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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
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- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_3468518/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>20</SurfaceEulerNumber>
- <SurfaceDefectArea>0.780217459389509</SurfaceDefectArea>
- <SurfaceDefectNumber>17</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0710020065307617</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0748020932078362</SurfacePositionRMSE>
- <res_vx_vol>[1 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1</res_RMS>
- <res_BB>180.445938110352</res_BB>
- <tissue_mn>[8.68000030517578 60.976001739502 222.076995849609 370.736999511719]</tissue_mn>
- <tissue_mnr>[0.023412823677063 0.164472386240959 0.599014937877655 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[5.11938885221963 36.7564343912601 42.6253246462805 26.9683636301682]</tissue_std>
- <tissue_stdr>[0.0141397314146161 0.101521126925945 0.117730975151062 0.0744865089654922]</tissue_stdr>
- <contrast>130.207901000977</contrast>
- <contrastr>0.351213663816452</contrastr>
- <res_ECR>0.364271640777588</res_ECR>
- <NCR>0.131119936704636</NCR>
- <ICR>0.320034950971603</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_ECR>2.75648784637451</res_ECR>
- <res_BB>10.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.81512832641602</contrastr>
- <NCR>2.21332097053528</NCR>
- <ICR>1.25355887413025</ICR>
- <SurfaceEulerNumber>1.91836734693878</SurfaceEulerNumber>
- <SurfaceDefectArea>1.19505436484738</SurfaceDefectArea>
- <SurfaceDefectNumber>1.85</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.42004013061523</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.49604177474976</SurfacePositionRMSE>
- <SIQR>2.47065377783128</SIQR>
- <IQR>2.12510720171785</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-004559</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>20</SurfaceEulerNumber>
- <SurfaceDefectArea>0.780217459389509</SurfaceDefectArea>
- <SurfaceDefectNumber>17</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0710020065307617</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0748020932078362</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>20</EC_abs>
- <defect_size>0.780217459389509</defect_size>
- <vol_abs_CGW>[189.079584313725 699.63437254902 483.936364705882 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.160556862745098</vol_abs_WMH>
- <vol_rel_WMH>0.00011696850991272</vol_rel_WMH>
- <surf_TSA>1936.18369919792</surf_TSA>
- <vol_TIV>1372.65032156863</vol_TIV>
- <vol_rel_CGW>[0.137747816281171 0.509695995808675 0.352556187910154 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.58054289980508 0.636142057597146]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.58772826194763 0.746255528820471 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.94090462607574 0.247019737218897 0.287834947792175;2.59219621327379 0.183859296340822 0.40921499559693;3.24651527974647 0.265838074520181 0.302950056610894]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.899744627026389 0.329948620674269 0.54068140140913;4.17512990882803 0.354868084715563 0.45931859859087]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.01780040452344</vol_TIV>
- <vol_rel_CGW>[0.5 7.0038792350696 4.18168440930593 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.01169685099127</vol_rel_WMH>
- <surf_TSA>8.61752682930598</surf_TSA>
- <SQR>5.73901003264255</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336 0.381164718994684]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.0013941468205303 0.0012683542445302 0.0376349501311779]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[829.653447058824 421.295819607843 305.493603921569 384.60971372549 1259.89039607843 8764.6399372549]</SPMvols0>
- <SPMvols1>[744.816647058823 399.551396078431 173.286105882353 326.262996078431 970.73457254902 8919.70993333333]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[77.1734008789062 241.656600952148 369.181884765625]</T3th>
- <Tth>
- <T3th>[-4.82735013961792 -4.82735347747803 3.63807249069214 77.1734008789062 241.656600952148 369.181884765625 515.186157226562 772.108581542969]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0207543466240168 0.0715308859944344 0.0782107710838318 0 0]</dtc>
- <ll>[0.0807844377985569 0 0.0807844377985569 0;0.187191875041032 0.0096772000426147 0.196869075083647 2063.6435546875;0.187191875041032 0.0096772000426147 0.196869075083647 2063.6435546875]</ll>
- <rmsdtc>[0.0453133657574654 0.092090867459774 0.101242214441299]</rmsdtc>
- <rmsgdt>[0.0323746576905251 0.0424077324569225 0.0522916354238987]</rmsgdt>
- <rmsdt>0.101242214441299</rmsdt>
- <dt>0.0782107710838318</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00964693259447813 0.0350817404687405 0.0486621744930744 0.0564145967364311 0.0622977279126644 0.0693227201700211]</dtc>
- <ll>[0.081409826380022 0 0.081409826380022 0;0.211109218559219 0.0138041533119658 0.224913371871184 7066.0009765625;0.189740544655362 0.0163259626224622 0.206066507277824 11749.9912109375;0.170056219001328 0.0181706710192326 0.188226890020561 19592.92578125;0.153896129740538 0.0208496369800721 0.17474576672061 36473.375;0.153896129740538 0.0208496369800721 0.17474576672061 36473.375]</ll>
- <rmsdtc>[0.0112997889518738 0.0403030104935169 0.058964267373085 0.0811393484473228 0.102851904928684 0.109846785664558]</rmsdtc>
- <rmsgdt>[0.00331313791684806 0.0126400785520673 0.0271649025380611 0.0463939346373081 0.0645681098103523 0.0703689754009247]</rmsgdt>
- <rmsdt>0.109846785664558</rmsdt>
- <dt>0.0693227201700211</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025977/ses-2/sub-0025977_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 55s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 7s</item>
- <item>Refine background 3s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 5s</item>
- <item>42s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 92s</item>
- <item>SPM preprocessing 1 (estimate 2): 110s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 21s</item>
- <item>Update Segmentation 22s</item>
- <item>Update Skull-Stripping 49s</item>
- <item>Update probability maps 10s</item>
- <item>103s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 30s</item>
- <item>Fast Optimized Shooting registration 43s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.00) 16s</item>
- <item>Estimate local tissue thresholds (WM) 24s</item>
- <item>Estimate local tissue thresholds (GM) 36s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 52s</item>
- <item>138s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 15s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 27s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 5s</item>
- <item>77s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 36s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>13s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0814 0.0000 0.0814 | 32.0000</item>
- <item>2 | 2.50 | 0.0787 0.0012 0.0799 | 29.4886</item>
- <item>3 | 2.50 | 0.0779 0.0018 0.0797 | 26.9772</item>
- <item>4 | 2.50 | 0.0775 0.0021 0.0796 | 24.6107</item>
- <item>5 | 2.50 | 0.0772 0.0022 0.0794 | 22.6548</item>
- <item>6 | 2.50 | 0.0769 0.0023 0.0792 | 20.6989</item>
- <item>7 | 2.50 | 0.0766 0.0024 0.0790 | 18.9688</item>
- <item>8 | 2.50 | 0.0762 0.0026 0.0788 | 17.4455</item>
- <item>9 | 2.50 | 0.0759 0.0026 0.0786 | 15.9223</item>
- <item>10 | 2.50 | 0.0756 0.0028 0.0784 | 14.6627</item>
- <item>11 | 2.50 | 0.0753 0.0028 0.0781 | 13.4764</item>
- <item>12 | 2.50 | 0.0750 0.0029 0.0779 | 12.3015</item>
- <item>13 | 2.50 | 0.0746 0.0030 0.0776 | 11.3776</item>
- <item>14 | 2.50 | 0.0743 0.0031 0.0774 | 10.4537</item>
- <item>15 | 2.25 | 0.0733 0.0032 0.0765 | 9.5920</item>
- <item>16 | 2.25 | 0.0704 0.0046 0.0750 | 8.8725</item>
- <item>29 | 2.00 | 0.0715 0.0021 0.0736 | 3.3283</item>
- <item>30 | 2.00 | 0.0654 0.0045 0.0698 | 3.1221</item>
- <item>31 | 2.00 | 0.0632 0.0054 0.0687 | 2.9160</item>
- <item>43 | 1.75 | 0.0622 0.0032 0.0654 | 1.5785</item>
- <item>44 | 1.75 | 0.0581 0.0053 0.0634 | 1.5194</item>
- <item>45 | 1.75 | 0.0567 0.0061 0.0627 | 1.4626</item>
- <item>57 | 1.50 | 0.0552 0.0044 0.0596 | 1.0900</item>
- <item>58 | 1.50 | 0.0523 0.0063 0.0586 | 1.0730</item>
- <item>59 | 1.50 | 0.0513 0.0069 0.0582 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 206s</item>
- <item>Prepare output 14s</item>
- <item>220s</item>
- <item>Jacobian determinant (RMS): 0.011 0.040 0.059 0.081 0.103 | 0.109847</item>
- <item>Template Matching: 0.081 0.211 0.190 0.170 0.154 | 0.153896</item>
- <item>Write result maps: 47s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 39s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 58s</item>
- <item>125s</item>
- <item>Create initial surface 102s</item>
- <item>Topology correction: 114s</item>
- <item>Surface refinement: 119s</item>
- <item>Reduction of surface collisions with optimization: 85s</item>
- <item>Spherical mapping with areal smoothing 107s</item>
- <item>Spherical registration 363s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 33s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 56s</item>
- <item>115s</item>
- <item>Create initial surface 101s</item>
- <item>Topology correction: 112s</item>
- <item>Surface refinement: 91s</item>
- <item>Reduction of surface collisions with optimization: 79s</item>
- <item>Spherical mapping with areal smoothing 105s</item>
- <item>Spherical registration 336s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5806 0.6359 mm</item>
- <item>Surface intensity / position RMSE: 0.0710 / 0.0748</item>
- <item>Euler number / defect number / defect size: 20.0 / 17.0 / 0.78%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3468518/ds/BNU_2/sub-0025977/ses-2/surf/lh.thickness.sub-0025977_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3468518/ds/BNU_2/sub-0025977/ses-2/surf/rh.thickness.sub-0025977_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3468518/ds/BNU_2/sub-0025977/ses-2/sub-0025977_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 2075s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 14s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 52s</item>
- <item>ROI estimation of 'lpba40' atlas 15s</item>
- <item>ROI estimation of 'hammers' atlas 35s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 13s</item>
- <item>ROI estimation of 'aal3' atlas 20s</item>
- <item>ROI estimation of 'mori' atlas 33s</item>
- <item>ROI estimation of 'anatomy3' atlas 46s</item>
- <item>ROI estimation of 'julichbrain' atlas 60s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 26s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 54s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 109s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 150s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 14s</item>
- <item>Write results 16s</item>
- <item>646s</item>
- <item>Quality check: 16s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3468518/ds/BNU_2/sub-0025977/ses-2/report/catreport_sub-0025977_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 64 minute(s) and 55 second(s).</item>
- <item>Image Quality Rating (IQR): 83.75% (B)</item>
- <item>GM volume (GMV): 50.97% (699.63 / 1372.65 ml)</item>
- <item>GM thickness (GMT): 2.58 0.64 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3468518/ds/BNU_2/sub-0025977/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3468518/ds/BNU_2/sub-0025977/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3468518/ds/BNU_2/sub-0025977/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|