0.0871 | 26.9772</item>
- <item>4 | 2.50 | 0.0837 0.0031 0.0868 | 24.6107</item>
- <item>5 | 2.50 | 0.0830 0.0034 0.0864 | 22.6548</item>
- <item>6 | 2.50 | 0.0825 0.0036 0.0861 | 20.6989</item>
- <item>7 | 2.50 | 0.0820 0.0037 0.0857 | 18.9688</item>
- <item>8 | 2.50 | 0.0815 0.0039 0.0854 | 17.4455</item>
- <item>9 | 2.50 | 0.0809 0.0040 0.0850 | 15.9223</item>
- <item>10 | 2.50 | 0.0804 0.0042 0.0846 | 14.6627</item>
- <item>11 | 2.50 | 0.0799 0.0043 0.0842 | 13.4764</item>
- <item>12 | 2.50 | 0.0793 0.0044 0.0837 | 12.3015</item>
- <item>13 | 2.50 | 0.0788 0.0046 0.0833 | 11.3776</item>
- <item>14 | 2.50 | 0.0783 0.0046 0.0829 | 10.4537</item>
- <item>15 | 2.25 | 0.0787 0.0048 0.0835 | 9.5920</item>
- <item>16 | 2.25 | 0.0751 0.0066 0.0817 | 8.8725</item>
- <item>17 | 2.25 | 0.0736 0.0072 0.0808 | 8.1530</item>
- <item>29 | 2.00 | 0.0753 0.0033 0.0787 | 3.3283</item>
- <item>30 | 2.00 | 0.0687 0.0061 0.0748 | 3.1221</item>
- <item>31 | 2.00 | 0.0663 0.0071 0.0734 | 2.9160</item>
- <item>43 | 1.75 | 0.0652 0.0041 0.0693 | 1.5785</item>
- <item>44 | 1.75 | 0.0606 0.0065 0.0671 | 1.5194</item>
- <item>45 | 1.75 | 0.0590 0.0073 0.0663 | 1.4626</item>
- <item>57 | 1.50 | 0.0576 0.0054 0.0630 | 1.0900</item>
- <item>58 | 1.50 | 0.0544 0.0075 0.0619 | 1.0730</item>
- <item>59 | 1.50 | 0.0534 0.0081 0.0615 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 217s</item>
- <item>Prepare output 15s</item>
- <item>232s</item>
- <item>Jacobian determinant (RMS): 0.010 0.041 0.064 0.091 0.115 | 0.122411</item>
- <item>Template Matching: 0.091 0.221 0.199 0.177 0.160 | 0.160132</item>
- <item>Write result maps: 52s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 48s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 63s</item>
- <item>139s</item>
- <item>Create initial surface 105s</item>
- <item>Topology correction: 121s</item>
- <item>Surface refinement: 117s</item>
- <item>Reduction of surface collisions with optimization: 90s</item>
- <item>Spherical mapping with areal smoothing 109s</item>
- <item>Spherical registration 321s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 43s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 63s</item>
- <item>134s</item>
- <item>Create initial surface 102s</item>
- <item>Topology correction: 121s</item>
- <item>Surface refinement: 112s</item>
- <item>Reduction of surface collisions with optimization: 86s</item>
- <item>Spherical mapping with areal smoothing 111s</item>
- <item>Spherical registration 355s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6618 0.6705 mm</item>
- <item>Surface intensity / position RMSE: 0.0711 / 0.0733</item>
- <item>Euler number / defect number / defect size: 20.0 / 9.0 / 0.50%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1727897/ds/SWU_3/sub-0027160/ses-1/surf/lh.thickness.sub-0027160_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1727897/ds/SWU_3/sub-0027160/ses-1/surf/rh.thickness.sub-0027160_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_1727897/ds/SWU_3/sub-0027160/ses-1/sub-0027160_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 13s</item>
- <item>Surface and thickness estimation takes: 2148s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 13s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 46s</item>
- <item>ROI estimation of 'lpba40' atlas 14s</item>
- <item>ROI estimation of 'hammers' atlas 32s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 12s</item>
- <item>ROI estimation of 'aal3' atlas 20s</item>
- <item>ROI estimation of 'mori' atlas 25s</item>
- <item>ROI estimation of 'anatomy3' atlas 50s</item>
- <item>ROI estimation of 'julichbrain' atlas 59s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 32s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 78s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 111s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 9s</item>
- <item>Write results 11s</item>
- <item>523s</item>
- <item>Quality check: 16s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_1727897/ds/SWU_3/sub-0027160/ses-1/report/catreport_sub-0027160_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 65 minute(s) and 27 second(s).</item>
- <item>Image Quality Rating (IQR): 82.41% (B-)</item>
- <item>GM volume (GMV): 49.63% (776.63 / 1564.77 ml)</item>
- <item>GM thickness (GMT): 2.66 0.67 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_1727897/ds/SWU_3/sub-0027160/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_1727897/ds/SWU_3/sub-0027160/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_1727897/ds/SWU_3/sub-0027160/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|