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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_2789911/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
- <LAB>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>10</SurfaceEulerNumber>
- <SurfaceDefectArea>0.189705746675317</SurfaceDefectArea>
- <SurfaceDefectNumber>5.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0656058490276337</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0666957497596741</SurfacePositionRMSE>
- <res_vx_vol>[0.999999997979697 1.00000002303022 0.999999997674458]</res_vx_vol>
- <res_vx_voli>[0.999999998541981 1.00000002365511 0.999999997431724]</res_vx_voli>
- <res_RMS>1.00000000622813</res_RMS>
- <res_BB>0.0170551761984825</res_BB>
- <tissue_mn>[0 105.356002807617 273.230010986328 406.861999511719]</tissue_mn>
- <tissue_mnr>[0 0.258947759866714 0.671554505825043 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[13.7328272576268 42.7615036325818 42.2530302062377 27.1567817909245]</tissue_std>
- <tissue_stdr>[0.0337530337274075 0.105100758373737 0.103851012885571 0.0667469128966331]</tissue_stdr>
- <contrast>133.631988525391</contrast>
- <contrastr>0.328445494174957</contrastr>
- <res_ECR>0.391222536563873</res_ECR>
- <NCR>0.152718588709831</NCR>
- <ICR>0.29281935095787</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999999595939 2.00000004606045 1.99999999534892]</res_vx_vol>
- <res_RMS>2.00000001245625</res_RMS>
- <res_ECR>2.89399242401123</res_ECR>
- <res_BB>1.00852763652802</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.15665078163147</contrastr>
- <NCR>2.52337908744812</NCR>
- <ICR>1.18605995178223</ICR>
- <SurfaceEulerNumber>1.40816326530612</SurfaceEulerNumber>
- <SurfaceDefectArea>1.04742643666883</SurfaceDefectArea>
- <SurfaceDefectNumber>1.275</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.31211698055267</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.33391499519348</SurfacePositionRMSE>
- <SIQR>2.6277430376279</SIQR>
- <IQR>2.35619336237881</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-030157</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>10</SurfaceEulerNumber>
- <SurfaceDefectArea>0.189705746675317</SurfaceDefectArea>
- <SurfaceDefectNumber>5.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0656058490276337</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0666957497596741</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>10</EC_abs>
- <defect_size>0.189705746675317</defect_size>
- <vol_abs_CGW>[259.322122737245 592.608427318476 430.264263347539 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.732372563395214</vol_abs_WMH>
- <vol_rel_WMH>0.000571186652558138</vol_rel_WMH>
- <surf_TSA>1714.26903099053</surf_TSA>
- <vol_TIV>1282.19481340326</vol_TIV>
- <vol_rel_CGW>[0.202248613101889 0.462182829881793 0.335568557016318 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.49607849962319 0.667844865457853]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.47903275489807 0.85039564974348 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.82589754079227 0.289811765736562 0.305257866400507;2.51414321089156 0.194797820518281 0.436176335594233;3.2396645210983 0.309695641268239 0.25856579800526]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.801659206931909 0.231306423983815 0.498201242777717;4.33931309887308 0.347227761791824 0.501798757222283]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.32357750405828</vol_TIV>
- <vol_rel_CGW>[1.48219491921497 6.15055369758967 3.87659046365513 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.05711866525581</vol_rel_WMH>
- <surf_TSA>8.51931306179702</surf_TSA>
- <SQR>5.04520729967036</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 9830.40018367492 0.381938927513048]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00153096730355173 0.00136773614212871 0.261223018169403]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[699.225154901432 405.560509921457 428.178439777185 1820.65745534519 597.417352903066 6728.38579089377]</SPMvols0>
- <SPMvols1>[600.136807858406 375.555383842295 263.739432627873 874.59076226522 508.851300184227 7210.28518466661]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[122.810096740723 283.448608398438 389.271392822266]</T3th>
- <Tth>
- <T3th>[-6.07197999954224 -6.07197713851929 6.56768369674683 122.810096740723 283.448608398438 389.271392822266 522.502075195312 1008.25769042969]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0207448061555624 0.076833039522171 0.085172601044178 0 0]</dtc>
- <ll>[0.0859143034655268 0 0.0859143034655268 0;0.200398256226319 0.0113167516609915 0.21171500788731 2413.27465820312;0.200398256226319 0.0113167516609915 0.21171500788731 2413.27465820312]</ll>
- <rmsdtc>[0.0450856201350689 0.101567983627319 0.114094451069832]</rmsdtc>
- <rmsgdt>[0.0323361195623875 0.0479710623621941 0.0590204782783985]</rmsgdt>
- <rmsdt>0.114094451069832</rmsdt>
- <dt>0.085172601044178</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.009135527536273 0.0336022973060608 0.0487446710467339 0.0573278069496155 0.0636427775025368 0.0711656734347343]</dtc>
- <ll>[0.0856678282685589 0 0.0856678282685589 0;0.223690506715507 0.0141531116452991 0.237843618360806 7244.6240234375;0.200356336110833 0.0174222181819777 0.217778554292811 12538.9794921875;0.179298610995185 0.0191840998693975 0.198482710864582 20685.677734375;0.162657136667099 0.0216480616333582 0.184305198300457 37870.1015625;0.162657136667099 0.0216480616333582 0.184305198300457 37870.1015625]</ll>
- <rmsdtc>[0.0106574147939682 0.0393932685256004 0.0605511628091335 0.0859681963920593 0.107854746282101 0.114001631736755]</rmsdtc>
- <rmsgdt>[0.003329296130687 0.0130922142416239 0.0280956383794546 0.0474159047007561 0.0640993192791939 0.0694878846406937]</rmsgdt>
- <rmsdt>0.114001631736755</rmsdt>
- <dt>0.0711656734347343</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025421/ses-1/sub-0025421_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 28s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 4s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 3s</item>
- <item>23s</item>
- <item>Correct center-of-mass 2s</item>
- <item>Affine registration 6s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 47s</item>
- <item>SPM preprocessing 1 (estimate 2): 47s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 10s</item>
- <item>Update Segmentation 13s</item>
- <item>Update Skull-Stripping 27s</item>
- <item>Update probability maps 6s</item>
- <item>56s</item>
- <item>Global intensity correction: 10s</item>
- <item>SANLM denoising after intensity normalization (medium): 16s</item>
- <item>Fast Optimized Shooting registration 23s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 2s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.06) 9s</item>
- <item>Estimate local tissue thresholds (WM) 11s</item>
- <item>Estimate local tissue thresholds (GM) 16s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 28s</item>
- <item>70s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 7s</item>
- <item>Blood vessel detection 6s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.13) 14s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>40s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 21s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 2s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>7s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0857 0.0000 0.0857 | 32.0000</item>
- <item>2 | 2.50 | 0.0829 0.0013 0.0842 | 29.4886</item>
- <item>3 | 2.50 | 0.0821 0.0019 0.0840 | 26.9772</item>
- <item>4 | 2.50 | 0.0817 0.0021 0.0839 | 24.6107</item>
- <item>5 | 2.50 | 0.0814 0.0023 0.0837 | 22.6548</item>
- <item>6 | 2.50 | 0.0811 0.0023 0.0835 | 20.6989</item>
- <item>7 | 2.50 | 0.0809 0.0024 0.0833 | 18.9688</item>
- <item>8 | 2.50 | 0.0806 0.0026 0.0831 | 17.4455</item>
- <item>9 | 2.50 | 0.0803 0.0026 0.0829 | 15.9223</item>
- <item>10 | 2.50 | 0.0799 0.0027 0.0827 | 14.6627</item>
- <item>11 | 2.50 | 0.0796 0.0028 0.0824 | 13.4764</item>
- <item>12 | 2.50 | 0.0793 0.0029 0.0822 | 12.3015</item>
- <item>13 | 2.50 | 0.0789 0.0030 0.0819 | 11.3776</item>
- <item>14 | 2.50 | 0.0786 0.0030 0.0816 | 10.4537</item>
- <item>15 | 2.25 | 0.0779 0.0031 0.0810 | 9.5920</item>
- <item>16 | 2.25 | 0.0746 0.0047 0.0793 | 8.8725</item>
- <item>29 | 2.00 | 0.0756 0.0021 0.0777 | 3.3283</item>
- <item>30 | 2.00 | 0.0690 0.0048 0.0738 | 3.1221</item>
- <item>31 | 2.00 | 0.0668 0.0058 0.0726 | 2.9160</item>
- <item>43 | 1.75 | 0.0656 0.0033 0.0689 | 1.5785</item>
- <item>44 | 1.75 | 0.0612 0.0056 0.0668 | 1.5194</item>
- <item>45 | 1.75 | 0.0598 0.0064 0.0662 | 1.4626</item>
- <item>57 | 1.50 | 0.0582 0.0047 0.0628 | 1.0900</item>
- <item>58 | 1.50 | 0.0552 0.0066 0.0618 | 1.0730</item>
- <item>59 | 1.50 | 0.0542 0.0072 0.0614 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 117s</item>
- <item>Prepare output 6s</item>
- <item>123s</item>
- <item>Jacobian determinant (RMS): 0.011 0.039 0.061 0.086 0.108 | 0.114002</item>
- <item>Template Matching: 0.086 0.224 0.200 0.179 0.163 | 0.162657</item>
- <item>Write result maps: 21s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 17s</item>
- <item>CSF distance: 8s</item>
- <item>PBT2x thickness: 26s</item>
- <item>55s</item>
- <item>Create initial surface 44s</item>
- <item>Topology correction: 50s</item>
- <item>Surface refinement: 58s</item>
- <item>Reduction of surface collisions with optimization: 36s</item>
- <item>Spherical mapping with areal smoothing 49s</item>
- <item>Spherical registration 194s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 16s</item>
- <item>CSF distance: 9s</item>
- <item>PBT2x thickness: 26s</item>
- <item>55s</item>
- <item>Create initial surface 47s</item>
- <item>Topology correction: 51s</item>
- <item>Surface refinement: 52s</item>
- <item>Reduction of surface collisions with optimization: 36s</item>
- <item>Spherical mapping with areal smoothing 51s</item>
- <item>Spherical registration 189s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4961 0.6676 mm</item>
- <item>Surface intensity / position RMSE: 0.0656 / 0.0667</item>
- <item>Euler number / defect number / defect size: 10.0 / 5.5 / 0.19%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2789911/ds/LMU_3/sub-0025421/ses-1/surf/lh.thickness.sub-0025421_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2789911/ds/LMU_3/sub-0025421/ses-1/surf/rh.thickness.sub-0025421_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2789911/ds/LMU_3/sub-0025421/ses-1/sub-0025421_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 6s</item>
- <item>Surface and thickness estimation takes: 1024s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 6s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 20s</item>
- <item>ROI estimation of 'lpba40' atlas 6s</item>
- <item>ROI estimation of 'hammers' atlas 14s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 5s</item>
- <item>ROI estimation of 'aal3' atlas 7s</item>
- <item>ROI estimation of 'mori' atlas 12s</item>
- <item>ROI estimation of 'anatomy3' atlas 16s</item>
- <item>ROI estimation of 'julichbrain' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 9s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 33s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 51s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 4s</item>
- <item>Write results 5s</item>
- <item>220s</item>
- <item>Quality check: 7s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2789911/ds/LMU_3/sub-0025421/ses-1/report/catreport_sub-0025421_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 30 minute(s) and 48 second(s).</item>
- <item>Image Quality Rating (IQR): 81.44% (B-)</item>
- <item>GM volume (GMV): 46.22% (592.61 / 1282.19 ml)</item>
- <item>GM thickness (GMT): 2.50 0.67 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2789911/ds/LMU_3/sub-0025421/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2789911/ds/LMU_3/sub-0025421/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2789911/ds/LMU_3/sub-0025421/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|