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- <darteltpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
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- </T1>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>/var/lib/condor/execute/dir_671787/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <td>0</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
- </tr>
- </satlas>
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- </shootingtpms>
- <templates>
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- <SurfaceDefectNumber>14.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0644566416740417</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0639134272933006</SurfacePositionRMSE>
- <res_vx_vol>[0.938000023365021 0.938000023365021 1]</res_vx_vol>
- <res_vx_voli>[0.937999963760376 0.938000023365021 1]</res_vx_voli>
- <res_RMS>0.95911210461648</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[0 9.26599979400635 51.6279983520508 100.244003295898]</tissue_mn>
- <tissue_mnr>[0 0.0924344584345818 0.515023291110992 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[0.187650681017553 10.566304095139 12.7900049385571 9.2354730240235]</tissue_std>
- <tissue_stdr>[0.00187193916644901 0.10540584474802 0.127588734030724 0.0921299308538437]</tissue_stdr>
- <contrast>33.7158660888672</contrast>
- <contrastr>0.336337983608246</contrastr>
- <res_ECR>0.334833323955536</res_ECR>
- <NCR>0.185946524143219</NCR>
- <ICR>0.325648099184036</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[1.87600004673004 1.87600004673004 2]</res_vx_vol>
- <res_RMS>1.91822420923296</res_RMS>
- <res_ECR>2.6062924861908</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[1.89584374427795 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[1.69809906300429 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>3.03826355934143</contrastr>
- <NCR>3.00038075447083</NCR>
- <ICR>1.26748037338257</ICR>
- <SurfaceEulerNumber>1.91836734693878</SurfaceEulerNumber>
- <SurfaceDefectArea>1.16043311370469</SurfaceDefectArea>
- <SurfaceDefectNumber>1.725</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.28913283348083</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.27826857566833</SurfacePositionRMSE>
- <SIQR>2.71588650956905</SIQR>
- <IQR>2.76084541237767</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-012003</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>20</SurfaceEulerNumber>
- <SurfaceDefectArea>0.641732454818747</SurfaceDefectArea>
- <SurfaceDefectNumber>14.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0644566416740417</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0639134272933006</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>20</EC_abs>
- <defect_size>0.641732454818747</defect_size>
- <vol_abs_CGW>[214.648502432191 734.805660636805 500.229457859969 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.561550936778656</vol_abs_WMH>
- <vol_rel_WMH>0.000387361027379761</vol_rel_WMH>
- <surf_TSA>1989.87408805251</surf_TSA>
- <vol_TIV>1449.68362092896</vol_TIV>
- <vol_rel_CGW>[0.148065756785362 0.506873120471581 0.345061122743057 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.56797373957984 0.612730047034447]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.56899380683899 0.746803599441806 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.99731818960171 0.246276714278703 0.309077381882749;2.6036119815957 0.174366011108247 0.419420182935597;3.24589478825262 0.26398738098837 0.271502435181654]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.913191330165814 0.366965934470483 0.582434514637905;4.17336396763026 0.359977079378536 0.417565485362096]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.05858486095834</vol_TIV>
- <vol_rel_CGW>[0.509083275599175 6.95318104295225 4.04707476190835 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03873610273798</vol_rel_WMH>
- <surf_TSA>8.62102505907485</surf_TSA>
- <SQR>5.69537992788413</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 12685.5210364575 0.468217037007372]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00127106881700456 0.00122800352983177 0.0376430116593838]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[924.386545260907 431.529400236439 271.753058184821 633.82025923318 1081.60771686054 9971.61450223472]</SPMvols0>
- <SPMvols1>[822.600106287727 407.244495090376 149.154361675592 472.3903556425 775.312059617945 10059.593508101]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[12.6326999664307 57.7686996459961 101.47679901123]</T3th>
- <Tth>
- <T3th>[-1.19494998455048 -1.1949474811554 0.217678532004356 12.6326999664307 57.7686996459961 101.47679901123 145.898849487305 230.824172973633]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0217733103781939 0.0736257210373878 0.0810713320970535 0 0]</dtc>
- <ll>[0.0805554094196272 0 0.0805554094196272 0;0.187921842320913 0.0095107466662202 0.197432588987133 2028.14770507812;0.187921842320913 0.0095107466662202 0.197432588987133 2028.14770507812]</ll>
- <rmsdtc>[0.0445705428719521 0.0968009382486343 0.106880456209183]</rmsdtc>
- <rmsgdt>[0.031347468495369 0.0432610847055912 0.0531659498810768]</rmsgdt>
- <rmsdt>0.106880456209183</rmsdt>
- <dt>0.0810713320970535</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0105682564899325 0.0380121544003487 0.052963063120842 0.0605685971677303 0.0667630434036255 0.0748992413282394]</dtc>
- <ll>[0.0837594964520318 0 0.0837594964520318 0;0.218346642246642 0.0137722985347985 0.232118940781441 7049.6953125;0.196710151074319 0.0163268147428242 0.213036965817143 11750.6044921875;0.17725728063049 0.0181297037789398 0.19538698440943 19548.751953125;0.160873441495227 0.0209048225615413 0.181778264056768 36569.9140625;0.160873441495227 0.0209048225615413 0.181778264056768 36569.9140625]</ll>
- <rmsdtc>[0.0122639369219542 0.0438402146100998 0.0642922446131706 0.0882418975234032 0.110294699668884 0.116468533873558]</rmsdtc>
- <rmsgdt>[0.00326037919148803 0.0125673748552799 0.0269293934106827 0.0468879193067551 0.0645546913146973 0.0693472251296043]</rmsgdt>
- <rmsdt>0.116468533873558</rmsdt>
- <dt>0.0748992413282394</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0027360/ses-2/sub-0027360_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 47s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 3s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 5s</item>
- <item>44s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 94s</item>
- <item>SPM preprocessing 1 (estimate 2): 79s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 20s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 50s</item>
- <item>Update probability maps 11s</item>
- <item>102s</item>
- <item>Global intensity correction: 20s</item>
- <item>SANLM denoising after intensity normalization (medium): 31s</item>
- <item>Fast Optimized Shooting registration 36s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 5s</item>
- <item>Prepare segments (LASmod = 1.13) 16s</item>
- <item>Estimate local tissue thresholds (WM) 22s</item>
- <item>Estimate local tissue thresholds (GM) 32s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 50s</item>
- <item>133s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 19s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 29s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 6s</item>
- <item>82s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 37s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>13s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0838 0.0000 0.0838 | 32.0000</item>
- <item>2 | 2.50 | 0.0811 0.0012 0.0823 | 29.4886</item>
- <item>3 | 2.50 | 0.0803 0.0018 0.0821 | 26.9772</item>
- <item>4 | 2.50 | 0.0799 0.0020 0.0820 | 24.6107</item>
- <item>5 | 2.50 | 0.0796 0.0022 0.0818 | 22.6548</item>
- <item>6 | 2.50 | 0.0794 0.0023 0.0816 | 20.6989</item>
- <item>7 | 2.50 | 0.0791 0.0024 0.0815 | 18.9688</item>
- <item>8 | 2.50 | 0.0788 0.0025 0.0813 | 17.4455</item>
- <item>9 | 2.50 | 0.0785 0.0026 0.0811 | 15.9223</item>
- <item>10 | 2.50 | 0.0782 0.0027 0.0809 | 14.6627</item>
- <item>11 | 2.50 | 0.0779 0.0028 0.0806 | 13.4764</item>
- <item>12 | 2.50 | 0.0775 0.0028 0.0804 | 12.3015</item>
- <item>13 | 2.50 | 0.0772 0.0030 0.0802 | 11.3776</item>
- <item>14 | 2.50 | 0.0769 0.0030 0.0799 | 10.4537</item>
- <item>15 | 2.25 | 0.0757 0.0031 0.0788 | 9.5920</item>
- <item>16 | 2.25 | 0.0728 0.0046 0.0774 | 8.8725</item>
- <item>29 | 2.00 | 0.0736 0.0021 0.0757 | 3.3283</item>
- <item>30 | 2.00 | 0.0676 0.0045 0.0721 | 3.1221</item>
- <item>31 | 2.00 | 0.0656 0.0054 0.0710 | 2.9160</item>
- <item>43 | 1.75 | 0.0645 0.0031 0.0676 | 1.5785</item>
- <item>44 | 1.75 | 0.0604 0.0053 0.0657 | 1.5194</item>
- <item>45 | 1.75 | 0.0591 0.0060 0.0651 | 1.4626</item>
- <item>57 | 1.50 | 0.0576 0.0044 0.0620 | 1.0900</item>
- <item>58 | 1.50 | 0.0546 0.0064 0.0610 | 1.0730</item>
- <item>59 | 1.50 | 0.0536 0.0070 0.0606 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 163s</item>
- <item>Prepare output 12s</item>
- <item>175s</item>
- <item>Jacobian determinant (RMS): 0.012 0.044 0.064 0.088 0.110 | 0.116469</item>
- <item>Template Matching: 0.084 0.218 0.197 0.177 0.161 | 0.160873</item>
- <item>Write result maps: 41s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 29s</item>
- <item>CSF distance: 16s</item>
- <item>PBT2x thickness: 47s</item>
- <item>99s</item>
- <item>Create initial surface 91s</item>
- <item>Topology correction: 94s</item>
- <item>Surface refinement: 84s</item>
- <item>Reduction of surface collisions with optimization: 70s</item>
- <item>Spherical mapping with areal smoothing 81s</item>
- <item>Spherical registration 305s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 15s</item>
- <item>PBT2x thickness: 46s</item>
- <item>94s</item>
- <item>Create initial surface 89s</item>
- <item>Topology correction: 97s</item>
- <item>Surface refinement: 74s</item>
- <item>Reduction of surface collisions with optimization: 72s</item>
- <item>Spherical mapping with areal smoothing 99s</item>
- <item>Spherical registration 330s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5679 0.6127 mm</item>
- <item>Surface intensity / position RMSE: 0.0645 / 0.0639</item>
- <item>Euler number / defect number / defect size: 20.0 / 14.5 / 0.64%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_671787/ds/DC_1/sub-0027360/ses-2/surf/lh.thickness.sub-0027360_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_671787/ds/DC_1/sub-0027360/ses-2/surf/rh.thickness.sub-0027360_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_671787/ds/DC_1/sub-0027360/ses-2/sub-0027360_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1787s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 11s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 40s</item>
- <item>ROI estimation of 'lpba40' atlas 12s</item>
- <item>ROI estimation of 'hammers' atlas 28s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 10s</item>
- <item>ROI estimation of 'aal3' atlas 17s</item>
- <item>ROI estimation of 'mori' atlas 25s</item>
- <item>ROI estimation of 'anatomy3' atlas 42s</item>
- <item>ROI estimation of 'julichbrain' atlas 54s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 21s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 40s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 86s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 128s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 12s</item>
- <item>Write results 13s</item>
- <item>528s</item>
- <item>Quality check: 15s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_671787/ds/DC_1/sub-0027360/ses-2/report/catreport_sub-0027360_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 56 minute(s) and 12 second(s).</item>
- <item>Image Quality Rating (IQR): 77.39% (C+)</item>
- <item>GM volume (GMV): 50.69% (734.81 / 1449.68 ml)</item>
- <item>GM thickness (GMT): 2.57 0.61 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_671787/ds/DC_1/sub-0027360/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_671787/ds/DC_1/sub-0027360/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_671787/ds/DC_1/sub-0027360/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|