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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <pbtres>0.5</pbtres>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_3344799/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>0.996933888203413</SurfaceDefectArea>
- <SurfaceDefectNumber>12.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0689930468797684</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.08492261916399</SurfacePositionRMSE>
- <res_vx_vol>[0.999900817871094 1 1]</res_vx_vol>
- <res_vx_voli>[0.999900817871094 1 1]</res_vx_voli>
- <res_RMS>0.999966940383411</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[0 18.2840003967285 179.908996582031 356.286987304688]</tissue_mn>
- <tissue_mnr>[0 0.0513181835412979 0.504955291748047 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.17853198545856 33.3121906044089 45.8162591808866 32.1609702087748]</tissue_std>
- <tissue_stdr>[0.00892126839607954 0.0934981927275658 0.128593698143959 0.0902670323848724]</tissue_stdr>
- <contrast>119.115432739258</contrast>
- <contrastr>0.334324389696121</contrastr>
- <res_ECR>0.374051868915558</res_ECR>
- <NCR>0.140256062150002</NCR>
- <ICR>0.30484876036644</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.99980163574219 2 2]</res_vx_vol>
- <res_RMS>1.99993388076682</res_RMS>
- <res_ECR>2.80638694763184</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.06846737861633</contrastr>
- <NCR>2.34447407722473</NCR>
- <ICR>1.21589469909668</ICR>
- <SurfaceEulerNumber>2.02040816326531</SurfaceEulerNumber>
- <SurfaceDefectArea>1.24923347205085</SurfaceDefectArea>
- <SurfaceDefectNumber>1.625</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.37986087799072</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.69845235347748</SurfacePositionRMSE>
- <SIQR>2.52875609807745</SIQR>
- <IQR>2.21735099583527</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-021247</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>22</SurfaceEulerNumber>
- <SurfaceDefectArea>0.996933888203413</SurfaceDefectArea>
- <SurfaceDefectNumber>12.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0689930468797684</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.08492261916399</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>22</EC_abs>
- <defect_size>0.996933888203413</defect_size>
- <vol_abs_CGW>[249.771659951872 739.555049923048 556.458929234464 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.732221487157485</vol_abs_WMH>
- <vol_rel_WMH>0.000473688892322328</vol_rel_WMH>
- <surf_TSA>2109.63881799519</surf_TSA>
- <vol_TIV>1545.78563910938</vol_TIV>
- <vol_rel_CGW>[0.16158233951234 0.478433122427731 0.359984538059929 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.38699230465028 0.646906294507271]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.36108040809631 0.800184557010545 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.77009870361427 0.279979491771437 0.316599795267623;2.40639407151079 0.188065728235319 0.428073044746967;3.12711486235832 0.293471791567449 0.25532715998541]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.732851714882462 0.259413499100444 0.549022983558578;4.1306662574072 0.354011331916523 0.450977016441422]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.48991410517915</vol_TIV>
- <vol_rel_CGW>[0.751837994115303 6.44240521601528 4.31509587032919 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04736888923223</vol_rel_WMH>
- <surf_TSA>8.62354617615527</surf_TSA>
- <SQR>5.29459151965701</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11533.192 0.449932638030723]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00135312566999346 0.00108568300493062 0.0419662669301033]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[951.717773712607 462.827957851156 510.770304316293 501.922703495848 978.868590373619 8756.85495503836]</SPMvols0>
- <SPMvols1>[793.260840387112 434.744174909375 265.682618967453 434.778026453534 875.434732534371 8729.55969388155]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[38.5541000366211 196.233306884766 368.725494384766]</T3th>
- <Tth>
- <T3th>[-4.19325017929077 -4.19324588775635 2.4718644618988 38.5541000366211 196.233306884766 368.725494384766 533.811157226562 899.633972167969]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0214251689612865 0.0756286457180977 0.0835617929697037 0 0]</dtc>
- <ll>[0.0852889068224946 0 0.0852889068224946 0;0.202286096323295 0.00986908664222525 0.21215518296552 2104.56298828125;0.202286096323295 0.00986908664222525 0.21215518296552 2104.56298828125]</ll>
- <rmsdtc>[0.0486927554011345 0.0994650945067406 0.11014062911272]</rmsdtc>
- <rmsgdt>[0.0348468534648418 0.0451556593179703 0.0558110773563385]</rmsgdt>
- <rmsdt>0.11014062911272</rmsdt>
- <dt>0.0835617929697037</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00961179099977016 0.0341722555458546 0.0469145402312279 0.0540606826543808 0.0598988868296146 0.0669510215520859]</dtc>
- <ll>[0.0844051224696503 0 0.0844051224696503 0;0.223131547619048 0.0127824013659951 0.235913948985043 6542.99169921875;0.203647192383898 0.0155579565810699 0.219205148964968 11197.248046875;0.183830645236081 0.0179434556227464 0.201774100858828 19347.92578125;0.16714699305972 0.0210820755945198 0.18822906865424 36879.9921875;0.16714699305972 0.0210820755945198 0.18822906865424 36879.9921875]</ll>
- <rmsdtc>[0.0113589344546199 0.0399744771420956 0.0581489726901054 0.0807504877448082 0.102838195860386 0.109406761825085]</rmsdtc>
- <rmsgdt>[0.00316272140480578 0.0120077785104513 0.0261193718761206 0.0458676889538765 0.0638502165675163 0.0694702044129372]</rmsgdt>
- <rmsdt>0.109406761825085</rmsdt>
- <dt>0.0669510215520859</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0027241/ses-2/sub-0027241_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 64s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 7s</item>
- <item>Initial correction 7s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 6s</item>
- <item>43s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 84s</item>
- <item>SPM preprocessing 1 (estimate 2): 82s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 21s</item>
- <item>Update Segmentation 24s</item>
- <item>Update Skull-Stripping 51s</item>
- <item>Update probability maps 10s</item>
- <item>106s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 34s</item>
- <item>Fast Optimized Shooting registration 43s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.00) 18s</item>
- <item>Estimate local tissue thresholds (WM) 24s</item>
- <item>Estimate local tissue thresholds (GM) 38s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 53s</item>
- <item>144s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 22s</item>
- <item>Blood vessel detection 13s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.01) 30s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>90s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 45s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.67 0.08,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>15s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0844 0.0000 0.0844 | 32.0000</item>
- <item>2 | 2.50 | 0.0818 0.0012 0.0830 | 29.4886</item>
- <item>3 | 2.50 | 0.0811 0.0018 0.0828 | 26.9772</item>
- <item>4 | 2.50 | 0.0807 0.0020 0.0827 | 24.6107</item>
- <item>5 | 2.50 | 0.0804 0.0021 0.0825 | 22.6548</item>
- <item>6 | 2.50 | 0.0802 0.0022 0.0824 | 20.6989</item>
- <item>7 | 2.50 | 0.0799 0.0023 0.0822 | 18.9688</item>
- <item>8 | 2.50 | 0.0796 0.0024 0.0820 | 17.4455</item>
- <item>9 | 2.50 | 0.0793 0.0025 0.0818 | 15.9223</item>
- <item>10 | 2.50 | 0.0790 0.0026 0.0816 | 14.6627</item>
- <item>11 | 2.50 | 0.0788 0.0026 0.0814 | 13.4764</item>
- <item>12 | 2.50 | 0.0785 0.0027 0.0812 | 12.3015</item>
- <item>13 | 2.50 | 0.0781 0.0028 0.0809 | 11.3776</item>
- <item>14 | 2.50 | 0.0779 0.0028 0.0807 | 10.4537</item>
- <item>15 | 2.25 | 0.0771 0.0029 0.0800 | 9.5920</item>
- <item>16 | 2.25 | 0.0744 0.0043 0.0786 | 8.8725</item>
- <item>29 | 2.00 | 0.0758 0.0019 0.0777 | 3.3283</item>
- <item>30 | 2.00 | 0.0699 0.0042 0.0741 | 3.1221</item>
- <item>31 | 2.00 | 0.0679 0.0052 0.0731 | 2.9160</item>
- <item>43 | 1.75 | 0.0669 0.0030 0.0699 | 1.5785</item>
- <item>44 | 1.75 | 0.0627 0.0052 0.0679 | 1.5194</item>
- <item>45 | 1.75 | 0.0613 0.0060 0.0673 | 1.4626</item>
- <item>57 | 1.50 | 0.0599 0.0043 0.0642 | 1.0900</item>
- <item>58 | 1.50 | 0.0568 0.0064 0.0631 | 1.0730</item>
- <item>59 | 1.50 | 0.0557 0.0070 0.0627 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 202s</item>
- <item>Prepare output 14s</item>
- <item>216s</item>
- <item>Jacobian determinant (RMS): 0.011 0.040 0.058 0.081 0.103 | 0.109407</item>
- <item>Template Matching: 0.084 0.223 0.204 0.184 0.167 | 0.167147</item>
- <item>Write result maps: 41s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 48s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 62s</item>
- <item>139s</item>
- <item>Create initial surface 108s</item>
- <item>Topology correction: 122s</item>
- <item>Surface refinement: 96s</item>
- <item>Reduction of surface collisions with optimization: 88s</item>
- <item>Spherical mapping with areal smoothing 111s</item>
- <item>Spherical registration 334s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 42s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 60s</item>
- <item>129s</item>
- <item>Create initial surface 103s</item>
- <item>Topology correction: 119s</item>
- <item>Surface refinement: 104s</item>
- <item>Reduction of surface collisions with optimization: 87s</item>
- <item>Spherical mapping with areal smoothing 112s</item>
- <item>Spherical registration 342s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.3870 0.6468 mm</item>
- <item>Surface intensity / position RMSE: 0.0690 / 0.0849</item>
- <item>Euler number / defect number / defect size: 22.0 / 12.5 / 1.00%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3344799/ds/IBA_TRT/sub-0027241/ses-2/surf/lh.thickness.sub-0027241_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3344799/ds/IBA_TRT/sub-0027241/ses-2/surf/rh.thickness.sub-0027241_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3344799/ds/IBA_TRT/sub-0027241/ses-2/sub-0027241_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 2114s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 10s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 39s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 27s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 10s</item>
- <item>ROI estimation of 'aal3' atlas 15s</item>
- <item>ROI estimation of 'mori' atlas 23s</item>
- <item>ROI estimation of 'anatomy3' atlas 33s</item>
- <item>ROI estimation of 'julichbrain' atlas 42s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 69s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 107s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 10s</item>
- <item>Write results 11s</item>
- <item>446s</item>
- <item>Quality check: 16s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3344799/ds/IBA_TRT/sub-0027241/ses-2/report/catreport_sub-0027241_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 61 minute(s) and 56 second(s).</item>
- <item>Image Quality Rating (IQR): 82.83% (B-)</item>
- <item>GM volume (GMV): 47.84% (739.56 / 1545.79 ml)</item>
- <item>GM thickness (GMT): 2.39 0.65 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3344799/ds/IBA_TRT/sub-0027241/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3344799/ds/IBA_TRT/sub-0027241/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3344799/ds/IBA_TRT/sub-0027241/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|