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- <darteltpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <print>2</print>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_2671195/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <td>0</td>
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- <td>Destrieux</td>
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- <td>0</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>34</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12434318350772</SurfaceDefectArea>
- <SurfaceDefectNumber>21</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.070322722196579</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0743265151977539</SurfacePositionRMSE>
- <res_vx_vol>[0.999999979005464 1.00000001242248 0.999999989792115]</res_vx_vol>
- <res_vx_voli>[0.999999920138129 1.00000001268251 0.999999989689131]</res_vx_voli>
- <res_RMS>0.999999993740021</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[6.08099985122681 21.8859996795654 179.97900390625 369.455993652344]</tissue_mn>
- <tissue_mnr>[0.016459334641695 0.0592384487390518 0.487145990133286 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.5286267840335 59.2921327425823 45.3260230671578 36.1952164479703]</tissue_std>
- <tissue_stdr>[0.0124626811593771 0.163170650601387 0.124736219644547 0.0996084362268448]</tissue_stdr>
- <contrast>121.568023681641</contrast>
- <contrastr>0.329046010971069</contrastr>
- <res_ECR>0.349351584911346</res_ECR>
- <NCR>0.146946951746941</NCR>
- <ICR>0.312546014785767</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99999995801093 2.00000002484497 1.99999997958423]</res_vx_vol>
- <res_RMS>1.99999998748004</res_RMS>
- <res_ECR>2.68036508560181</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.14764308929443</contrastr>
- <NCR>2.44052481651306</NCR>
- <ICR>1.23498511314392</ICR>
- <SurfaceEulerNumber>2.63265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.28108579587693</SurfaceDefectArea>
- <SurfaceDefectNumber>2.05</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.40645444393158</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.48653030395508</SurfacePositionRMSE>
- <SIQR>2.47166299104611</SIQR>
- <IQR>2.2903730197278</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-013344</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>34</SurfaceEulerNumber>
- <SurfaceDefectArea>1.12434318350772</SurfaceDefectArea>
- <SurfaceDefectNumber>21</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.070322722196579</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0743265151977539</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>34</EC_abs>
- <defect_size>1.12434318350772</defect_size>
- <vol_abs_CGW>[253.72221955469 689.657930871966 463.452544479108 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.318447034146992</vol_abs_WMH>
- <vol_rel_WMH>0.000226357430631311</vol_rel_WMH>
- <surf_TSA>1894.05594603196</surf_TSA>
- <vol_TIV>1406.83269490576</vol_TIV>
- <vol_rel_CGW>[0.180349959503668 0.490220289426926 0.329429751069406 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.4700586929805 0.644746274084893]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.45284628868103 0.786973840574023 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.85259969550108 0.257429294720302 0.319451109583533;2.50249189331403 0.186458953838681 0.427659822829795;3.19849213322316 0.288194650390888 0.252889067586672]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.840118865792586 0.288075442792513 0.502699518994797;4.21639689959606 0.352566704238538 0.497300481005203]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00111220613781</vol_TIV>
- <vol_rel_CGW>[1.08890013476415 6.65410002562727 3.76633892006836 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02263574306313</vol_rel_WMH>
- <surf_TSA>8.61241979120775</surf_TSA>
- <SQR>5.44862639632396</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.3357833859 0.534848066704593]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00132952269632369 0.00117254408542067 0.113014027476311]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[881.012194475251 395.774816390138 514.61342286758 359.66348585508 948.093824571197 9134.63448431184]</SPMvols0>
- <SPMvols1>[728.863343520204 368.342536162931 280.23047240252 398.331459329278 823.741634207278 8934.92045665047]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[45.1682014465332 198.65739440918 379.335784912109]</T3th>
- <Tth>
- <T3th>[-5.85559988021851 -5.85559606552124 2.22465205192566 45.1682014465332 198.65739440918 379.335784912109 546.419555664062 1113.35388183594]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0171053502708673 0.0612818486988544 0.0675259381532669 0 0]</dtc>
- <ll>[0.0829007139965361 0 0.0829007139965361 0;0.207729655582936 0.00895660750719966 0.216686263090136 1909.97863769531;0.207729655582936 0.00895660750719966 0.216686263090136 1909.97863769531]</ll>
- <rmsdtc>[0.0392070300877094 0.0854203179478645 0.0974722281098366]</rmsdtc>
- <rmsgdt>[0.028165465220809 0.04478545114398 0.0565417185425758]</rmsgdt>
- <rmsdt>0.0974722281098366</rmsdt>
- <dt>0.0675259381532669</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0072413245216012 0.0267519485205412 0.0370062850415707 0.0463079959154129 0.0542356111109257 0.0604036934673786]</dtc>
- <ll>[0.0828353200098887 0 0.0828353200098887 0;0.22304474969475 0.0119070188492063 0.234951768543956 6094.9052734375;0.2080346678602 0.0150062330704851 0.223040900930685 10800.166015625;0.188198629381084 0.0180635171511687 0.206262146532253 19477.384765625;0.171496065259556 0.0216212883420327 0.193117353601589 37823.265625;0.171496065259556 0.0216212883420327 0.193117353601589 37823.265625]</ll>
- <rmsdtc>[0.00875531695783138 0.0312539301812649 0.0493841134011745 0.0754354894161224 0.10227719694376 0.109849080443382]</rmsdtc>
- <rmsgdt>[0.00286681670695543 0.0113980881869793 0.0268804617226124 0.0484304316341877 0.0680170804262161 0.0743231102824211]</rmsgdt>
- <rmsdt>0.109849080443382</rmsdt>
- <dt>0.0604036934673786</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0026047/ses-1/sub-0026047_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 34s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 5s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 5s</item>
- <item>37s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 10s</item>
- <item>Use initial fine affine registration. 54s</item>
- <item>SPM preprocessing 1 (estimate 2): 46s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 14s</item>
- <item>Update Segmentation 15s</item>
- <item>Update Skull-Stripping 35s</item>
- <item>Update probability maps 9s</item>
- <item>72s</item>
- <item>Global intensity correction: 13s</item>
- <item>SANLM denoising after intensity normalization (medium): 17s</item>
- <item>Fast Optimized Shooting registration 26s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 10s</item>
- <item>Estimate local tissue thresholds (WM) 14s</item>
- <item>Estimate local tissue thresholds (GM) 20s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 28s</item>
- <item>81s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 6s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 13s</item>
- <item>Blood vessel detection 7s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 15s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 4s</item>
- <item>50s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 26s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>9s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0828 0.0000 0.0828 | 32.0000</item>
- <item>2 | 2.50 | 0.0811 0.0009 0.0820 | 29.4886</item>
- <item>3 | 2.50 | 0.0805 0.0014 0.0819 | 26.9772</item>
- <item>4 | 2.50 | 0.0803 0.0015 0.0818 | 24.6107</item>
- <item>5 | 2.50 | 0.0800 0.0016 0.0817 | 22.6548</item>
- <item>6 | 2.50 | 0.0798 0.0017 0.0815 | 20.6989</item>
- <item>7 | 2.50 | 0.0797 0.0018 0.0814 | 18.9688</item>
- <item>8 | 2.50 | 0.0794 0.0018 0.0813 | 17.4455</item>
- <item>9 | 2.50 | 0.0792 0.0019 0.0811 | 15.9223</item>
- <item>10 | 2.50 | 0.0790 0.0020 0.0810 | 14.6627</item>
- <item>11 | 2.50 | 0.0788 0.0020 0.0808 | 13.4764</item>
- <item>12 | 2.50 | 0.0786 0.0021 0.0807 | 12.3015</item>
- <item>13 | 2.50 | 0.0783 0.0022 0.0805 | 11.3776</item>
- <item>14 | 2.50 | 0.0781 0.0022 0.0803 | 10.4537</item>
- <item>15 | 2.25 | 0.0778 0.0022 0.0801 | 9.5920</item>
- <item>16 | 2.25 | 0.0753 0.0035 0.0788 | 8.8725</item>
- <item>17 | 2.25 | 0.0743 0.0040 0.0783 | 8.1530</item>
- <item>29 | 2.00 | 0.0767 0.0018 0.0785 | 3.3283</item>
- <item>30 | 2.00 | 0.0712 0.0041 0.0753 | 3.1221</item>
- <item>31 | 2.00 | 0.0693 0.0050 0.0743 | 2.9160</item>
- <item>43 | 1.75 | 0.0686 0.0028 0.0715 | 1.5785</item>
- <item>44 | 1.75 | 0.0642 0.0052 0.0694 | 1.5194</item>
- <item>45 | 1.75 | 0.0627 0.0060 0.0688 | 1.4626</item>
- <item>57 | 1.50 | 0.0616 0.0043 0.0659 | 1.0900</item>
- <item>58 | 1.50 | 0.0582 0.0065 0.0647 | 1.0730</item>
- <item>59 | 1.50 | 0.0572 0.0072 0.0644 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 138s</item>
- <item>Prepare output 8s</item>
- <item>145s</item>
- <item>Jacobian determinant (RMS): 0.009 0.031 0.049 0.075 0.102 | 0.109849</item>
- <item>Template Matching: 0.083 0.223 0.208 0.188 0.171 | 0.171496</item>
- <item>Write result maps: 33s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 21s</item>
- <item>CSF distance: 11s</item>
- <item>PBT2x thickness: 32s</item>
- <item>69s</item>
- <item>Create initial surface 58s</item>
- <item>Topology correction: 74s</item>
- <item>Surface refinement: 74s</item>
- <item>Reduction of surface collisions with optimization: 49s</item>
- <item>Spherical mapping with areal smoothing 68s</item>
- <item>Spherical registration 222s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 22s</item>
- <item>CSF distance: 12s</item>
- <item>PBT2x thickness: 33s</item>
- <item>71s</item>
- <item>Create initial surface 59s</item>
- <item>Topology correction: 71s</item>
- <item>Surface refinement: 55s</item>
- <item>Reduction of surface collisions with optimization: 52s</item>
- <item>Spherical mapping with areal smoothing 87s</item>
- <item>Spherical registration 230s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4700 0.6446 mm</item>
- <item>Surface intensity / position RMSE: 0.0703 / 0.0743</item>
- <item>Euler number / defect number / defect size: 34.0 / 21.0 / 1.12%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2671195/ds/IPCAS_7/sub-0026047/ses-1/surf/lh.thickness.sub-0026047_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2671195/ds/IPCAS_7/sub-0026047/ses-1/surf/rh.thickness.sub-0026047_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2671195/ds/IPCAS_7/sub-0026047/ses-1/sub-0026047_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1314s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 27s</item>
- <item>ROI estimation of 'lpba40' atlas 8s</item>
- <item>ROI estimation of 'hammers' atlas 18s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 11s</item>
- <item>ROI estimation of 'mori' atlas 15s</item>
- <item>ROI estimation of 'anatomy3' atlas 22s</item>
- <item>ROI estimation of 'julichbrain' atlas 30s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 12s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 46s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 68s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 6s</item>
- <item>Write results 7s</item>
- <item>299s</item>
- <item>Quality check: 9s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2671195/ds/IPCAS_7/sub-0026047/ses-1/report/catreport_sub-0026047_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 39 minute(s) and 10 second(s).</item>
- <item>Image Quality Rating (IQR): 82.10% (B-)</item>
- <item>GM volume (GMV): 49.02% (689.66 / 1406.83 ml)</item>
- <item>GM thickness (GMT): 2.47 0.64 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2671195/ds/IPCAS_7/sub-0026047/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2671195/ds/IPCAS_7/sub-0026047/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2671195/ds/IPCAS_7/sub-0026047/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
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