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- <uhrlim>1.4</uhrlim>
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- <resval>[1 0.3]</resval>
- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_2677822/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
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- <MB>13</MB>
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- <NV>17</NV>
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- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>1.38653640554109</SurfaceDefectArea>
- <SurfaceDefectNumber>15</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0716176331043243</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0818679481744766</SurfacePositionRMSE>
- <res_vx_vol>[1.00000002207198 0.999999983241509 1.00000002613706]</res_vx_vol>
- <res_vx_voli>[1.00000008657571 0.999999984151408 1.00000002614341]</res_vx_voli>
- <res_RMS>1.00000001048352</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[7.28000020980835 57.6040000915527 191.276000976562 318.184997558594]</tissue_mn>
- <tissue_mnr>[0.0228797718882561 0.181039333343506 0.60114711523056 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.47795312523472 32.1286099491473 36.2741318385849 23.7183070379581]</tissue_std>
- <tissue_stdr>[0.0144029632210732 0.103338994085789 0.116672717034817 0.0762879550457001]</tissue_stdr>
- <contrast>111.904037475586</contrast>
- <contrastr>0.351694881916046</contrastr>
- <res_ECR>0.38714599609375</res_ECR>
- <NCR>0.144374012947083</NCR>
- <ICR>0.315486878156662</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.00000004414397 1.99999996648302 2.00000005227413]</res_vx_vol>
- <res_RMS>2.00000002096704</res_RMS>
- <res_ECR>2.87319374084473</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.80790996551514</contrastr>
- <NCR>2.40358924865723</NCR>
- <ICR>1.24227893352509</ICR>
- <SurfaceEulerNumber>2.3265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.34663410138527</SurfaceDefectArea>
- <SurfaceDefectNumber>1.75</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.43235266208649</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.63735890388489</SurfacePositionRMSE>
- <SIQR>2.58676997912609</SIQR>
- <IQR>2.26183541693343</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-002557</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>28</SurfaceEulerNumber>
- <SurfaceDefectArea>1.38653640554109</SurfaceDefectArea>
- <SurfaceDefectNumber>15</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0716176331043243</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0818679481744766</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>28</EC_abs>
- <defect_size>1.38653640554109</defect_size>
- <vol_abs_CGW>[233.990508941291 661.913962159163 503.532448777448 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.154662760080301</vol_abs_WMH>
- <vol_rel_WMH>0.000110517850346405</vol_rel_WMH>
- <surf_TSA>1927.05044431381</surf_TSA>
- <vol_TIV>1399.4369198779</vol_TIV>
- <vol_rel_CGW>[0.167203327007913 0.472985922235719 0.359810750756369 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.43736499334583 0.620708269006338]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.44702863693237 0.745810209314892 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.82704311000177 0.256509008743418 0.288455705800581;2.46998425149347 0.178404997009055 0.447643118918236;3.1236502834721 0.272576236258952 0.263901175281183]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.813876612894774 0.287760676465364 0.571848585079015;4.07499395849367 0.358861392108119 0.428151414920985]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00000755393227</vol_TIV>
- <vol_rel_CGW>[0.852789637354756 6.34457475279667 4.31197469030835 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.01105178503464</vol_rel_WMH>
- <surf_TSA>8.61664130935275</surf_TSA>
- <SQR>5.21732327682061</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.3363627613 0.385828503927081]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00130026321858168 0.00117915449663997 0.0537880919873714]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[823.750679797153 432.214398731577 412.307894842439 385.535809896072 1403.74204970671 8608.00435543045]</SPMvols0>
- <SPMvols1>[721.722909129357 407.087337473976 223.607429504104 359.773654459303 994.570633599472 8827.6108198411]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[70.377799987793 208.823196411133 318.082794189453]</T3th>
- <Tth>
- <T3th>[-4.31377983093262 -4.31378221511841 3.01312780380249 70.377799987793 208.823196411133 318.082794189453 441.935302734375 672.493103027344]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0209572575986385 0.0740683227777481 0.081525519490242 0 0]</dtc>
- <ll>[0.0818480590478379 0 0.0818480590478379 0;0.190036933963038 0.00971327480577192 0.19975020876881 2071.33642578125;0.190036933963038 0.00971327480577192 0.19975020876881 2071.33642578125]</ll>
- <rmsdtc>[0.0452759191393852 0.0972998663783073 0.107086032629013]</rmsdtc>
- <rmsgdt>[0.0322879776358604 0.0429085567593575 0.0528320595622063]</rmsgdt>
- <rmsdt>0.107086032629013</rmsdt>
- <dt>0.081525519490242</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00989258848130703 0.0359374694526196 0.0496948026120663 0.0570390298962593 0.0626334846019745 0.0698818042874336]</dtc>
- <ll>[0.0830556672407891 0 0.0830556672407891 0;0.215170497557998 0.013829987026862 0.22900048458486 7079.224609375;0.193609627010526 0.0159955556658427 0.209605182676369 11512.193359375;0.173854498215664 0.0177748336864446 0.191629331902108 19166.10546875;0.157720865228459 0.0203887478327702 0.178109613061229 35667.1171875;0.157720865228459 0.0203887478327702 0.178109613061229 35667.1171875]</ll>
- <rmsdtc>[0.011675070039928 0.0416797511279583 0.0606521219015121 0.0828324928879738 0.104379735887051 0.110202431678772]</rmsdtc>
- <rmsgdt>[0.00334315584041178 0.0125081045553088 0.0267420280724764 0.0450457260012627 0.0633154213428497 0.0667124763131142]</rmsgdt>
- <rmsdt>0.110202431678772</rmsdt>
- <dt>0.0698818042874336</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025948/ses-2/sub-0025948_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 31s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 4s</item>
- <item>Estimate background 3s</item>
- <item>Initial correction 4s</item>
- <item>Refine background 2s</item>
- <item>Final correction 3s</item>
- <item>Final scaling 3s</item>
- <item>23s</item>
- <item>Correct center-of-mass 2s</item>
- <item>Affine registration 6s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 51s</item>
- <item>SPM preprocessing 1 (estimate 2): 42s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 12s</item>
- <item>Update Segmentation 13s</item>
- <item>Update Skull-Stripping 28s</item>
- <item>Update probability maps 6s</item>
- <item>58s</item>
- <item>Global intensity correction: 10s</item>
- <item>SANLM denoising after intensity normalization (medium): 17s</item>
- <item>Fast Optimized Shooting registration 22s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 2s</item>
- <item>Prepare partitions 1s</item>
- <item>Prepare segments (LASmod = 1.00) 9s</item>
- <item>Estimate local tissue thresholds (WM) 12s</item>
- <item>Estimate local tissue thresholds (GM) 17s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 27s</item>
- <item>71s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 5s</item>
- <item>Major structures 2s</item>
- <item>Ventricle detection 7s</item>
- <item>Blood vessel detection 6s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 12s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 2s</item>
- <item>Final corrections 3s</item>
- <item>38s</item>
- <item>Blood vessel correction (BVCstr=0.50): 1s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 22s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.98 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 3s</item>
- <item>Level 1 cleanup (brain masking) 2s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 2s</item>
- <item>7s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0831 0.0000 0.0831 | 32.0000</item>
- <item>2 | 2.50 | 0.0803 0.0012 0.0815 | 29.4886</item>
- <item>3 | 2.50 | 0.0795 0.0019 0.0814 | 26.9772</item>
- <item>4 | 2.50 | 0.0791 0.0021 0.0812 | 24.6107</item>
- <item>5 | 2.50 | 0.0788 0.0023 0.0810 | 22.6548</item>
- <item>6 | 2.50 | 0.0785 0.0024 0.0809 | 20.6989</item>
- <item>7 | 2.50 | 0.0782 0.0025 0.0807 | 18.9688</item>
- <item>8 | 2.50 | 0.0779 0.0026 0.0805 | 17.4455</item>
- <item>9 | 2.50 | 0.0776 0.0026 0.0802 | 15.9223</item>
- <item>10 | 2.50 | 0.0773 0.0028 0.0800 | 14.6627</item>
- <item>11 | 2.50 | 0.0770 0.0028 0.0798 | 13.4764</item>
- <item>12 | 2.50 | 0.0766 0.0029 0.0795 | 12.3015</item>
- <item>13 | 2.50 | 0.0763 0.0030 0.0793 | 11.3776</item>
- <item>14 | 2.50 | 0.0760 0.0031 0.0791 | 10.4537</item>
- <item>15 | 2.25 | 0.0747 0.0031 0.0778 | 9.5920</item>
- <item>16 | 2.25 | 0.0717 0.0046 0.0763 | 8.8725</item>
- <item>29 | 2.00 | 0.0725 0.0021 0.0746 | 3.3283</item>
- <item>30 | 2.00 | 0.0665 0.0044 0.0709 | 3.1221</item>
- <item>31 | 2.00 | 0.0645 0.0053 0.0699 | 2.9160</item>
- <item>43 | 1.75 | 0.0633 0.0031 0.0664 | 1.5785</item>
- <item>44 | 1.75 | 0.0593 0.0052 0.0645 | 1.5194</item>
- <item>45 | 1.75 | 0.0580 0.0059 0.0639 | 1.4626</item>
- <item>57 | 1.50 | 0.0564 0.0043 0.0608 | 1.0900</item>
- <item>58 | 1.50 | 0.0535 0.0062 0.0598 | 1.0730</item>
- <item>59 | 1.50 | 0.0526 0.0068 0.0594 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 109s</item>
- <item>Prepare output 7s</item>
- <item>116s</item>
- <item>Jacobian determinant (RMS): 0.012 0.042 0.061 0.083 0.104 | 0.110202</item>
- <item>Template Matching: 0.083 0.215 0.194 0.174 0.158 | 0.157721</item>
- <item>Write result maps: 23s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 19s</item>
- <item>CSF distance: 9s</item>
- <item>PBT2x thickness: 27s</item>
- <item>59s</item>
- <item>Create initial surface 52s</item>
- <item>Topology correction: 65s</item>
- <item>Surface refinement: 68s</item>
- <item>Reduction of surface collisions with optimization: 45s</item>
- <item>Spherical mapping with areal smoothing 56s</item>
- <item>Spherical registration 188s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 17s</item>
- <item>CSF distance: 9s</item>
- <item>PBT2x thickness: 27s</item>
- <item>57s</item>
- <item>Create initial surface 48s</item>
- <item>Topology correction: 63s</item>
- <item>Surface refinement: 43s</item>
- <item>Reduction of surface collisions with optimization: 44s</item>
- <item>Spherical mapping with areal smoothing 54s</item>
- <item>Spherical registration 191s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.4376 0.6194 mm</item>
- <item>Surface intensity / position RMSE: 0.0716 / 0.0819</item>
- <item>Euler number / defect number / defect size: 28.0 / 15.0 / 1.39%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2677822/ds/BNU_2/sub-0025948/ses-2/surf/lh.thickness.sub-0025948_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2677822/ds/BNU_2/sub-0025948/ses-2/surf/rh.thickness.sub-0025948_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2677822/ds/BNU_2/sub-0025948/ses-2/sub-0025948_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 7s</item>
- <item>Surface and thickness estimation takes: 1098s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 7s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 24s</item>
- <item>ROI estimation of 'lpba40' atlas 7s</item>
- <item>ROI estimation of 'hammers' atlas 16s</item>
- <item>ROI estimation of 'thalamus' atlas 1s</item>
- <item>ROI estimation of 'ibsr' atlas 6s</item>
- <item>ROI estimation of 'aal3' atlas 9s</item>
- <item>ROI estimation of 'mori' atlas 13s</item>
- <item>ROI estimation of 'anatomy3' atlas 19s</item>
- <item>ROI estimation of 'julichbrain' atlas 24s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 10s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 17s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 38s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 58s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 5s</item>
- <item>Write results 6s</item>
- <item>254s</item>
- <item>Quality check: 8s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2677822/ds/BNU_2/sub-0025948/ses-2/report/catreport_sub-0025948_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 32 minute(s) and 31 second(s).</item>
- <item>Image Quality Rating (IQR): 82.38% (B-)</item>
- <item>GM volume (GMV): 47.30% (661.91 / 1399.44 ml)</item>
- <item>GM thickness (GMT): 2.44 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2677822/ds/BNU_2/sub-0025948/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2677822/ds/BNU_2/sub-0025948/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2677822/ds/BNU_2/sub-0025948/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|