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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_615525/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>Desikan</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
- <LAB>
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- <CT>1</CT>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>38</SurfaceEulerNumber>
- <SurfaceDefectArea>1.35772279226978</SurfaceDefectArea>
- <SurfaceDefectNumber>19.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0682623162865639</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0771323144435883</SurfacePositionRMSE>
- <res_vx_vol>[1.33000004291534 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1.12084791031237</res_RMS>
- <res_BB>NaN</res_BB>
- <tissue_mn>[3.03500008583069 40.726001739502 206.455001831055 360.623992919922]</tissue_mn>
- <tissue_mnr>[0.00841596815735102 0.112932033836842 0.5724937915802 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.06460034234318 39.1028249934515 42.8826645422606 31.0227532360851]</tissue_std>
- <tissue_stdr>[0.00857017561793327 0.109351314604282 0.119921661913395 0.0867553353309631]</tissue_stdr>
- <contrast>125.174896240234</contrast>
- <contrastr>0.347106397151947</contrastr>
- <res_ECR>0.429915547370911</res_ECR>
- <NCR>0.156534850597382</NCR>
- <ICR>0.325091034173965</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000008583069 2 2]</res_vx_vol>
- <res_RMS>2.24169582062474</res_RMS>
- <res_ECR>3.09140586853027</res_ECR>
- <res_BB>NaN</res_BB>
- <tissue_mn>[8.62192916870117 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.87673735618591</contrastr>
- <NCR>2.57816314697266</NCR>
- <ICR>1.26609873771667</ICR>
- <SurfaceEulerNumber>2.83673469387755</SurfaceEulerNumber>
- <SurfaceDefectArea>1.33943069806745</SurfaceDefectArea>
- <SurfaceDefectNumber>1.975</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.36524629592896</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.54264628887177</SurfacePositionRMSE>
- <SIQR>2.78736449648132</SIQR>
- <IQR>2.4492192136953</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-011128</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>38</SurfaceEulerNumber>
- <SurfaceDefectArea>1.35772279226978</SurfaceDefectArea>
- <SurfaceDefectNumber>19.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0682623162865639</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0771323144435883</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>38</EC_abs>
- <defect_size>1.35772279226978</defect_size>
- <vol_abs_CGW>[241.470984313725 726.276474509804 502.387368627451 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.484945098039216</vol_abs_WMH>
- <vol_rel_WMH>0.000329864369569454</vol_rel_WMH>
- <surf_TSA>2087.55444445282</surf_TSA>
- <vol_TIV>1470.13482745098</vol_TIV>
- <vol_rel_CGW>[0.164250910736129 0.49402031769363 0.34172877157024 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.47145347729437 0.627107117389895]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.47254943847656 0.713753548169224 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.85066078507181 0.241430946290293 0.301633792775665;2.49483313965948 0.180721264372155 0.420591730038023;3.14138863663537 0.263141428097715 0.277774477186312]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.883909451399953 0.320656823741871 0.505491720175735;4.04983619838703 0.322329752120769 0.494508279824265]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.11629653153701</vol_TIV>
- <vol_rel_CGW>[0.799764919829904 6.72234765972756 3.98722650090231 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03298643695695</vol_rel_WMH>
- <surf_TSA>8.6233482930246</surf_TSA>
- <SQR>5.50775960733101</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11156.849 0.419725638613588]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00187485897913575 0.0017965049482882 0.0249634589999914]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[904.997584313725 422.91182745098 486.869317647059 546.909694117647 1066.83968627451 8364.7960627451]</SPMvols0>
- <SPMvols1>[785.244752941177 394.971141176471 247.885525490196 443.121760784314 864.785247058823 8406.83385098039]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[58.2565002441406 231.732894897461 369.499908447266]</T3th>
- <Tth>
- <T3th>[-53.9927711486816 -53.9927673339844 2.13186645507812 58.2565002441406 231.732894897461 369.499908447266 525.12158203125 1008.85906982422]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0198343358933926 0.0697107911109924 0.0771342515945435 0 0]</dtc>
- <ll>[0.0842145696169093 0 0.0842145696169093 0;0.198234823714642 0.0105130537932947 0.208747877507937 2241.8876953125;0.198234823714642 0.0105130537932947 0.208747877507937 2241.8876953125]</ll>
- <rmsdtc>[0.0452543310821056 0.0949840694665909 0.106421194970608]</rmsdtc>
- <rmsgdt>[0.032702911645174 0.0456272661685944 0.0561760775744915]</rmsgdt>
- <rmsdt>0.106421194970608</rmsdt>
- <dt>0.0771342515945435</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0085082808509469 0.0321618095040321 0.0433801785111427 0.052445761859417 0.0596316084265709 0.0664739981293678]</dtc>
- <ll>[0.0859839946382032 0 0.0859839946382032 0;0.224954700854701 0.01530272245116 0.240257423305861 7833.0810546875;0.207596732269297 0.0177535654561304 0.225350297725427 12777.4541015625;0.186355793691202 0.0203212455466942 0.206677039237896 21911.830078125;0.168334967985307 0.0236483458098508 0.191983313795157 41369.3046875;0.168334967985307 0.0236483458098508 0.191983313795157 41369.3046875]</ll>
- <rmsdtc>[0.01003463473171 0.0361607521772385 0.0560429655015469 0.0808690786361694 0.10612977296114 0.110985174775124]</rmsdtc>
- <rmsgdt>[0.00317816319875419 0.0123840942978859 0.0277106389403343 0.0475706830620766 0.0703864470124245 0.0712977349758148]</rmsgdt>
- <rmsdt>0.110985174775124</rmsdt>
- <dt>0.0664739981293678</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025488/ses-2/sub-0025488_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 34s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 5s</item>
- <item>Refine background 3s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>34s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 65s</item>
- <item>SPM preprocessing 1 (estimate 2): 65s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 16s</item>
- <item>Update Segmentation 19s</item>
- <item>Update Skull-Stripping 42s</item>
- <item>Update probability maps 9s</item>
- <item>86s</item>
- <item>Global intensity correction: 16s</item>
- <item>SANLM denoising after intensity normalization (medium): 25s</item>
- <item>Fast Optimized Shooting registration 32s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.05) 14s</item>
- <item>Estimate local tissue thresholds (WM) 18s</item>
- <item>Estimate local tissue thresholds (GM) 26s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 40s</item>
- <item>107s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 18s</item>
- <item>Blood vessel detection 9s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 21s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>68s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 35s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0860 0.0000 0.0860 | 32.0000</item>
- <item>2 | 2.50 | 0.0832 0.0012 0.0845 | 29.4886</item>
- <item>3 | 2.50 | 0.0824 0.0019 0.0843 | 26.9772</item>
- <item>4 | 2.50 | 0.0820 0.0021 0.0841 | 24.6107</item>
- <item>5 | 2.50 | 0.0817 0.0022 0.0839 | 22.6548</item>
- <item>6 | 2.50 | 0.0814 0.0023 0.0837 | 20.6989</item>
- <item>7 | 2.50 | 0.0811 0.0024 0.0835 | 18.9688</item>
- <item>8 | 2.50 | 0.0808 0.0025 0.0833 | 17.4455</item>
- <item>9 | 2.50 | 0.0805 0.0026 0.0831 | 15.9223</item>
- <item>10 | 2.50 | 0.0802 0.0027 0.0828 | 14.6627</item>
- <item>11 | 2.50 | 0.0799 0.0027 0.0826 | 13.4764</item>
- <item>12 | 2.50 | 0.0795 0.0028 0.0823 | 12.3015</item>
- <item>13 | 2.50 | 0.0792 0.0029 0.0821 | 11.3776</item>
- <item>14 | 2.50 | 0.0789 0.0029 0.0818 | 10.4537</item>
- <item>15 | 2.25 | 0.0794 0.0030 0.0824 | 9.5920</item>
- <item>16 | 2.25 | 0.0762 0.0045 0.0808 | 8.8725</item>
- <item>17 | 2.25 | 0.0750 0.0051 0.0801 | 8.1530</item>
- <item>29 | 2.00 | 0.0775 0.0023 0.0798 | 3.3283</item>
- <item>30 | 2.00 | 0.0713 0.0049 0.0762 | 3.1221</item>
- <item>31 | 2.00 | 0.0692 0.0059 0.0751 | 2.9160</item>
- <item>43 | 1.75 | 0.0684 0.0034 0.0718 | 1.5785</item>
- <item>44 | 1.75 | 0.0637 0.0059 0.0696 | 1.5194</item>
- <item>45 | 1.75 | 0.0621 0.0068 0.0689 | 1.4626</item>
- <item>57 | 1.50 | 0.0607 0.0049 0.0657 | 1.0900</item>
- <item>58 | 1.50 | 0.0573 0.0072 0.0645 | 1.0730</item>
- <item>59 | 1.50 | 0.0561 0.0079 0.0640 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 169s</item>
- <item>Prepare output 10s</item>
- <item>179s</item>
- <item>Jacobian determinant (RMS): 0.010 0.036 0.056 0.081 0.106 | 0.110985</item>
- <item>Template Matching: 0.086 0.225 0.208 0.186 0.168 | 0.168335</item>
- <item>Write result maps: 53s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 27s</item>
- <item>CSF distance: 16s</item>
- <item>PBT2x thickness: 45s</item>
- <item>93s</item>
- <item>Create initial surface 83s</item>
- <item>Topology correction: 103s</item>
- <item>Surface refinement: 81s</item>
- <item>Reduction of surface collisions with optimization: 77s</item>
- <item>Spherical mapping with areal smoothing 84s</item>
- <item>Spherical registration 278s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 25s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 44s</item>
- <item>89s</item>
- <item>Create initial surface 82s</item>
- <item>Topology correction: 100s</item>
- <item>Surface refinement: 118s</item>
- <item>Reduction of surface collisions with optimization: 77s</item>
- <item>Spherical mapping with areal smoothing 85s</item>
- <item>Spherical registration 296s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4715 0.6267 mm</item>
- <item>Surface intensity / position RMSE: 0.0683 / 0.0771</item>
- <item>Euler number / defect number / defect size: 38.0 / 19.5 / 1.36%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_615525/ds/IPCAS_1/sub-0025488/ses-2/surf/lh.thickness.sub-0025488_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_615525/ds/IPCAS_1/sub-0025488/ses-2/surf/rh.thickness.sub-0025488_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_615525/ds/IPCAS_1/sub-0025488/ses-2/sub-0025488_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1745s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 9s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 33s</item>
- <item>ROI estimation of 'lpba40' atlas 10s</item>
- <item>ROI estimation of 'hammers' atlas 24s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 9s</item>
- <item>ROI estimation of 'aal3' atlas 16s</item>
- <item>ROI estimation of 'mori' atlas 24s</item>
- <item>ROI estimation of 'anatomy3' atlas 34s</item>
- <item>ROI estimation of 'julichbrain' atlas 49s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 40s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 75s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 102s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s</item>
- <item>Write results 10s</item>
- <item>457s</item>
- <item>Quality check: 12s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_615525/ds/IPCAS_1/sub-0025488/ses-2/report/catreport_sub-0025488_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 52 minute(s) and 0 second(s).</item>
- <item>Image Quality Rating (IQR): 80.51% (B-)</item>
- <item>GM volume (GMV): 49.40% (726.28 / 1470.13 ml)</item>
- <item>GM thickness (GMT): 2.47 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_615525/ds/IPCAS_1/sub-0025488/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_615525/ds/IPCAS_1/sub-0025488/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_615525/ds/IPCAS_1/sub-0025488/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|