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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <pbtres>0.5</pbtres>
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- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_2997796/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
- <LAB>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>26</SurfaceEulerNumber>
- <SurfaceDefectArea>1.5316432246875</SurfaceDefectArea>
- <SurfaceDefectNumber>10.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0675853490829468</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0903841406106949</SurfacePositionRMSE>
- <res_vx_vol>[1 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1</res_RMS>
- <res_BB>198.85905456543</res_BB>
- <tissue_mn>[8.7810001373291 47.3400001525879 202.912002563477 336.026000976562]</tissue_mn>
- <tissue_mnr>[0.0261319074779749 0.140881955623627 0.603858053684235 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[5.76049408197602 34.7600791006268 39.2503932209936 23.3436069379867]</tissue_std>
- <tissue_stdr>[0.017603000625968 0.106220357120037 0.119941920042038 0.0713337361812592]</tissue_stdr>
- <contrast>118.27409362793</contrast>
- <contrastr>0.351978987455368</contrastr>
- <res_ECR>0.345440268516541</res_ECR>
- <NCR>0.129078581929207</NCR>
- <ICR>0.352170348167419</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_ECR>2.66040945053101</res_ECR>
- <res_BB>10.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.80364847183228</contrastr>
- <NCR>2.18401622772217</NCR>
- <ICR>1.33325982093811</ICR>
- <SurfaceEulerNumber>2.22448979591837</SurfaceEulerNumber>
- <SurfaceDefectArea>1.38291080617188</SurfaceDefectArea>
- <SurfaceDefectNumber>1.525</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.35170698165894</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.80768275260925</SurfacePositionRMSE>
- <SIQR>2.3982610639289</SIQR>
- <IQR>2.10591195062349</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-000750</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>26</SurfaceEulerNumber>
- <SurfaceDefectArea>1.5316432246875</SurfaceDefectArea>
- <SurfaceDefectNumber>10.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0675853490829468</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0903841406106949</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>26</EC_abs>
- <defect_size>1.5316432246875</defect_size>
- <vol_abs_CGW>[328.748431372549 786.513749019608 607.166752941176 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.677039215686274</vol_abs_WMH>
- <vol_rel_WMH>0.000393072365764336</vol_rel_WMH>
- <surf_TSA>2179.08337536601</surf_TSA>
- <vol_TIV>1722.42893333333</vol_TIV>
- <vol_rel_CGW>[0.190863277439458 0.456630595201107 0.352506127359435 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.52932138425317 0.660218209219504]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.54827070236206 0.829815306657632 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.86251173535773 0.290675074283939 0.275181225848306;2.54733516326535 0.189835126328286 0.427016049417539;3.23567857258854 0.291428569231503 0.297802724734155]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.758794367536771 0.281357897777787 0.618929633300297;4.21069678528566 0.342840533129934 0.381070366699703]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>3.11477002431641</vol_TIV>
- <vol_rel_CGW>[1.27771690803624 6.05083683910034 4.18078533332319 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03930723657643</vol_rel_WMH>
- <surf_TSA>8.62386091811057</surf_TSA>
- <SQR>4.97958899491856</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336 0.402837869701244]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00143649859819561 0.00126433768309653 0.0662598833441734]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[958.932043137255 535.147517647059 493.415760784314 621.064360784314 1651.61290588235 7977.7136]</SPMvols0>
- <SPMvols1>[849.637760784314 508.49957254902 288.820125490196 522.739733333333 1210.04051764706 8155.28723529412]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[61.2695999145508 220.805603027344 339.450408935547]</T3th>
- <Tth>
- <T3th>[-4.18576002120972 -4.18576097488403 3.98999190330505 61.2695999145508 220.805603027344 339.450408935547 478.540832519531 754.083862304688]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0200358498841524 0.0725991502404213 0.0802066624164581 0 0]</dtc>
- <ll>[0.0840210534897553 0 0.0840210534897553 0;0.198701728005655 0.0107221248484745 0.20942385285413 2286.4716796875;0.198701728005655 0.0107221248484745 0.20942385285413 2286.4716796875]</ll>
- <rmsdtc>[0.0433940142393112 0.0971747785806656 0.108797818422318]</rmsdtc>
- <rmsgdt>[0.0310503654181957 0.0478333197534084 0.0589900128543377]</rmsgdt>
- <rmsdt>0.108797818422318</rmsdt>
- <dt>0.0802066624164581</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00909243058413267 0.0332467220723629 0.0479532741010189 0.0566968768835068 0.0633677393198013 0.0711573362350464]</dtc>
- <ll>[0.08516160126968 0 0.08516160126968 0;0.224624435286935 0.0135266111492674 0.238151046436203 6923.93408203125;0.202403140075475 0.0171158225660056 0.21951896264148 12318.462890625;0.18094860341361 0.0195730776302269 0.200521681043837 21105.1015625;0.162923663777408 0.0225483721695964 0.185472035947004 39445.0625;0.162923663777408 0.0225483721695964 0.185472035947004 39445.0625]</ll>
- <rmsdtc>[0.0106376260519028 0.0391934402287006 0.0599321275949478 0.085800014436245 0.109854064881802 0.117238819599152]</rmsdtc>
- <rmsgdt>[0.00334110856056213 0.0132910078391433 0.0292432680726051 0.0502823367714882 0.0686877071857452 0.0742781460285187]</rmsgdt>
- <rmsdt>0.117238819599152</rmsdt>
- <dt>0.0711573362350464</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025966/ses-2/sub-0025966_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 54s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 5s</item>
- <item>38s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 95s</item>
- <item>SPM preprocessing 1 (estimate 2): 57s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 18s</item>
- <item>Update Segmentation 21s</item>
- <item>Update Skull-Stripping 44s</item>
- <item>Update probability maps 9s</item>
- <item>91s</item>
- <item>Global intensity correction: 16s</item>
- <item>SANLM denoising after intensity normalization (medium): 34s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.09) 16s</item>
- <item>Estimate local tissue thresholds (WM) 19s</item>
- <item>Estimate local tissue thresholds (GM) 27s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 42s</item>
- <item>114s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 16s</item>
- <item>Blood vessel detection 10s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.12) 27s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 4s</item>
- <item>76s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 38s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>13s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0852 0.0000 0.0852 | 32.0000</item>
- <item>2 | 2.50 | 0.0826 0.0012 0.0838 | 29.4886</item>
- <item>3 | 2.50 | 0.0819 0.0017 0.0836 | 26.9772</item>
- <item>4 | 2.50 | 0.0815 0.0020 0.0835 | 24.6107</item>
- <item>5 | 2.50 | 0.0812 0.0021 0.0833 | 22.6548</item>
- <item>6 | 2.50 | 0.0810 0.0022 0.0832 | 20.6989</item>
- <item>7 | 2.50 | 0.0807 0.0023 0.0830 | 18.9688</item>
- <item>8 | 2.50 | 0.0804 0.0024 0.0828 | 17.4455</item>
- <item>9 | 2.50 | 0.0801 0.0025 0.0826 | 15.9223</item>
- <item>10 | 2.50 | 0.0798 0.0026 0.0824 | 14.6627</item>
- <item>11 | 2.50 | 0.0795 0.0027 0.0822 | 13.4764</item>
- <item>12 | 2.50 | 0.0792 0.0028 0.0819 | 12.3015</item>
- <item>13 | 2.50 | 0.0788 0.0029 0.0817 | 11.3776</item>
- <item>14 | 2.50 | 0.0785 0.0029 0.0815 | 10.4537</item>
- <item>15 | 2.25 | 0.0779 0.0030 0.0809 | 9.5920</item>
- <item>16 | 2.25 | 0.0749 0.0045 0.0794 | 8.8725</item>
- <item>29 | 2.00 | 0.0762 0.0020 0.0782 | 3.3283</item>
- <item>30 | 2.00 | 0.0697 0.0046 0.0743 | 3.1221</item>
- <item>31 | 2.00 | 0.0675 0.0057 0.0732 | 2.9160</item>
- <item>43 | 1.75 | 0.0664 0.0033 0.0697 | 1.5785</item>
- <item>44 | 1.75 | 0.0618 0.0057 0.0675 | 1.5194</item>
- <item>45 | 1.75 | 0.0603 0.0065 0.0668 | 1.4626</item>
- <item>57 | 1.50 | 0.0587 0.0047 0.0634 | 1.0900</item>
- <item>58 | 1.50 | 0.0554 0.0069 0.0622 | 1.0730</item>
- <item>59 | 1.50 | 0.0543 0.0075 0.0618 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 181s</item>
- <item>Prepare output 11s</item>
- <item>192s</item>
- <item>Jacobian determinant (RMS): 0.011 0.039 0.060 0.086 0.110 | 0.117239</item>
- <item>Template Matching: 0.085 0.225 0.202 0.181 0.163 | 0.162924</item>
- <item>Write result maps: 35s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 44s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 50s</item>
- <item>118s</item>
- <item>Create initial surface 101s</item>
- <item>Topology correction: 108s</item>
- <item>Surface refinement: 119s</item>
- <item>Reduction of surface collisions with optimization: 84s</item>
- <item>Spherical mapping with areal smoothing 89s</item>
- <item>Spherical registration 320s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 32s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 49s</item>
- <item>106s</item>
- <item>Create initial surface 100s</item>
- <item>Topology correction: 107s</item>
- <item>Surface refinement: 96s</item>
- <item>Reduction of surface collisions with optimization: 86s</item>
- <item>Spherical mapping with areal smoothing 103s</item>
- <item>Spherical registration 338s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5293 0.6602 mm</item>
- <item>Surface intensity / position RMSE: 0.0676 / 0.0904</item>
- <item>Euler number / defect number / defect size: 26.0 / 10.5 / 1.53%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-2/surf/lh.thickness.sub-0025966_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-2/surf/rh.thickness.sub-0025966_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-2/sub-0025966_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 13s</item>
- <item>Surface and thickness estimation takes: 1987s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 15s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 50s</item>
- <item>ROI estimation of 'lpba40' atlas 14s</item>
- <item>ROI estimation of 'hammers' atlas 34s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 12s</item>
- <item>ROI estimation of 'aal3' atlas 21s</item>
- <item>ROI estimation of 'mori' atlas 29s</item>
- <item>ROI estimation of 'anatomy3' atlas 41s</item>
- <item>ROI estimation of 'julichbrain' atlas 48s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 19s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 35s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 67s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 90s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s</item>
- <item>Write results 9s</item>
- <item>487s</item>
- <item>Quality check: 13s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-2/report/catreport_sub-0025966_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 57 minute(s) and 48 second(s).</item>
- <item>Image Quality Rating (IQR): 83.94% (B)</item>
- <item>GM volume (GMV): 45.66% (786.51 / 1722.43 ml)</item>
- <item>GM thickness (GMT): 2.53 0.66 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|