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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
- <gcutstr>2</gcutstr>
- <cleanupstr>0.5</cleanupstr>
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- <NCstr>-Inf</NCstr>
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- <SLC>0</SLC>
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- <restype>optimal</restype>
- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
- <bids_yes>0</bids_yes>
- <nproc>1</nproc>
- <species>human</species>
- <APP>1070</APP>
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- <vox>1.5</vox>
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- <shootingsurf>Template_T1</shootingsurf>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii</item>
- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <reduce_mesh>1</reduce_mesh>
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- <scale_cortex>0.7</scale_cortex>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_1954942/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot</td>
- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
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- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
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- <ON>11</ON>
- <MB>13</MB>
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- <VT>15</VT>
- <NV>17</NV>
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- <HI>23</HI>
- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <qualitymeasures>
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- <SurfaceEulerNumber>14</SurfaceEulerNumber>
- <SurfaceDefectArea>0.188386485107762</SurfaceDefectArea>
- <SurfaceDefectNumber>14</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0657704398036003</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0629375949501991</SurfacePositionRMSE>
- <res_vx_vol>[1.33000004291534 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1.12084791031237</res_RMS>
- <res_BB>NaN</res_BB>
- <tissue_mn>[5.46400022506714 29.4979991912842 176.970993041992 322.075988769531]</tissue_mn>
- <tissue_mnr>[0.016964940354228 0.0915870815515518 0.549469709396362 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[2.39976843587835 30.280284316816 39.1756017263324 26.4696428679226]</tissue_std>
- <tissue_stdr>[0.00757952453568578 0.0956384614109993 0.123733788728714 0.0836027786135674]</tissue_stdr>
- <contrast>110.044425964355</contrast>
- <contrastr>0.341672241687775</contrastr>
- <res_ECR>0.408377647399902</res_ECR>
- <NCR>0.139661714434624</NCR>
- <ICR>0.352238923311234</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000008583069 2 2]</res_vx_vol>
- <res_RMS>2.24169582062474</res_RMS>
- <res_ECR>2.98151850700378</res_ECR>
- <res_BB>NaN</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.95824956893921</contrastr>
- <NCR>2.335942029953</NCR>
- <ICR>1.33342981338501</ICR>
- <SurfaceEulerNumber>1.61224489795918</SurfaceEulerNumber>
- <SurfaceDefectArea>1.04709662127694</SurfaceDefectArea>
- <SurfaceDefectNumber>1.7</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.31540870666504</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.25875186920166</SurfacePositionRMSE>
- <SIQR>2.67087677418965</SIQR>
- <IQR>2.29220064642158</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-003023</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>14</SurfaceEulerNumber>
- <SurfaceDefectArea>0.188386485107762</SurfaceDefectArea>
- <SurfaceDefectNumber>14</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0657704398036003</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0629375949501991</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>14</EC_abs>
- <defect_size>0.188386485107762</defect_size>
- <vol_abs_CGW>[227.115254901961 742.155309803922 568.262156862745 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.263337254901961</vol_abs_WMH>
- <vol_rel_WMH>0.000171272618272018</vol_rel_WMH>
- <surf_TSA>2144.7150539913</surf_TSA>
- <vol_TIV>1537.53272156863</vol_TIV>
- <vol_rel_CGW>[0.147714095261825 0.482692367708934 0.369593537029242 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.49922273163989 0.627155545015847]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.493971824646 0.736313178702084 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.88378566954875 0.233538424758559 0.302586186937093;2.51182769037307 0.177797067423689 0.414125628024357;3.15527291459657 0.261120130354412 0.28328818503855]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.898559654826703 0.311564119726073 0.486093499027813;4.13163075923214 0.363489474087346 0.513906500972187]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.43759525176385</vol_TIV>
- <vol_rel_CGW>[0.502767515478173 6.51890028212884 4.48767128285276 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.0171272618272</vol_rel_WMH>
- <surf_TSA>8.62374814983307</surf_TSA>
- <SQR>5.36382357752767</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11156.849 0.414321625169245]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00182430120185018 0.00168853369541466 0.0280620586127043]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[930.447631372549 479.909262745098 363.889443137255 710.897207843137 1025.23322745098 8168.86507058824]</SPMvols0>
- <SPMvols1>[830.111917647059 454.435701960784 198.069305882353 519.004090196078 858.195156862745 8281.38045882353]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[44.7154006958008 200.380004882812 333.841186523438]</T3th>
- <Tth>
- <T3th>[-45.4867210388184 -45.4867210388184 -0.385660171508789 44.7154006958008 200.380004882812 333.841186523438 478.404083251953 647.060607910156]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0203472431749105 0.070835679769516 0.0776549354195595 0 0]</dtc>
- <ll>[0.080905812031844 0 0.080905812031844 0;0.189980258460806 0.0097875057005224 0.199767764161329 2087.166015625;0.189980258460806 0.0097875057005224 0.199767764161329 2087.166015625]</ll>
- <rmsdtc>[0.0455191880464554 0.0917853266000748 0.102254264056683]</rmsdtc>
- <rmsgdt>[0.0330405794084072 0.0434371829032898 0.0534836016595364]</rmsgdt>
- <rmsdt>0.102254264056683</rmsdt>
- <dt>0.0776549354195595</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00904499273747206 0.0333894826471806 0.0478949025273323 0.0565720833837986 0.0626550316810608 0.0698800608515739]</dtc>
- <ll>[0.0823813181204462 0 0.0823813181204462 0;0.215433241758242 0.0131215029761905 0.228554744734432 6716.5693359375;0.194430528287704 0.0162628202322596 0.210693348519964 11704.546875;0.174674879112135 0.0183187595233392 0.192993638635474 19752.60546875;0.158119423295355 0.0211810943460239 0.179300517641379 37053.2109375;0.158119423295355 0.0211810943460239 0.179300517641379 37053.2109375]</ll>
- <rmsdtc>[0.0104242544621229 0.0381586439907551 0.0578624606132507 0.0823411494493484 0.105037301778793 0.111279487609863]</rmsdtc>
- <rmsgdt>[0.0032680097501725 0.0127498554065824 0.0275237523019314 0.046450637280941 0.0646297261118889 0.0686672180891037]</rmsgdt>
- <rmsdt>0.111279487609863</rmsdt>
- <dt>0.0698800608515739</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025953/ses-1/sub-0025953_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 24s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 4s</item>
- <item>Estimate background 4s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 3s</item>
- <item>23s</item>
- <item>Correct center-of-mass 2s</item>
- <item>Affine registration 6s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 51s</item>
- <item>SPM preprocessing 1 (estimate 2): 49s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 12s</item>
- <item>Update Segmentation 13s</item>
- <item>Update Skull-Stripping 27s</item>
- <item>Update probability maps 6s</item>
- <item>58s</item>
- <item>Global intensity correction: 10s</item>
- <item>SANLM denoising after intensity normalization (medium): 20s</item>
- <item>Fast Optimized Shooting registration 22s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 2s</item>
- <item>Prepare partitions 1s</item>
- <item>Prepare segments (LASmod = 1.08) 10s</item>
- <item>Estimate local tissue thresholds (WM) 12s</item>
- <item>Estimate local tissue thresholds (GM) 18s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 27s</item>
- <item>72s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 8s</item>
- <item>Blood vessel detection 6s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 14s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>42s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 23s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.37 0.05,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>7s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0824 0.0000 0.0824 | 32.0000</item>
- <item>2 | 2.50 | 0.0797 0.0012 0.0809 | 29.4886</item>
- <item>3 | 2.50 | 0.0790 0.0018 0.0808 | 26.9772</item>
- <item>4 | 2.50 | 0.0786 0.0020 0.0806 | 24.6107</item>
- <item>5 | 2.50 | 0.0783 0.0022 0.0805 | 22.6548</item>
- <item>6 | 2.50 | 0.0781 0.0022 0.0803 | 20.6989</item>
- <item>7 | 2.50 | 0.0778 0.0023 0.0801 | 18.9688</item>
- <item>8 | 2.50 | 0.0775 0.0024 0.0799 | 17.4455</item>
- <item>9 | 2.50 | 0.0772 0.0025 0.0797 | 15.9223</item>
- <item>10 | 2.50 | 0.0769 0.0026 0.0795 | 14.6627</item>
- <item>11 | 2.50 | 0.0766 0.0027 0.0793 | 13.4764</item>
- <item>12 | 2.50 | 0.0763 0.0027 0.0790 | 12.3015</item>
- <item>13 | 2.50 | 0.0760 0.0028 0.0788 | 11.3776</item>
- <item>14 | 2.50 | 0.0757 0.0029 0.0786 | 10.4537</item>
- <item>15 | 2.25 | 0.0748 0.0029 0.0777 | 9.5920</item>
- <item>16 | 2.25 | 0.0718 0.0044 0.0762 | 8.8725</item>
- <item>29 | 2.00 | 0.0729 0.0020 0.0749 | 3.3283</item>
- <item>30 | 2.00 | 0.0668 0.0044 0.0713 | 3.1221</item>
- <item>31 | 2.00 | 0.0648 0.0054 0.0702 | 2.9160</item>
- <item>43 | 1.75 | 0.0638 0.0031 0.0669 | 1.5785</item>
- <item>44 | 1.75 | 0.0596 0.0053 0.0649 | 1.5194</item>
- <item>45 | 1.75 | 0.0582 0.0061 0.0643 | 1.4626</item>
- <item>57 | 1.50 | 0.0567 0.0044 0.0612 | 1.0900</item>
- <item>58 | 1.50 | 0.0537 0.0064 0.0601 | 1.0730</item>
- <item>59 | 1.50 | 0.0527 0.0071 0.0598 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 110s</item>
- <item>Prepare output 7s</item>
- <item>117s</item>
- <item>Jacobian determinant (RMS): 0.010 0.038 0.058 0.082 0.105 | 0.111279</item>
- <item>Template Matching: 0.082 0.215 0.194 0.175 0.158 | 0.158119</item>
- <item>Write result maps: 37s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 20s</item>
- <item>CSF distance: 10s</item>
- <item>PBT2x thickness: 31s</item>
- <item>66s</item>
- <item>Create initial surface 60s</item>
- <item>Topology correction: 70s</item>
- <item>Surface refinement: 62s</item>
- <item>Reduction of surface collisions with optimization: 51s</item>
- <item>Spherical mapping with areal smoothing 60s</item>
- <item>Spherical registration 182s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 18s</item>
- <item>CSF distance: 10s</item>
- <item>PBT2x thickness: 31s</item>
- <item>65s</item>
- <item>Create initial surface 60s</item>
- <item>Topology correction: 72s</item>
- <item>Surface refinement: 55s</item>
- <item>Reduction of surface collisions with optimization: 52s</item>
- <item>Spherical mapping with areal smoothing 63s</item>
- <item>Spherical registration 197s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4992 0.6272 mm</item>
- <item>Surface intensity / position RMSE: 0.0658 / 0.0629</item>
- <item>Euler number / defect number / defect size: 14.0 / 14.0 / 0.19%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1954942/ds/BNU_2/sub-0025953/ses-1/surf/lh.thickness.sub-0025953_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_1954942/ds/BNU_2/sub-0025953/ses-1/surf/rh.thickness.sub-0025953_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_1954942/ds/BNU_2/sub-0025953/ses-1/sub-0025953_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1187s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 6s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 22s</item>
- <item>ROI estimation of 'lpba40' atlas 6s</item>
- <item>ROI estimation of 'hammers' atlas 16s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 9s</item>
- <item>ROI estimation of 'mori' atlas 13s</item>
- <item>ROI estimation of 'anatomy3' atlas 19s</item>
- <item>ROI estimation of 'julichbrain' atlas 24s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 18s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 40s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 58s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 5s</item>
- <item>Write results 6s</item>
- <item>254s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_1954942/ds/BNU_2/sub-0025953/ses-1/report/catreport_sub-0025953_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 34 minute(s) and 28 second(s).</item>
- <item>Image Quality Rating (IQR): 82.08% (B-)</item>
- <item>GM volume (GMV): 48.27% (742.16 / 1537.53 ml)</item>
- <item>GM thickness (GMT): 2.50 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_1954942/ds/BNU_2/sub-0025953/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_1954942/ds/BNU_2/sub-0025953/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_1954942/ds/BNU_2/sub-0025953/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|