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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
- <gcutstr>2</gcutstr>
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- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <nproc>1</nproc>
- <species>human</species>
- <APP>1070</APP>
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- <shootingsurf>Template_T1</shootingsurf>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
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- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_2997796/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>Desikan</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
- <BG>5</BG>
- <BV>7</BV>
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- <MB>13</MB>
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- <HI>23</HI>
- <PH>25</PH>
- <LE>27</LE>
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- </darteltpms>
- <shootingtpms>
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- </shootingtpms>
- <templates>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii</item>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii</item>
- </templates>
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- <qualitymeasures>
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- <SurfaceEulerNumber>32</SurfaceEulerNumber>
- <SurfaceDefectArea>1.49536023776741</SurfaceDefectArea>
- <SurfaceDefectNumber>13</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0705409497022629</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0831137672066689</SurfacePositionRMSE>
- <res_vx_vol>[1.33000004291534 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1.12084791031237</res_RMS>
- <res_BB>NaN</res_BB>
- <tissue_mn>[5.50600004196167 29.8990001678467 181.352005004883 326.22900390625]</tissue_mn>
- <tissue_mnr>[0.0168777145445347 0.0916503444314003 0.555903971195221 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.02442091625867 34.0181747254012 39.7113084212591 26.8598793164782]</tissue_std>
- <tissue_stdr>[0.0125479651615024 0.106067150831223 0.123818092048168 0.0837479084730148]</tissue_stdr>
- <contrast>111.89306640625</contrast>
- <contrastr>0.342989325523376</contrastr>
- <res_ECR>0.434044599533081</res_ECR>
- <NCR>0.150861412286758</NCR>
- <ICR>0.38014018535614</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000008583069 2 2]</res_vx_vol>
- <res_RMS>2.24169582062474</res_RMS>
- <res_ECR>3.11247229576111</res_ECR>
- <res_BB>NaN</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.93849325180054</contrastr>
- <NCR>2.49671840667725</NCR>
- <ICR>1.40262937545776</ICR>
- <SurfaceEulerNumber>2.53061224489796</SurfaceEulerNumber>
- <SurfaceDefectArea>1.37384005944185</SurfaceDefectArea>
- <SurfaceDefectNumber>1.65</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.4108190536499</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.66227531433105</SurfacePositionRMSE>
- <SIQR>2.78811789775612</SIQR>
- <IQR>2.39257767594587</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-011940</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>32</SurfaceEulerNumber>
- <SurfaceDefectArea>1.49536023776741</SurfaceDefectArea>
- <SurfaceDefectNumber>13</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0705409497022629</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0831137672066689</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>32</EC_abs>
- <defect_size>1.49536023776741</defect_size>
- <vol_abs_CGW>[299.647768627451 789.444631372549 615.243694117647 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.939423529411765</vol_abs_WMH>
- <vol_rel_WMH>0.00055119617113907</vol_rel_WMH>
- <surf_TSA>2167.26330117114</surf_TSA>
- <vol_TIV>1704.33609411765</vol_TIV>
- <vol_rel_CGW>[0.175814952028333 0.463197742568054 0.360987305403612 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.52522842629598 0.666917175656173]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.54227805137634 0.788641449753595 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.8287276566855 0.265637060977437 0.274396339477999;2.53299068633408 0.193249676348656 0.416698561040118;3.21784294761114 0.282918074076566 0.308905099481883]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.814537375123741 0.292165742174247 0.555270560979646;4.17896608698645 0.324723262524938 0.444729439020354]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>2.91603690257957</vol_TIV>
- <vol_rel_CGW>[1.00745244303759 6.16878129612167 4.33310534130051 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.05511961711391</vol_rel_WMH>
- <surf_TSA>8.62382908799358</surf_TSA>
- <SQR>5.08105307764857</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11156.849 0.420564126849188]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00171332457102835 0.00156738085206598 0.0517928078770638]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[998.121898039216 532.52931372549 452.349709803922 691.534392156863 1520.70761568627 7672.48530196078]</SPMvols0>
- <SPMvols1>[869.887674509804 500.623674509804 252.027392156863 569.371658823529 1170.88334901961 7779.66352156863]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[42.8539009094238 202.297607421875 337.641204833984]</T3th>
- <Tth>
- <T3th>[-45.4823913574219 -45.4823837280273 -1.31424140930176 42.8539009094238 202.297607421875 337.641204833984 485.034851074219 707.747680664062]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0200517456978559 0.0716355741024017 0.078993447124958 0 0]</dtc>
- <ll>[0.0826533677435818 0 0.0826533677435818 0;0.195818512952056 0.0102448114255468 0.206063324377603 2184.685546875;0.195818512952056 0.0102448114255468 0.206063324377603 2184.685546875]</ll>
- <rmsdtc>[0.043055422604084 0.0953332632780075 0.1065484136343]</rmsdtc>
- <rmsgdt>[0.0307370871305466 0.0465674661099911 0.0572884306311607]</rmsgdt>
- <rmsdt>0.1065484136343</rmsdt>
- <dt>0.078993447124958</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00887283124029636 0.0322031229734421 0.0460531115531921 0.0544818229973316 0.0608976520597935 0.0680889934301376]</dtc>
- <ll>[0.0843572977961485 0 0.0843572977961485 0;0.222812652625153 0.0129540846306471 0.2357667372558 6630.8720703125;0.201651732741708 0.0165105552312071 0.218162287972915 11882.8447265625;0.180759411818168 0.0190500819105708 0.199809493728739 20541.169921875;0.163076220179689 0.02201654384864 0.185092764028329 38514.70703125;0.163076220179689 0.02201654384864 0.185092764028329 38514.70703125]</ll>
- <rmsdtc>[0.0103711513802409 0.0378851406276226 0.0573639012873173 0.0816829055547714 0.104835830628872 0.112127862870693]</rmsdtc>
- <rmsgdt>[0.00327827874571085 0.0128876455128193 0.0281869322061539 0.0485348589718342 0.0665901303291321 0.072129026055336]</rmsgdt>
- <rmsdt>0.112127862870693</rmsdt>
- <dt>0.0680889934301376</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025966/ses-1/sub-0025966_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 36s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 5s</item>
- <item>38s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 81s</item>
- <item>SPM preprocessing 1 (estimate 2): 69s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 17s</item>
- <item>Update Segmentation 21s</item>
- <item>Update Skull-Stripping 44s</item>
- <item>Update probability maps 9s</item>
- <item>91s</item>
- <item>Global intensity correction: 17s</item>
- <item>SANLM denoising after intensity normalization (medium): 31s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.06) 16s</item>
- <item>Estimate local tissue thresholds (WM) 19s</item>
- <item>Estimate local tissue thresholds (GM) 28s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 41s</item>
- <item>114s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 17s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.08) 29s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 4s</item>
- <item>79s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 40s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0844 0.0000 0.0844 | 32.0000</item>
- <item>2 | 2.50 | 0.0820 0.0011 0.0831 | 29.4886</item>
- <item>3 | 2.50 | 0.0812 0.0017 0.0829 | 26.9772</item>
- <item>4 | 2.50 | 0.0809 0.0019 0.0828 | 24.6107</item>
- <item>5 | 2.50 | 0.0806 0.0020 0.0827 | 22.6548</item>
- <item>6 | 2.50 | 0.0804 0.0021 0.0825 | 20.6989</item>
- <item>7 | 2.50 | 0.0801 0.0022 0.0823 | 18.9688</item>
- <item>8 | 2.50 | 0.0798 0.0023 0.0821 | 17.4455</item>
- <item>9 | 2.50 | 0.0796 0.0024 0.0819 | 15.9223</item>
- <item>10 | 2.50 | 0.0793 0.0025 0.0817 | 14.6627</item>
- <item>11 | 2.50 | 0.0790 0.0026 0.0815 | 13.4764</item>
- <item>12 | 2.50 | 0.0787 0.0026 0.0813 | 12.3015</item>
- <item>13 | 2.50 | 0.0783 0.0027 0.0811 | 11.3776</item>
- <item>14 | 2.50 | 0.0780 0.0028 0.0808 | 10.4537</item>
- <item>15 | 2.25 | 0.0772 0.0029 0.0801 | 9.5920</item>
- <item>16 | 2.25 | 0.0743 0.0043 0.0786 | 8.8725</item>
- <item>29 | 2.00 | 0.0756 0.0020 0.0775 | 3.3283</item>
- <item>30 | 2.00 | 0.0693 0.0045 0.0738 | 3.1221</item>
- <item>31 | 2.00 | 0.0672 0.0055 0.0727 | 2.9160</item>
- <item>43 | 1.75 | 0.0662 0.0031 0.0694 | 1.5785</item>
- <item>44 | 1.75 | 0.0617 0.0055 0.0673 | 1.5194</item>
- <item>45 | 1.75 | 0.0603 0.0064 0.0666 | 1.4626</item>
- <item>57 | 1.50 | 0.0586 0.0046 0.0632 | 1.0900</item>
- <item>58 | 1.50 | 0.0554 0.0067 0.0621 | 1.0730</item>
- <item>59 | 1.50 | 0.0544 0.0073 0.0617 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 169s</item>
- <item>Prepare output 11s</item>
- <item>180s</item>
- <item>Jacobian determinant (RMS): 0.010 0.038 0.057 0.082 0.105 | 0.112128</item>
- <item>Template Matching: 0.084 0.223 0.202 0.181 0.163 | 0.163076</item>
- <item>Write result maps: 55s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 46s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 50s</item>
- <item>121s</item>
- <item>Create initial surface 101s</item>
- <item>Topology correction: 107s</item>
- <item>Surface refinement: 77s</item>
- <item>Reduction of surface collisions with optimization: 80s</item>
- <item>Spherical mapping with areal smoothing 90s</item>
- <item>Spherical registration 324s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 33s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 51s</item>
- <item>109s</item>
- <item>Create initial surface 103s</item>
- <item>Topology correction: 111s</item>
- <item>Surface refinement: 115s</item>
- <item>Reduction of surface collisions with optimization: 89s</item>
- <item>Spherical mapping with areal smoothing 121s</item>
- <item>Spherical registration 330s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5256 0.6665 mm</item>
- <item>Surface intensity / position RMSE: 0.0705 / 0.0831</item>
- <item>Euler number / defect number / defect size: 32.0 / 13.0 / 1.50%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-1/surf/lh.thickness.sub-0025966_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-1/surf/rh.thickness.sub-0025966_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-1/sub-0025966_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 10s</item>
- <item>Surface and thickness estimation takes: 1987s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 9s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 32s</item>
- <item>ROI estimation of 'lpba40' atlas 9s</item>
- <item>ROI estimation of 'hammers' atlas 22s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 20s</item>
- <item>ROI estimation of 'anatomy3' atlas 28s</item>
- <item>ROI estimation of 'julichbrain' atlas 37s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 15s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 58s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 82s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s</item>
- <item>Write results 8s</item>
- <item>369s</item>
- <item>Quality check: 11s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-1/report/catreport_sub-0025966_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 55 minute(s) and 38 second(s).</item>
- <item>Image Quality Rating (IQR): 81.07% (B-)</item>
- <item>GM volume (GMV): 46.32% (789.44 / 1704.34 ml)</item>
- <item>GM thickness (GMT): 2.53 0.67 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2997796/ds/BNU_2/sub-0025966/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|