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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_1015018/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
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- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>52</SurfaceEulerNumber>
- <SurfaceDefectArea>1.8619429510195</SurfaceDefectArea>
- <SurfaceDefectNumber>20</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0784619152545929</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0866452604532242</SurfacePositionRMSE>
- <res_vx_vol>[0.938000023365021 0.938000023365021 1]</res_vx_vol>
- <res_vx_voli>[0.937999963760376 0.938000023365021 1]</res_vx_voli>
- <res_RMS>0.95911210461648</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[0 7.45800018310547 36.5040016174316 72.6589965820312]</tissue_mn>
- <tissue_mnr>[0 0.102643862366676 0.502401649951935 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[0.738540877184757 8.66753247406453 9.32586040921967 6.89232715748584]</tissue_std>
- <tissue_stdr>[0.0101644797250628 0.119290560483932 0.128351077437401 0.0948585495352745]</tissue_stdr>
- <contrast>24.254566192627</contrast>
- <contrastr>0.333813667297363</contrastr>
- <res_ECR>0.320242524147034</res_ECR>
- <NCR>0.20197656750679</NCR>
- <ICR>0.300757467746735</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.87600004673004 1.87600004673004 2]</res_vx_vol>
- <res_RMS>1.91822420923296</res_RMS>
- <res_ECR>2.53184938430786</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.57736385905113 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.07612824440002</contrastr>
- <NCR>3.23049902915955</NCR>
- <ICR>1.20574772357941</ICR>
- <SurfaceEulerNumber>3.55102040816327</SurfaceEulerNumber>
- <SurfaceDefectArea>1.46548573775488</SurfaceDefectArea>
- <SurfaceDefectNumber>2</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.56923830509186</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.73290514945984</SurfacePositionRMSE>
- <SIQR>2.86802978887849</SIQR>
- <IQR>2.96806489120088</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-000034</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>52</SurfaceEulerNumber>
- <SurfaceDefectArea>1.8619429510195</SurfaceDefectArea>
- <SurfaceDefectNumber>20</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0784619152545929</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0866452604532242</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>52</EC_abs>
- <defect_size>1.8619429510195</defect_size>
- <vol_abs_CGW>[141.815962512865 637.498531558725 395.387089542035 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.253129390141336</vol_abs_WMH>
- <vol_rel_WMH>0.000215483994975692</vol_rel_WMH>
- <surf_TSA>1692.18149992295</surf_TSA>
- <vol_TIV>1174.70158361362</vol_TIV>
- <vol_rel_CGW>[0.120725096902151 0.54268976942863 0.336585133669219 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.58082924408765 0.661800758139174]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.60218143463135 0.791607904340979 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.91496967684675 0.266865078577267 0.282196677647718;2.60241654427961 0.192375164753758 0.414452933342679;3.29150337150426 0.275141980086857 0.303350389009603]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.845747594893888 0.311085581067016 0.628928110202325;4.21138653995819 0.354611876847713 0.371071889797675]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>2.11830390788244</vol_TIV>
- <vol_rel_CGW>[0.5 7.59643982450844 3.89484794664546 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02154839949757</vol_rel_WMH>
- <surf_TSA>8.49103215442399</surf_TSA>
- <SQR>6.21580663235397</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 12685.5210364575 0.455970967650854]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00139636895619333 0.00137089542113245 0.0178547948598862]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[758.105785735319 349.248222631538 257.198468464105 567.651540365855 1218.9801808538 10064.0480650519]</SPMvols0>
- <SPMvols1>[670.4673864538 329.542298177747 134.611140919347 404.778423506232 806.577067302273 10339.6683653487]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[9.00479984283447 40.6453018188477 72.2012023925781]</T3th>
- <Tth>
- <T3th>[-0.819480001926422 -0.819482386112213 0.0990520417690277 9.00479984283447 40.6453018188477 72.2012023925781 103.799407958984 138.567840576172]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.022585891187191 0.07491235435009 0.0827434509992599 0 0]</dtc>
- <ll>[0.0824946983187806 0 0.0824946983187806 0;0.190100350442912 0.0100723165853255 0.200172667028237 2147.9013671875;0.190100350442912 0.0100723165853255 0.200172667028237 2147.9013671875]</ll>
- <rmsdtc>[0.0459416657686234 0.098672091960907 0.109735272824764]</rmsdtc>
- <rmsgdt>[0.0322583094239235 0.0457809530198574 0.0570016093552113]</rmsgdt>
- <rmsdt>0.109735272824764</rmsdt>
- <dt>0.0827434509992599</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.010515745729208 0.0377757474780083 0.0519445575773716 0.0602087117731571 0.0670013278722763 0.0762021467089653]</dtc>
- <ll>[0.0827437385899951 0 0.0827437385899951 0;0.214435286935287 0.0144488038003663 0.228884090735653 7395.9814453125;0.192706162326042 0.0167665129202723 0.209472675246314 12067.060546875;0.173286720558449 0.018516786870567 0.191803507429016 19966.1328125;0.157641246506566 0.0214970080188218 0.179138254525387 37605.85546875;0.157641246506566 0.0214970080188218 0.179138254525387 37605.85546875]</ll>
- <rmsdtc>[0.012201108969748 0.0434663146734238 0.0646802708506584 0.0916788652539253 0.11891932785511 0.126860201358795]</rmsdtc>
- <rmsgdt>[0.00347684090957046 0.0135585758835077 0.0300041940063238 0.0525270700454712 0.0748181492090225 0.0814424082636833]</rmsgdt>
- <rmsdt>0.126860201358795</rmsdt>
- <dt>0.0762021467089653</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0027428/ses-2/sub-0027428_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 37s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 7s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 5s</item>
- <item>45s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 13s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 13s</item>
- <item>Use initial fine affine registration. 5s</item>
- <item>Use previous fine affine registration. 67s</item>
- <item>SPM preprocessing 1 (estimate 2): 79s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 20s</item>
- <item>Update Segmentation 19s</item>
- <item>Update Skull-Stripping 48s</item>
- <item>Update probability maps 11s</item>
- <item>97s</item>
- <item>Global intensity correction: 20s</item>
- <item>SANLM denoising after intensity normalization (medium): 23s</item>
- <item>Fast Optimized Shooting registration 34s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 5s</item>
- <item>Prepare segments (LASmod = 1.00) 13s</item>
- <item>Estimate local tissue thresholds (WM) 21s</item>
- <item>Estimate local tissue thresholds (GM) 29s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 46s</item>
- <item>122s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 10s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 23s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 5s</item>
- <item>62s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 31s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0827 0.0000 0.0827 | 32.0000</item>
- <item>2 | 2.50 | 0.0796 0.0013 0.0809 | 29.4886</item>
- <item>3 | 2.50 | 0.0788 0.0020 0.0807 | 26.9772</item>
- <item>4 | 2.50 | 0.0783 0.0022 0.0805 | 24.6107</item>
- <item>5 | 2.50 | 0.0780 0.0024 0.0804 | 22.6548</item>
- <item>6 | 2.50 | 0.0777 0.0025 0.0801 | 20.6989</item>
- <item>7 | 2.50 | 0.0774 0.0026 0.0799 | 18.9688</item>
- <item>8 | 2.50 | 0.0770 0.0027 0.0797 | 17.4455</item>
- <item>9 | 2.50 | 0.0767 0.0027 0.0795 | 15.9223</item>
- <item>10 | 2.50 | 0.0764 0.0029 0.0792 | 14.6627</item>
- <item>11 | 2.50 | 0.0760 0.0029 0.0790 | 13.4764</item>
- <item>12 | 2.50 | 0.0757 0.0030 0.0787 | 12.3015</item>
- <item>13 | 2.50 | 0.0753 0.0031 0.0784 | 11.3776</item>
- <item>14 | 2.50 | 0.0750 0.0032 0.0782 | 10.4537</item>
- <item>15 | 2.25 | 0.0747 0.0033 0.0779 | 9.5920</item>
- <item>16 | 2.25 | 0.0715 0.0048 0.0763 | 8.8725</item>
- <item>29 | 2.00 | 0.0723 0.0022 0.0745 | 3.3283</item>
- <item>30 | 2.00 | 0.0663 0.0046 0.0709 | 3.1221</item>
- <item>31 | 2.00 | 0.0642 0.0056 0.0698 | 2.9160</item>
- <item>43 | 1.75 | 0.0633 0.0032 0.0665 | 1.5785</item>
- <item>44 | 1.75 | 0.0591 0.0054 0.0645 | 1.5194</item>
- <item>45 | 1.75 | 0.0578 0.0062 0.0639 | 1.4626</item>
- <item>57 | 1.50 | 0.0566 0.0045 0.0611 | 1.0900</item>
- <item>58 | 1.50 | 0.0535 0.0065 0.0600 | 1.0730</item>
- <item>59 | 1.50 | 0.0525 0.0072 0.0597 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 171s</item>
- <item>Prepare output 11s</item>
- <item>183s</item>
- <item>Jacobian determinant (RMS): 0.012 0.043 0.065 0.092 0.119 | 0.126860</item>
- <item>Template Matching: 0.083 0.214 0.193 0.173 0.158 | 0.157641</item>
- <item>Write result maps: 45s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 24s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 40s</item>
- <item>83s</item>
- <item>Create initial surface 75s</item>
- <item>Topology correction: 77s</item>
- <item>Surface refinement: 79s</item>
- <item>Reduction of surface collisions with optimization: 58s</item>
- <item>Spherical mapping with areal smoothing 71s</item>
- <item>Spherical registration 292s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 22s</item>
- <item>CSF distance: 12s</item>
- <item>PBT2x thickness: 37s</item>
- <item>76s</item>
- <item>Create initial surface 72s</item>
- <item>Topology correction: 71s</item>
- <item>Surface refinement: 61s</item>
- <item>Reduction of surface collisions with optimization: 59s</item>
- <item>Spherical mapping with areal smoothing 72s</item>
- <item>Spherical registration 290s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5809 0.6616 mm</item>
- <item>Surface intensity / position RMSE: 0.0785 / 0.0866</item>
- <item>Euler number / defect number / defect size: 52.0 / 20.0 / 1.86%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1015018/ds/DC_1/sub-0027428/ses-2/surf/lh.thickness.sub-0027428_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1015018/ds/DC_1/sub-0027428/ses-2/surf/rh.thickness.sub-0027428_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_1015018/ds/DC_1/sub-0027428/ses-2/sub-0027428_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1531s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 10s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 36s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 26s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 9s</item>
- <item>ROI estimation of 'aal3' atlas 15s</item>
- <item>ROI estimation of 'mori' atlas 22s</item>
- <item>ROI estimation of 'anatomy3' atlas 33s</item>
- <item>ROI estimation of 'julichbrain' atlas 48s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 20s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 36s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 80s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 16s</item>
- <item>Write results 18s</item>
- <item>505s</item>
- <item>Quality check: 17s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_1015018/ds/DC_1/sub-0027428/ses-2/report/catreport_sub-0027428_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 51 minute(s) and 14 second(s).</item>
- <item>Image Quality Rating (IQR): 75.32% (C)</item>
- <item>GM volume (GMV): 54.27% (637.50 / 1174.70 ml)</item>
- <item>GM thickness (GMT): 2.58 0.66 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_1015018/ds/DC_1/sub-0027428/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_1015018/ds/DC_1/sub-0027428/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_1015018/ds/DC_1/sub-0027428/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|