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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <expertgui>1</expertgui>
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- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>1</td>
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- <td>/var/lib/condor/execute/dir_2999354/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
- <LAB>
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- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>14</SurfaceEulerNumber>
- <SurfaceDefectArea>0.477576782376558</SurfaceDefectArea>
- <SurfaceDefectNumber>13.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0655843466520309</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0638040825724602</SurfacePositionRMSE>
- <res_vx_vol>[1 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1</res_RMS>
- <res_BB>196.364898681641</res_BB>
- <tissue_mn>[8.0644998550415 51.8429985046387 193.029006958008 332.316986083984]</tissue_mn>
- <tissue_mnr>[0.0242674928158522 0.156004667282104 0.580858051776886 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.11859818508371 32.2881732445538 39.2937913399988 25.3303560061989]</tissue_std>
- <tissue_stdr>[0.0127018252387643 0.0995772629976273 0.121182702481747 0.0781192407011986]</tissue_stdr>
- <contrast>115.453582763672</contrast>
- <contrastr>0.347420036792755</contrastr>
- <res_ECR>0.340384721755981</res_ECR>
- <NCR>0.143146187067032</NCR>
- <ICR>0.384170711040497</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_ECR>2.63461589813232</res_ECR>
- <res_BB>10.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.8720326423645</contrastr>
- <NCR>2.38596296310425</NCR>
- <ICR>1.41262578964233</ICR>
- <SurfaceEulerNumber>1.61224489795918</SurfaceEulerNumber>
- <SurfaceDefectArea>1.11939419559414</SurfaceDefectArea>
- <SurfaceDefectNumber>1.675</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.31168699264526</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.27608168125153</SurfacePositionRMSE>
- <SIQR>2.42835796082704</SIQR>
- <IQR>2.24841376940958</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-011818</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>14</SurfaceEulerNumber>
- <SurfaceDefectArea>0.477576782376558</SurfaceDefectArea>
- <SurfaceDefectNumber>13.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0655843466520309</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0638040825724602</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>14</EC_abs>
- <defect_size>0.477576782376558</defect_size>
- <vol_abs_CGW>[207.329415686275 777.8552 554.896909803922 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.387364705882353</vol_abs_WMH>
- <vol_rel_WMH>0.000251522208059121</vol_rel_WMH>
- <surf_TSA>2185.73991857499</surf_TSA>
- <vol_TIV>1540.0815254902</vol_TIV>
- <vol_rel_CGW>[0.134622363981857 0.505074041292986 0.360303594725157 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.62149740156607 0.587942260995509]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.61142349243164 0.691250249846755 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[2.06362817575242 0.226220272609799 0.300834807607253;2.6278787480376 0.164872522567537 0.407004643962848;3.23443338975727 0.251770880083481 0.292160548429898]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[1.01730824797102 0.404921340385515 0.504507405022537;4.10324332251651 0.310153698778475 0.495492594977463]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.45346828057178</vol_TIV>
- <vol_rel_CGW>[0.5 6.9208699944861 4.32082605469032 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.02515222080591</vol_rel_WMH>
- <surf_TSA>8.62387626531694</surf_TSA>
- <SQR>5.67581428437712</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336 0.39006530190102]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00132237828802317 0.00103997718542814 0.0383616462349892]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[925.769549019608 486.361874509804 353.309866666667 610.046576470588 1142.33981568627 8512.82556470588]</SPMvols0>
- <SPMvols1>[836.466933333333 462.967701960784 193.865505882353 463.356815686275 948.722776470588 8628.99175686274]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[68.8252029418945 214.845596313477 335.830902099609]</T3th>
- <Tth>
- <T3th>[-3.91230010986328 -3.91229724884033 3.53469300270081 68.8252029418945 214.845596313477 335.830902099609 469.333740234375 662.860595703125]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0192638002336025 0.060764953494072 0.0657301396131516 0 0]</dtc>
- <ll>[0.0781349527115534 0 0.0781349527115534 0;0.190070565579748 0.0079503900864545 0.198020955666202 1695.40478515625;0.190070565579748 0.0079503900864545 0.198020955666202 1695.40478515625]</ll>
- <rmsdtc>[0.0405147522687912 0.0781110897660255 0.0863302499055862]</rmsdtc>
- <rmsgdt>[0.0288078766316175 0.0380397737026215 0.0470347627997398]</rmsgdt>
- <rmsdt>0.0863302499055862</rmsdt>
- <dt>0.0657301396131516</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00875508319586515 0.0298744663596153 0.0404253713786602 0.0479668825864792 0.0540932901203632 0.0596629828214645]</dtc>
- <ll>[0.0791574964977624 0 0.0791574964977624 0;0.20970699023199 0.0104538614163614 0.220160851648352 5351.0703125;0.193752001668723 0.0136112577626537 0.207363259431377 9796.185546875;0.175421110698414 0.0164935862802938 0.191914696978708 17784.572265625;0.15882897133969 0.0197021212092414 0.178531092548931 34465.96484375;0.15882897133969 0.0197021212092414 0.178531092548931 34465.96484375]</ll>
- <rmsdtc>[0.0102148624137044 0.0343811064958572 0.049535121768713 0.0709685683250427 0.0932509452104568 0.0991214960813522]</rmsdtc>
- <rmsgdt>[0.00301967211998999 0.0110549293458462 0.0245219022035599 0.0440998151898384 0.0629649460315704 0.0678773522377014]</rmsgdt>
- <rmsdt>0.0991214960813522</rmsdt>
- <dt>0.0596629828214645</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025945/ses-2/sub-0025945_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 54s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 5s</item>
- <item>37s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 79s</item>
- <item>SPM preprocessing 1 (estimate 2): 68s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 17s</item>
- <item>Update Segmentation 19s</item>
- <item>Update Skull-Stripping 42s</item>
- <item>Update probability maps 9s</item>
- <item>87s</item>
- <item>Global intensity correction: 17s</item>
- <item>SANLM denoising after intensity normalization (medium): 30s</item>
- <item>Fast Optimized Shooting registration 32s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 15s</item>
- <item>Estimate local tissue thresholds (WM) 19s</item>
- <item>Estimate local tissue thresholds (GM) 27s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 40s</item>
- <item>111s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 8s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 19s</item>
- <item>Blood vessel detection 9s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 25s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 4s</item>
- <item>74s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 35s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.07,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0792 0.0000 0.0792 | 32.0000</item>
- <item>2 | 2.50 | 0.0772 0.0010 0.0782 | 29.4886</item>
- <item>3 | 2.50 | 0.0766 0.0014 0.0781 | 26.9772</item>
- <item>4 | 2.50 | 0.0764 0.0016 0.0780 | 24.6107</item>
- <item>5 | 2.50 | 0.0762 0.0017 0.0779 | 22.6548</item>
- <item>6 | 2.50 | 0.0760 0.0018 0.0777 | 20.6989</item>
- <item>7 | 2.50 | 0.0758 0.0018 0.0776 | 18.9688</item>
- <item>8 | 2.50 | 0.0756 0.0019 0.0775 | 17.4455</item>
- <item>9 | 2.50 | 0.0754 0.0020 0.0773 | 15.9223</item>
- <item>10 | 2.50 | 0.0751 0.0020 0.0772 | 14.6627</item>
- <item>11 | 2.50 | 0.0749 0.0021 0.0770 | 13.4764</item>
- <item>12 | 2.50 | 0.0747 0.0021 0.0768 | 12.3015</item>
- <item>13 | 2.50 | 0.0745 0.0022 0.0767 | 11.3776</item>
- <item>14 | 2.50 | 0.0742 0.0023 0.0765 | 10.4537</item>
- <item>15 | 2.25 | 0.0723 0.0023 0.0746 | 9.5920</item>
- <item>16 | 2.25 | 0.0699 0.0035 0.0734 | 8.8725</item>
- <item>29 | 2.00 | 0.0716 0.0016 0.0732 | 3.3283</item>
- <item>30 | 2.00 | 0.0664 0.0037 0.0700 | 3.1221</item>
- <item>31 | 2.00 | 0.0646 0.0045 0.0691 | 2.9160</item>
- <item>43 | 1.75 | 0.0640 0.0026 0.0665 | 1.5785</item>
- <item>44 | 1.75 | 0.0598 0.0047 0.0646 | 1.5194</item>
- <item>45 | 1.75 | 0.0585 0.0055 0.0640 | 1.4626</item>
- <item>57 | 1.50 | 0.0570 0.0039 0.0610 | 1.0900</item>
- <item>58 | 1.50 | 0.0540 0.0059 0.0599 | 1.0730</item>
- <item>59 | 1.50 | 0.0529 0.0066 0.0595 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 168s</item>
- <item>Prepare output 11s</item>
- <item>179s</item>
- <item>Jacobian determinant (RMS): 0.010 0.034 0.050 0.071 0.093 | 0.099121</item>
- <item>Template Matching: 0.079 0.210 0.194 0.175 0.159 | 0.158829</item>
- <item>Write result maps: 34s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 29s</item>
- <item>CSF distance: 17s</item>
- <item>PBT2x thickness: 48s</item>
- <item>101s</item>
- <item>Create initial surface 95s</item>
- <item>Topology correction: 105s</item>
- <item>Surface refinement: 96s</item>
- <item>Reduction of surface collisions with optimization: 88s</item>
- <item>Spherical mapping with areal smoothing 92s</item>
- <item>Spherical registration 296s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 28s</item>
- <item>CSF distance: 16s</item>
- <item>PBT2x thickness: 48s</item>
- <item>98s</item>
- <item>Create initial surface 93s</item>
- <item>Topology correction: 106s</item>
- <item>Surface refinement: 92s</item>
- <item>Reduction of surface collisions with optimization: 89s</item>
- <item>Spherical mapping with areal smoothing 100s</item>
- <item>Spherical registration 315s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.6215 0.5879 mm</item>
- <item>Surface intensity / position RMSE: 0.0656 / 0.0638</item>
- <item>Euler number / defect number / defect size: 14.0 / 13.5 / 0.48%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2999354/ds/BNU_2/sub-0025945/ses-2/surf/lh.thickness.sub-0025945_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2999354/ds/BNU_2/sub-0025945/ses-2/surf/rh.thickness.sub-0025945_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2999354/ds/BNU_2/sub-0025945/ses-2/sub-0025945_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 1874s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 11s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 41s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 29s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 10s</item>
- <item>ROI estimation of 'aal3' atlas 14s</item>
- <item>ROI estimation of 'mori' atlas 20s</item>
- <item>ROI estimation of 'anatomy3' atlas 32s</item>
- <item>ROI estimation of 'julichbrain' atlas 40s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 33s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 67s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 101s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 8s</item>
- <item>Write results 9s</item>
- <item>439s</item>
- <item>Quality check: 12s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2999354/ds/BNU_2/sub-0025945/ses-2/report/catreport_sub-0025945_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 54 minute(s) and 37 second(s).</item>
- <item>Image Quality Rating (IQR): 82.52% (B-)</item>
- <item>GM volume (GMV): 50.51% (777.86 / 1540.08 ml)</item>
- <item>GM thickness (GMT): 2.62 0.59 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2999354/ds/BNU_2/sub-0025945/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2999354/ds/BNU_2/sub-0025945/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2999354/ds/BNU_2/sub-0025945/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|