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- <darteltpm>
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- </brainmask>
- <T1>
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- </T1>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>1</td>
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- <td>/var/lib/condor/execute/dir_2388102/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <td>0</td>
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- <td>0</td>
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- <td>HCP</td>
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- <td>Schaefer2018_200P_17N</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_600P_17N</td>
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- <td>0</td>
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- </shootingtpms>
- <templates>
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- <SurfaceDefectArea>1.01103508735209</SurfaceDefectArea>
- <SurfaceDefectNumber>13</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0679763182997704</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0729872733354568</SurfacePositionRMSE>
- <res_vx_vol>[0.999999974683983 0.999999994551024 0.99999999023079]</res_vx_vol>
- <res_vx_voli>[0.999999975613633 0.999999994746076 0.99999999033475]</res_vx_voli>
- <res_RMS>0.999999986488599</res_RMS>
- <res_BB>0.000114286282041576</res_BB>
- <tissue_mn>[6.35300016403198 19.5869998931885 194.147994995117 398.428009033203]</tissue_mn>
- <tissue_mnr>[0.0159451644867659 0.0491607002913952 0.487285017967224 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.01690177441841 47.281476458325 50.3099550640376 37.6241197407404]</tissue_std>
- <tissue_stdr>[0.0102452374994755 0.120592936873436 0.128317162394524 0.0959615334868431]</tissue_stdr>
- <contrast>131.134124755859</contrast>
- <contrastr>0.32912877202034</contrastr>
- <res_ECR>0.35643994808197</res_ECR>
- <NCR>0.115218423306942</NCR>
- <ICR>0.313874900341034</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999994936797 1.99999998910205 1.99999998046158]</res_vx_vol>
- <res_RMS>1.9999999729772</res_RMS>
- <res_ECR>2.71653032302856</res_ECR>
- <res_BB>1.00005710124969</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.14640164375305</contrastr>
- <NCR>1.98504781723022</NCR>
- <ICR>1.23828101158142</ICR>
- <SurfaceEulerNumber>2.22448979591837</SurfaceEulerNumber>
- <SurfaceDefectArea>1.25275877183802</SurfaceDefectArea>
- <SurfaceDefectNumber>1.65</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.35952639579773</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.45974540710449</SurfacePositionRMSE>
- <SIQR>2.41427568691873</SIQR>
- <IQR>1.99262205916926</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-011210</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>26</SurfaceEulerNumber>
- <SurfaceDefectArea>1.01103508735209</SurfaceDefectArea>
- <SurfaceDefectNumber>13</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0679763182997704</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0729872733354568</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>26</EC_abs>
- <defect_size>1.01103508735209</defect_size>
- <vol_abs_CGW>[263.409895528884 792.997310007282 543.912798229056 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.28701175342473</vol_abs_WMH>
- <vol_rel_WMH>0.000179346476173172</vol_rel_WMH>
- <surf_TSA>2219.46047482479</surf_TSA>
- <vol_TIV>1600.32000376522</vol_TIV>
- <vol_rel_CGW>[0.164598264665276 0.495524212745903 0.339877522588821 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.50779395763667 0.611237167676803]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.51335906982422 0.687859736141494 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.91652405591813 0.23846147071463 0.299240151969606;2.53449202297022 0.176329871402196 0.418744028971983;3.17098722486065 0.25056285814252 0.282015819058411]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.913078565505978 0.339415477417238 0.563503649635037;4.0048297850539 0.312425138947133 0.436496350364963]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.89853652292131</vol_TIV>
- <vol_rel_CGW>[0.806003316545914 6.74935726914337 3.95397849477049 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.01793464761732</vol_rel_WMH>
- <surf_TSA>8.62393222053919</surf_TSA>
- <SQR>5.52890492811268</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.3355324649 0.486581804865515]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00137213850393891 0.00117811793461442 0.0756077989935875]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[979.28600072432 464.666107226243 624.747402894945 404.619744880515 1080.62966732919 8654.0939657285]</SPMvols0>
- <SPMvols1>[804.282238975486 432.175163405278 323.996759814152 410.901270123813 966.227271825835 8596.94794836681]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[42.9766998291016 218.297302246094 417.593200683594]</T3th>
- <Tth>
- <T3th>[-4.89354991912842 -4.89355182647705 3.09103965759277 42.9766998291016 218.297302246094 417.593200683594 604.901489257812 1286.40966796875]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0190938729792833 0.0689300000667572 0.0763155743479729 0 0]</dtc>
- <ll>[0.08533456717648 0 0.08533456717648 0;0.210274667728419 0.00942651478468585 0.219701182513105 2010.18542480469;0.210274667728419 0.00942651478468585 0.219701182513105 2010.18542480469]</ll>
- <rmsdtc>[0.0439391322433949 0.0937687531113625 0.106470108032227]</rmsdtc>
- <rmsgdt>[0.0317386910319328 0.0466881394386292 0.0584744662046432]</rmsgdt>
- <rmsdt>0.106470108032227</rmsdt>
- <dt>0.0763155743479729</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00760761089622974 0.0263748336583376 0.0374818556010723 0.0468041300773621 0.0545329079031944 0.0605378448963165]</dtc>
- <ll>[0.0826308836799801 0 0.0826308836799801 0;0.224850854700855 0.01015821504884 0.235009069749695 5199.736328125;0.207672912915166 0.0142150338868186 0.221887946801985 10230.73046875;0.187507549695253 0.0176632691878765 0.20517081888313 19045.80859375;0.17036119925481 0.0212126640535101 0.19157386330832 37108.4375;0.17036119925481 0.0212126640535101 0.19157386330832 37108.4375]</ll>
- <rmsdtc>[0.00898023694753647 0.0313901342451572 0.0482028052210808 0.0732789412140846 0.0994659885764122 0.105966560542583]</rmsdtc>
- <rmsgdt>[0.00286212656646967 0.0111618572846055 0.0256665665656328 0.0457032732665539 0.0663048252463341 0.070513516664505]</rmsgdt>
- <rmsdt>0.105966560542583</rmsdt>
- <dt>0.0605378448963165</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0026093/ses-1/sub-0026093_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 35s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 4s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 3s</item>
- <item>24s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 5s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 48s</item>
- <item>SPM preprocessing 1 (estimate 2): 38s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 12s</item>
- <item>Update Segmentation 14s</item>
- <item>Update Skull-Stripping 29s</item>
- <item>Update probability maps 6s</item>
- <item>61s</item>
- <item>Global intensity correction: 11s</item>
- <item>SANLM denoising after intensity normalization (medium): 19s</item>
- <item>Fast Optimized Shooting registration 22s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 1s</item>
- <item>Prepare segments (LASmod = 1.00) 10s</item>
- <item>Estimate local tissue thresholds (WM) 12s</item>
- <item>Estimate local tissue thresholds (GM) 18s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 26s</item>
- <item>73s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 12s</item>
- <item>Blood vessel detection 7s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.05) 14s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>46s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 27s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.67 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>8s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0826 0.0000 0.0826 | 32.0000</item>
- <item>2 | 2.50 | 0.0809 0.0009 0.0818 | 29.4886</item>
- <item>3 | 2.50 | 0.0804 0.0014 0.0818 | 26.9772</item>
- <item>4 | 2.50 | 0.0802 0.0015 0.0817 | 24.6107</item>
- <item>5 | 2.50 | 0.0800 0.0016 0.0816 | 22.6548</item>
- <item>6 | 2.50 | 0.0798 0.0017 0.0815 | 20.6989</item>
- <item>7 | 2.50 | 0.0796 0.0018 0.0814 | 18.9688</item>
- <item>8 | 2.50 | 0.0794 0.0018 0.0812 | 17.4455</item>
- <item>9 | 2.50 | 0.0792 0.0019 0.0811 | 15.9223</item>
- <item>10 | 2.50 | 0.0790 0.0020 0.0810 | 14.6627</item>
- <item>11 | 2.50 | 0.0788 0.0020 0.0808 | 13.4764</item>
- <item>12 | 2.50 | 0.0786 0.0020 0.0806 | 12.3015</item>
- <item>13 | 2.50 | 0.0784 0.0021 0.0805 | 11.3776</item>
- <item>14 | 2.50 | 0.0782 0.0022 0.0803 | 10.4537</item>
- <item>15 | 2.25 | 0.0774 0.0022 0.0796 | 9.5920</item>
- <item>16 | 2.25 | 0.0750 0.0034 0.0783 | 8.8725</item>
- <item>29 | 2.00 | 0.0770 0.0015 0.0785 | 3.3283</item>
- <item>30 | 2.00 | 0.0712 0.0038 0.0750 | 3.1221</item>
- <item>31 | 2.00 | 0.0692 0.0047 0.0740 | 2.9160</item>
- <item>43 | 1.75 | 0.0685 0.0027 0.0712 | 1.5785</item>
- <item>44 | 1.75 | 0.0640 0.0051 0.0690 | 1.5194</item>
- <item>45 | 1.75 | 0.0625 0.0059 0.0684 | 1.4626</item>
- <item>57 | 1.50 | 0.0612 0.0042 0.0655 | 1.0900</item>
- <item>58 | 1.50 | 0.0579 0.0064 0.0643 | 1.0730</item>
- <item>59 | 1.50 | 0.0568 0.0071 0.0639 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 110s</item>
- <item>Prepare output 7s</item>
- <item>117s</item>
- <item>Jacobian determinant (RMS): 0.009 0.031 0.048 0.073 0.099 | 0.105967</item>
- <item>Template Matching: 0.083 0.225 0.208 0.188 0.170 | 0.170361</item>
- <item>Write result maps: 25s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 33s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 33s</item>
- <item>81s</item>
- <item>Create initial surface 60s</item>
- <item>Topology correction: 73s</item>
- <item>Surface refinement: 70s</item>
- <item>Reduction of surface collisions with optimization: 58s</item>
- <item>Spherical mapping with areal smoothing 68s</item>
- <item>Spherical registration 190s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 23s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 32s</item>
- <item>70s</item>
- <item>Create initial surface 57s</item>
- <item>Topology correction: 71s</item>
- <item>Surface refinement: 63s</item>
- <item>Reduction of surface collisions with optimization: 55s</item>
- <item>Spherical mapping with areal smoothing 64s</item>
- <item>Spherical registration 199s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5077 0.6108 mm</item>
- <item>Surface intensity / position RMSE: 0.0680 / 0.0730</item>
- <item>Euler number / defect number / defect size: 26.0 / 13.0 / 1.01%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2388102/ds/IPCAS_7/sub-0026093/ses-1/surf/lh.thickness.sub-0026093_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2388102/ds/IPCAS_7/sub-0026093/ses-1/surf/rh.thickness.sub-0026093_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2388102/ds/IPCAS_7/sub-0026093/ses-1/sub-0026093_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1251s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 6s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 23s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 17s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 10s</item>
- <item>ROI estimation of 'mori' atlas 14s</item>
- <item>ROI estimation of 'anatomy3' atlas 21s</item>
- <item>ROI estimation of 'julichbrain' atlas 28s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 11s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 43s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 63s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 5s</item>
- <item>Write results 6s</item>
- <item>278s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2388102/ds/IPCAS_7/sub-0026093/ses-1/report/catreport_sub-0026093_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 35 minute(s) and 54 second(s).</item>
- <item>Image Quality Rating (IQR): 85.07% (B)</item>
- <item>GM volume (GMV): 49.55% (793.00 / 1600.32 ml)</item>
- <item>GM thickness (GMT): 2.51 0.61 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2388102/ds/IPCAS_7/sub-0026093/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2388102/ds/IPCAS_7/sub-0026093/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2388102/ds/IPCAS_7/sub-0026093/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|