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- <uhrlim>1.4</uhrlim>
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- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <expertgui>1</expertgui>
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- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_1035605/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>Desikan</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
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- <BG>5</BG>
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- <MB>13</MB>
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- <NV>17</NV>
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- <PH>25</PH>
- <LE>27</LE>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <qualitymeasures>
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- <SurfaceEulerNumber>90</SurfaceEulerNumber>
- <SurfaceDefectArea>3.07543673740534</SurfaceDefectArea>
- <SurfaceDefectNumber>36</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0830451846122742</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.100290387868881</SurfacePositionRMSE>
- <res_vx_vol>[1.33000183105469 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1.12084861758235</res_RMS>
- <res_BB>NaN</res_BB>
- <tissue_mn>[0 12.4479999542236 78.7220001220703 141.811004638672]</tissue_mn>
- <tissue_mnr>[0 0.0877787992358208 0.555119097232819 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[2.61191279481703 21.8115579812589 17.5620743516154 13.3304177164095]</tissue_std>
- <tissue_stdr>[0.0184182655066252 0.153807237744331 0.123841404914856 0.094001293182373]</tissue_stdr>
- <contrast>48.8336334228516</contrast>
- <contrastr>0.344357162714005</contrastr>
- <res_ECR>0.444269418716431</res_ECR>
- <NCR>0.189846336841583</NCR>
- <ICR>0.395521640777588</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000366210938 2 2]</res_vx_vol>
- <res_RMS>2.24169723516471</res_RMS>
- <res_ECR>3.16463994979858</res_ECR>
- <res_BB>NaN</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.91797590255737</contrastr>
- <NCR>3.05636429786682</NCR>
- <ICR>1.44077789783478</ICR>
- <SurfaceEulerNumber>5.48979591836735</SurfaceEulerNumber>
- <SurfaceDefectArea>1.76885918435133</SurfaceDefectArea>
- <SurfaceDefectNumber>2.8</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.66090369224548</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>2.00580787658691</SurfacePositionRMSE>
- <SIQR>2.97304949573719</SIQR>
- <IQR>2.83101655910864</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-040335</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>90</SurfaceEulerNumber>
- <SurfaceDefectArea>3.07543673740534</SurfaceDefectArea>
- <SurfaceDefectNumber>36</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0830451846122742</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.100290387868881</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>90</EC_abs>
- <defect_size>3.07543673740534</defect_size>
- <vol_abs_CGW>[155.920956862745 607.871737254902 406.134905882353 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.532521568627451</vol_abs_WMH>
- <vol_rel_WMH>0.000455174806225147</vol_rel_WMH>
- <surf_TSA>1659.73826033115</surf_TSA>
- <vol_TIV>1169.9276</vol_TIV>
- <vol_rel_CGW>[0.133274022138417 0.519580645208218 0.347145332653365 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.49371959101752 0.703288923396962]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.51899385452271 0.875696261812589 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.78470145069263 0.306751104693087 0.293362582634216;2.52796384619424 0.206040443742643 0.405596893249933;3.25257967470748 0.30623741284754 0.301040524115851]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.699906075365839 0.253805694127218 0.631896643015991;4.26460681349828 0.340295619114163 0.368103356984009]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>2.16235082816477</vol_TIV>
- <vol_rel_CGW>[0.5 7.18140526595219 4.08450669276877 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04551748062251</vol_rel_WMH>
- <surf_TSA>8.437409175369</surf_TSA>
- <SQR>5.88070551341318</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11156.864 0.450369346208722]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00186231569387019 0.00162666197866201 0.106147192418575]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[712.044294117647 370.210905882353 314.484745098039 1323.9168745098 1130.09257254902 7979.44094117647]</SPMvols0>
- <SPMvols1>[625.180576470588 346.14971372549 165.993635294118 616.016023529412 886.224074509804 8501.93936862745]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[22.7073993682861 83.8217010498047 137.40119934082]</T3th>
- <Tth>
- <T3th>[-19.1798801422119 -19.1798763275146 1.21125400066376 22.7073993682861 83.8217010498047 137.40119934082 194.748107910156 495.906890869141]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0231843441724777 0.0837191715836525 0.0927243903279305 0 0]</dtc>
- <ll>[0.0823844186111945 0 0.0823844186111945 0;0.184818501375159 0.0106716488017326 0.195490150176892 2275.70776367188;0.184818501375159 0.0106716488017326 0.195490150176892 2275.70776367188]</ll>
- <rmsdtc>[0.0497907027602196 0.108041882514954 0.118737176060677]</rmsdtc>
- <rmsgdt>[0.035499569028616 0.0457169227302074 0.0555068328976631]</rmsgdt>
- <rmsdt>0.118737176060677</rmsdt>
- <dt>0.0927243903279305</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0111209275200963 0.041289146989584 0.0573781542479992 0.0644973292946815 0.0687750354409218 0.077219121158123]</dtc>
- <ll>[0.0815675912053312 0 0.0815675912053312 0;0.207137561050061 0.015143712797619 0.22228127384768 7751.68798828125;0.183655840808546 0.0166702382450376 0.200326079053583 11997.7705078125;0.165134295891946 0.0172403014962829 0.182374597388229 18589.734375;0.15318097247954 0.0175790918753248 0.170760064354864 30752.037109375;0.15318097247954 0.0175790918753248 0.170760064354864 30752.037109375]</ll>
- <rmsdtc>[0.0128799229860306 0.0468204915523529 0.0685712322592735 0.0923183038830757 0.112965278327465 0.117610812187195]</rmsdtc>
- <rmsgdt>[0.00348105700686574 0.0136001156643033 0.0282834339886904 0.046978585422039 0.0634587109088898 0.0677133277058601]</rmsgdt>
- <rmsdt>0.117610812187195</rmsdt>
- <dt>0.077219121158123</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025051/ses-1/sub-0025051_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 26s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 5s</item>
- <item>Estimate background 5s</item>
- <item>Initial correction 5s</item>
- <item>Refine background 2s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 3s</item>
- <item>29s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 8s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 10s</item>
- <item>Use initial fine affine registration. 52s</item>
- <item>SPM preprocessing 1 (estimate 2): 66s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 13s</item>
- <item>Update Segmentation 14s</item>
- <item>Update Skull-Stripping 33s</item>
- <item>Update probability maps 7s</item>
- <item>68s</item>
- <item>Global intensity correction: 13s</item>
- <item>SANLM denoising after intensity normalization (medium): 17s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 10s</item>
- <item>Estimate local tissue thresholds (WM) 14s</item>
- <item>Estimate local tissue thresholds (GM) 20s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 31s</item>
- <item>81s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 10s</item>
- <item>Blood vessel detection 6s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 16s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>47s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 24s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>8s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0816 0.0000 0.0816 | 32.0000</item>
- <item>2 | 2.50 | 0.0784 0.0013 0.0797 | 29.4886</item>
- <item>3 | 2.50 | 0.0775 0.0020 0.0795 | 26.9772</item>
- <item>4 | 2.50 | 0.0770 0.0023 0.0793 | 24.6107</item>
- <item>5 | 2.50 | 0.0766 0.0025 0.0791 | 22.6548</item>
- <item>6 | 2.50 | 0.0763 0.0026 0.0789 | 20.6989</item>
- <item>7 | 2.50 | 0.0760 0.0027 0.0787 | 18.9688</item>
- <item>8 | 2.50 | 0.0756 0.0028 0.0785 | 17.4455</item>
- <item>9 | 2.50 | 0.0753 0.0029 0.0782 | 15.9223</item>
- <item>10 | 2.50 | 0.0749 0.0030 0.0780 | 14.6627</item>
- <item>11 | 2.50 | 0.0746 0.0031 0.0777 | 13.4764</item>
- <item>12 | 2.50 | 0.0742 0.0032 0.0774 | 12.3015</item>
- <item>13 | 2.50 | 0.0738 0.0033 0.0771 | 11.3776</item>
- <item>14 | 2.50 | 0.0734 0.0034 0.0769 | 10.4537</item>
- <item>15 | 2.25 | 0.0720 0.0035 0.0756 | 9.5920</item>
- <item>16 | 2.25 | 0.0690 0.0050 0.0741 | 8.8725</item>
- <item>29 | 2.00 | 0.0691 0.0023 0.0714 | 3.3283</item>
- <item>30 | 2.00 | 0.0632 0.0046 0.0678 | 3.1221</item>
- <item>31 | 2.00 | 0.0612 0.0056 0.0668 | 2.9160</item>
- <item>43 | 1.75 | 0.0598 0.0032 0.0630 | 1.5785</item>
- <item>44 | 1.75 | 0.0562 0.0051 0.0613 | 1.5194</item>
- <item>45 | 1.75 | 0.0550 0.0057 0.0608 | 1.4626</item>
- <item>57 | 1.50 | 0.0536 0.0042 0.0578 | 1.0900</item>
- <item>58 | 1.50 | 0.0511 0.0059 0.0569 | 1.0730</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 117s</item>
- <item>Prepare output 8s</item>
- <item>124s</item>
- <item>Jacobian determinant (RMS): 0.013 0.047 0.069 0.092 0.113 | 0.117611</item>
- <item>Template Matching: 0.082 0.207 0.184 0.165 0.153 | 0.153181</item>
- <item>Write result maps: 46s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 20s</item>
- <item>CSF distance: 10s</item>
- <item>PBT2x thickness: 32s</item>
- <item>66s</item>
- <item>Create initial surface 60s</item>
- <item>Topology correction: 72s</item>
- <item>Surface refinement: 50s</item>
- <item>Reduction of surface collisions with optimization: 46s</item>
- <item>Spherical mapping with areal smoothing 56s</item>
- <item>Spherical registration 256s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 19s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 31s</item>
- <item>65s</item>
- <item>Create initial surface 57s</item>
- <item>Topology correction: 58s</item>
- <item>Surface refinement: 48s</item>
- <item>Reduction of surface collisions with optimization: 44s</item>
- <item>Spherical mapping with areal smoothing 54s</item>
- <item>Spherical registration 244s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4943 0.7012 mm</item>
- <item>Surface intensity / position RMSE: 0.0830 / 0.1003</item>
- <item>Euler number / defect number / defect size: 90.0 / 36.0 / 3.08%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1035605/ds/NYU_2/sub-0025051/ses-1/surf/lh.thickness.sub-0025051_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1035605/ds/NYU_2/sub-0025051/ses-1/surf/rh.thickness.sub-0025051_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_1035605/ds/NYU_2/sub-0025051/ses-1/sub-0025051_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 6s</item>
- <item>Surface and thickness estimation takes: 1249s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 25s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 17s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 21s</item>
- <item>ROI estimation of 'julichbrain' atlas 28s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 20s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 45s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 68s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 6s</item>
- <item>Write results 7s</item>
- <item>290s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_1035605/ds/NYU_2/sub-0025051/ses-1/report/catreport_sub-0025051_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 37 minute(s) and 31 second(s).</item>
- <item>Image Quality Rating (IQR): 76.69% (C+)</item>
- <item>GM volume (GMV): 51.96% (607.87 / 1169.93 ml)</item>
- <item>GM thickness (GMT): 2.49 0.70 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_1035605/ds/NYU_2/sub-0025051/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_1035605/ds/NYU_2/sub-0025051/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_1035605/ds/NYU_2/sub-0025051/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|