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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <fontsize>10</fontsize>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>/var/lib/condor/execute/dir_3676058/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <td>0</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <td>HCP</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
- </tr>
- </satlas>
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- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>18</SurfaceEulerNumber>
- <SurfaceDefectArea>0.907783101329895</SurfaceDefectArea>
- <SurfaceDefectNumber>11</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0705481171607971</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0765132755041122</SurfacePositionRMSE>
- <res_vx_vol>[0.938000023365021 0.938000023365021 1]</res_vx_vol>
- <res_vx_voli>[0.937999963760376 0.938000023365021 1]</res_vx_voli>
- <res_RMS>0.95911210461648</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[0 10.3979997634888 53.0909996032715 106.639999389648]</tissue_mn>
- <tissue_mnr>[0 0.097505621612072 0.497852593660355 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[0.852341534112283 9.96513988029184 13.8114725515563 10.0439465297212]</tissue_std>
- <tissue_stdr>[0.0079926997423172 0.0934465453028679 0.129514932632446 0.094185546040535]</tissue_stdr>
- <contrast>35.5008659362793</contrast>
- <contrastr>0.332903832197189</contrastr>
- <res_ECR>0.305711030960083</res_ECR>
- <NCR>0.194764629006386</NCR>
- <ICR>0.311589032411575</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.87600004673004 1.87600004673004 2]</res_vx_vol>
- <res_RMS>1.91822420923296</res_RMS>
- <res_ECR>2.45770931243896</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.61755158640718 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.08977580070496</contrastr>
- <NCR>3.12696838378906</NCR>
- <ICR>1.23261165618896</ICR>
- <SurfaceEulerNumber>1.81632653061224</SurfaceEulerNumber>
- <SurfaceDefectArea>1.22694577533247</SurfaceDefectArea>
- <SurfaceDefectNumber>1.55</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.41096234321594</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.53026556968689</SurfacePositionRMSE>
- <SIQR>2.77847206204377</SIQR>
- <IQR>2.87456842526477</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-000603</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>18</SurfaceEulerNumber>
- <SurfaceDefectArea>0.907783101329895</SurfaceDefectArea>
- <SurfaceDefectNumber>11</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0705481171607971</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0765132755041122</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>18</EC_abs>
- <defect_size>0.907783101329895</defect_size>
- <vol_abs_CGW>[156.495631544978 665.480810270792 452.996920719903 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.448120069708111</vol_abs_WMH>
- <vol_rel_WMH>0.000351474064381147</vol_rel_WMH>
- <surf_TSA>1835.40826036355</surf_TSA>
- <vol_TIV>1274.97336253567</vol_TIV>
- <vol_rel_CGW>[0.122744236188385 0.52195663833108 0.355299125480536 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.48944128200659 0.588415222313355]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.50012183189392 0.684977313855804 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.95018881671498 0.22850751730312 0.307371978233971;2.53357388576811 0.166348681292188 0.418630177081809;3.14188056904246 0.239555474961212 0.27399784468422]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.887428586555017 0.383124340434654 0.623902837313738;3.94984755173144 0.311939394942315 0.376097162686262]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.36347435857774</vol_TIV>
- <vol_rel_CGW>[0.5 7.22407755623347 4.23094693750962 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03514740643811</vol_rel_WMH>
- <surf_TSA>8.59903554836621</surf_TSA>
- <SQR>5.91776216508406</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 12685.5210364575 0.469344580458352]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00146843364927918 0.00141171226277947 0.0253794211894274]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[824.935319193103 380.865443940522 282.555441082058 576.247409105754 907.717110775289 10252.1500181915]</SPMvols0>
- <SPMvols1>[717.264963229922 358.655197116508 145.512977240537 424.217268729712 732.990487283821 10307.0521691758]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[13.3816003799438 59.6921997070312 107.822799682617]</T3th>
- <Tth>
- <T3th>[-1.2190899848938 -1.21908760070801 0.216328471899033 13.3816003799438 59.6921997070312 107.822799682617 155.043395996094 198.618515014648]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0215215422213078 0.0782704278826714 0.0869373455643654 0 0]</dtc>
- <ll>[0.0824854233685662 0 0.0824854233685662 0;0.192040030123377 0.0104991448025744 0.202539174925952 2238.92163085938;0.192040030123377 0.0104991448025744 0.202539174925952 2238.92163085938]</ll>
- <rmsdtc>[0.046547781676054 0.104411609470844 0.116012029349804]</rmsdtc>
- <rmsgdt>[0.0332133919000626 0.0472251921892166 0.0583537742495537]</rmsgdt>
- <rmsdt>0.116012029349804</rmsdt>
- <dt>0.0869373455643654</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0102207064628601 0.0378590747714043 0.0530416443943977 0.0611382275819778 0.0676484107971191 0.0771870315074921]</dtc>
- <ll>[0.0825816087020304 0 0.0825816087020304 0;0.218496825396825 0.0138210451007326 0.232317870497558 7074.6474609375;0.197116172858032 0.0171830668031101 0.214299239661142 12366.859375;0.176272835147347 0.0193944353210507 0.195667270468398 20912.4765625;0.159303289559054 0.0224269277162757 0.18173021727533 39232.61328125;0.159303289559054 0.0224269277162757 0.18173021727533 39232.61328125]</ll>
- <rmsdtc>[0.011963146738708 0.0437192283570766 0.065823920071125 0.0942234992980957 0.121621981263161 0.130016967654228]</rmsdtc>
- <rmsgdt>[0.00342177250422537 0.0136661445721984 0.0302583687007427 0.0533198080956936 0.0737495496869087 0.0799274742603302]</rmsgdt>
- <rmsdt>0.130016967654228</rmsdt>
- <dt>0.0771870315074921</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0027368/ses-2/sub-0027368_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 44s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 5s</item>
- <item>45s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 12s</item>
- <item>Use initial fine affine registration. 74s</item>
- <item>SPM preprocessing 1 (estimate 2): 81s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 20s</item>
- <item>Update Segmentation 20s</item>
- <item>Update Skull-Stripping 50s</item>
- <item>Update probability maps 11s</item>
- <item>102s</item>
- <item>Global intensity correction: 20s</item>
- <item>SANLM denoising after intensity normalization (medium): 26s</item>
- <item>Fast Optimized Shooting registration 35s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.00) 14s</item>
- <item>Estimate local tissue thresholds (WM) 21s</item>
- <item>Estimate local tissue thresholds (GM) 30s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 47s</item>
- <item>124s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 13s</item>
- <item>Blood vessel detection 9s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 24s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 5s</item>
- <item>68s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 33s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.67 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0826 0.0000 0.0826 | 32.0000</item>
- <item>2 | 2.50 | 0.0800 0.0012 0.0811 | 29.4886</item>
- <item>3 | 2.50 | 0.0792 0.0018 0.0810 | 26.9772</item>
- <item>4 | 2.50 | 0.0788 0.0020 0.0808 | 24.6107</item>
- <item>5 | 2.50 | 0.0785 0.0022 0.0807 | 22.6548</item>
- <item>6 | 2.50 | 0.0782 0.0023 0.0805 | 20.6989</item>
- <item>7 | 2.50 | 0.0780 0.0024 0.0803 | 18.9688</item>
- <item>8 | 2.50 | 0.0777 0.0025 0.0801 | 17.4455</item>
- <item>9 | 2.50 | 0.0774 0.0026 0.0799 | 15.9223</item>
- <item>10 | 2.50 | 0.0770 0.0027 0.0797 | 14.6627</item>
- <item>11 | 2.50 | 0.0767 0.0028 0.0795 | 13.4764</item>
- <item>12 | 2.50 | 0.0764 0.0028 0.0793 | 12.3015</item>
- <item>13 | 2.50 | 0.0761 0.0030 0.0790 | 11.3776</item>
- <item>14 | 2.50 | 0.0758 0.0030 0.0788 | 10.4537</item>
- <item>15 | 2.25 | 0.0758 0.0031 0.0789 | 9.5920</item>
- <item>16 | 2.25 | 0.0728 0.0046 0.0774 | 8.8725</item>
- <item>29 | 2.00 | 0.0743 0.0021 0.0764 | 3.3283</item>
- <item>30 | 2.00 | 0.0679 0.0046 0.0726 | 3.1221</item>
- <item>31 | 2.00 | 0.0657 0.0057 0.0714 | 2.9160</item>
- <item>43 | 1.75 | 0.0647 0.0033 0.0680 | 1.5785</item>
- <item>44 | 1.75 | 0.0603 0.0056 0.0659 | 1.5194</item>
- <item>45 | 1.75 | 0.0588 0.0065 0.0652 | 1.4626</item>
- <item>57 | 1.50 | 0.0574 0.0047 0.0621 | 1.0900</item>
- <item>58 | 1.50 | 0.0542 0.0068 0.0610 | 1.0730</item>
- <item>59 | 1.50 | 0.0531 0.0075 0.0606 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 172s</item>
- <item>Prepare output 11s</item>
- <item>184s</item>
- <item>Jacobian determinant (RMS): 0.012 0.044 0.066 0.094 0.122 | 0.130017</item>
- <item>Template Matching: 0.083 0.218 0.197 0.176 0.159 | 0.159303</item>
- <item>Write result maps: 46s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 41s</item>
- <item>88s</item>
- <item>Create initial surface 77s</item>
- <item>Topology correction: 86s</item>
- <item>Surface refinement: 75s</item>
- <item>Reduction of surface collisions with optimization: 64s</item>
- <item>Spherical mapping with areal smoothing 76s</item>
- <item>Spherical registration 280s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 23s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 39s</item>
- <item>80s</item>
- <item>Create initial surface 76s</item>
- <item>Topology correction: 88s</item>
- <item>Surface refinement: 79s</item>
- <item>Reduction of surface collisions with optimization: 64s</item>
- <item>Spherical mapping with areal smoothing 75s</item>
- <item>Spherical registration 295s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4895 0.5882 mm</item>
- <item>Surface intensity / position RMSE: 0.0705 / 0.0765</item>
- <item>Euler number / defect number / defect size: 18.0 / 11.0 / 0.91%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3676058/ds/DC_1/sub-0027368/ses-2/surf/lh.thickness.sub-0027368_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3676058/ds/DC_1/sub-0027368/ses-2/surf/rh.thickness.sub-0027368_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3676058/ds/DC_1/sub-0027368/ses-2/sub-0027368_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1601s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 10s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 37s</item>
- <item>ROI estimation of 'lpba40' atlas 13s</item>
- <item>ROI estimation of 'hammers' atlas 34s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 13s</item>
- <item>ROI estimation of 'aal3' atlas 21s</item>
- <item>ROI estimation of 'mori' atlas 33s</item>
- <item>ROI estimation of 'anatomy3' atlas 49s</item>
- <item>ROI estimation of 'julichbrain' atlas 79s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 36s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 74s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 154s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 194s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 16s</item>
- <item>Write results 17s</item>
- <item>766s</item>
- <item>Quality check: 15s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3676058/ds/DC_1/sub-0027368/ses-2/report/catreport_sub-0027368_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 56 minute(s) and 40 second(s).</item>
- <item>Image Quality Rating (IQR): 76.25% (C)</item>
- <item>GM volume (GMV): 52.20% (665.48 / 1274.97 ml)</item>
- <item>GM thickness (GMT): 2.49 0.59 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3676058/ds/DC_1/sub-0027368/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3676058/ds/DC_1/sub-0027368/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3676058/ds/DC_1/sub-0027368/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|