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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <verb>2</verb>
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- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_3318795/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <PH>25</PH>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>14</SurfaceEulerNumber>
- <SurfaceDefectArea>0.601024029423838</SurfaceDefectArea>
- <SurfaceDefectNumber>11.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0654757469892502</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0733358561992645</SurfacePositionRMSE>
- <res_vx_vol>[1 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1</res_RMS>
- <res_BB>192.317825317383</res_BB>
- <tissue_mn>[7.99599981307983 57.8699989318848 220.294006347656 358.154998779297]</tissue_mn>
- <tissue_mnr>[0.0223255287855864 0.161578088998795 0.615080058574677 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[5.34181881357919 36.8905961847229 41.7869032801341 23.9798840773469]</tissue_std>
- <tissue_stdr>[0.0152554092928767 0.105353847146034 0.119336940348148 0.0684828460216522]</tissue_stdr>
- <contrast>126.998680114746</contrast>
- <contrastr>0.354591399431229</contrastr>
- <res_ECR>0.347680509090424</res_ECR>
- <NCR>0.132293581962585</NCR>
- <ICR>0.349510788917542</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2 2 2]</res_vx_vol>
- <res_RMS>2</res_RMS>
- <res_ECR>2.67183923721313</res_ECR>
- <res_BB>10.5</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.76446223258972</contrastr>
- <NCR>2.23016929626465</NCR>
- <ICR>1.32666373252869</ICR>
- <SurfaceEulerNumber>1.61224489795918</SurfaceEulerNumber>
- <SurfaceDefectArea>1.15025600735596</SurfaceDefectArea>
- <SurfaceDefectNumber>1.575</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.30951499938965</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.46671712398529</SurfacePositionRMSE>
- <SIQR>2.41447475049563</SIQR>
- <IQR>2.13639679906819</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-021955</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>14</SurfaceEulerNumber>
- <SurfaceDefectArea>0.601024029423838</SurfaceDefectArea>
- <SurfaceDefectNumber>11.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0654757469892502</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0733358561992645</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>14</EC_abs>
- <defect_size>0.601024029423838</defect_size>
- <vol_abs_CGW>[199.652623529412 766.485878431373 611.797403921569 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.654513725490196</vol_abs_WMH>
- <vol_rel_WMH>0.000414791071709724</vol_rel_WMH>
- <surf_TSA>2174.64934985366</surf_TSA>
- <vol_TIV>1577.93590588235</vol_TIV>
- <vol_rel_CGW>[0.12652771432929 0.485752225786869 0.387720059883841 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.52187633077728 0.586907854693881]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.53255271911621 0.711544057450744 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.94647855894593 0.24359851007284 0.285918276425365;2.54122759089246 0.164315517398544 0.432778532996721;3.13745826411988 0.252593627789859 0.281303190577914]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.917055402123717 0.347556061411083 0.551030796640366;4.06818719020146 0.366142685727251 0.448969203359633]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.71821160176173</vol_TIV>
- <vol_rel_CGW>[0.5 6.57385462979291 4.81321946630461 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04147910717097</vol_rel_WMH>
- <surf_TSA>8.62384970477765</surf_TSA>
- <SQR>5.42946226750657</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.336 0.386907405847702]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00146271719131619 0.00126937124878168 0.0612794943153858]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[924.914270588235 538.225494117647 348.871345098039 693.017835294118 1140.00487843137 8485.74325882353]</SPMvols0>
- <SPMvols1>[816.932835294118 512.980466666667 182.935258823529 532.697850980392 906.218854901961 8582.65298431373]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[73.8461990356445 239.321701049805 356.893585205078]</T3th>
- <Tth>
- <T3th>[-4.74485015869141 -4.74484634399414 4.39400243759155 73.8461990356445 239.321701049805 356.893585205078 498.417297363281 802.233459472656]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0224730111658573 0.0797159150242805 0.0874593779444695 0 0]</dtc>
- <ll>[0.0814790637934861 0 0.0814790637934861 0;0.186280597444056 0.00998109471755011 0.196261692161606 2128.44848632812;0.186280597444056 0.00998109471755011 0.196261692161606 2128.44848632812]</ll>
- <rmsdtc>[0.0475811325013638 0.100809991359711 0.110150940716267]</rmsdtc>
- <rmsgdt>[0.0337074212729931 0.0428170002996922 0.0524832680821419]</rmsgdt>
- <rmsdt>0.110150940716267</rmsdt>
- <dt>0.0874593779444695</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0108146285638213 0.0401079058647156 0.0551358945667744 0.0623648017644882 0.0677541121840477 0.0764482840895653]</dtc>
- <ll>[0.081549564982242 0 0.081549564982242 0;0.210346123321123 0.0140227335164835 0.224368856837607 7177.88671875;0.188225420376484 0.016504369217305 0.204729789593789 11878.392578125;0.168517428812025 0.0180636385114331 0.186581067323458 19477.515625;0.1524717995739 0.0206363572346462 0.173108156808546 36100.2734375;0.1524717995739 0.0206363572346462 0.173108156808546 36100.2734375]</ll>
- <rmsdtc>[0.0125577664002776 0.045668039470911 0.0668090209364891 0.0912359952926636 0.113495081663132 0.120371639728546]</rmsdtc>
- <rmsgdt>[0.00349081098102033 0.0134927229955792 0.0288407597690821 0.0488826930522919 0.066661536693573 0.0719346478581429]</rmsgdt>
- <rmsdt>0.120371639728546</rmsdt>
- <dt>0.0764482840895653</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025935/ses-2/sub-0025935_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 71s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 8s</item>
- <item>Estimate background 7s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 4s</item>
- <item>Final correction 7s</item>
- <item>Final scaling 6s</item>
- <item>47s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 11s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 92s</item>
- <item>SPM preprocessing 1 (estimate 2): 75s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 24s</item>
- <item>Update Segmentation 25s</item>
- <item>Update Skull-Stripping 52s</item>
- <item>Update probability maps 11s</item>
- <item>112s</item>
- <item>Global intensity correction: 20s</item>
- <item>SANLM denoising after intensity normalization (medium): 39s</item>
- <item>Fast Optimized Shooting registration 43s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.03) 19s</item>
- <item>Estimate local tissue thresholds (WM) 26s</item>
- <item>Estimate local tissue thresholds (GM) 39s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 56s</item>
- <item>151s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 5s</item>
- <item>Ventricle detection 18s</item>
- <item>Blood vessel detection 13s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 31s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>88s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 41s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 6s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 4s</item>
- <item>15s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0815 0.0000 0.0815 | 32.0000</item>
- <item>2 | 2.50 | 0.0787 0.0012 0.0799 | 29.4886</item>
- <item>3 | 2.50 | 0.0778 0.0019 0.0797 | 26.9772</item>
- <item>4 | 2.50 | 0.0774 0.0021 0.0795 | 24.6107</item>
- <item>5 | 2.50 | 0.0771 0.0023 0.0794 | 22.6548</item>
- <item>6 | 2.50 | 0.0768 0.0024 0.0792 | 20.6989</item>
- <item>7 | 2.50 | 0.0765 0.0025 0.0790 | 18.9688</item>
- <item>8 | 2.50 | 0.0762 0.0026 0.0788 | 17.4455</item>
- <item>9 | 2.50 | 0.0758 0.0027 0.0785 | 15.9223</item>
- <item>10 | 2.50 | 0.0755 0.0028 0.0783 | 14.6627</item>
- <item>11 | 2.50 | 0.0752 0.0029 0.0781 | 13.4764</item>
- <item>12 | 2.50 | 0.0748 0.0030 0.0778 | 12.3015</item>
- <item>13 | 2.50 | 0.0745 0.0031 0.0775 | 11.3776</item>
- <item>14 | 2.50 | 0.0741 0.0031 0.0773 | 10.4537</item>
- <item>15 | 2.25 | 0.0731 0.0032 0.0763 | 9.5920</item>
- <item>16 | 2.25 | 0.0701 0.0047 0.0748 | 8.8725</item>
- <item>29 | 2.00 | 0.0709 0.0021 0.0730 | 3.3283</item>
- <item>30 | 2.00 | 0.0648 0.0045 0.0693 | 3.1221</item>
- <item>31 | 2.00 | 0.0627 0.0055 0.0682 | 2.9160</item>
- <item>43 | 1.75 | 0.0615 0.0032 0.0647 | 1.5785</item>
- <item>44 | 1.75 | 0.0575 0.0053 0.0628 | 1.5194</item>
- <item>45 | 1.75 | 0.0562 0.0060 0.0622 | 1.4626</item>
- <item>57 | 1.50 | 0.0547 0.0044 0.0591 | 1.0900</item>
- <item>58 | 1.50 | 0.0518 0.0063 0.0580 | 1.0730</item>
- <item>59 | 1.50 | 0.0508 0.0069 0.0577 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 203s</item>
- <item>Prepare output 15s</item>
- <item>217s</item>
- <item>Jacobian determinant (RMS): 0.013 0.046 0.067 0.091 0.113 | 0.120372</item>
- <item>Template Matching: 0.082 0.210 0.188 0.169 0.152 | 0.152472</item>
- <item>Write result maps: 42s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 43s</item>
- <item>CSF distance: 20s</item>
- <item>PBT2x thickness: 63s</item>
- <item>134s</item>
- <item>Create initial surface 111s</item>
- <item>Topology correction: 127s</item>
- <item>Surface refinement: 117s</item>
- <item>Reduction of surface collisions with optimization: 95s</item>
- <item>Spherical mapping with areal smoothing 118s</item>
- <item>Spherical registration 358s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 39s</item>
- <item>CSF distance: 22s</item>
- <item>PBT2x thickness: 63s</item>
- <item>132s</item>
- <item>Create initial surface 111s</item>
- <item>Topology correction: 126s</item>
- <item>Surface refinement: 132s</item>
- <item>Reduction of surface collisions with optimization: 94s</item>
- <item>Spherical mapping with areal smoothing 123s</item>
- <item>Spherical registration 368s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5222 0.5858 mm</item>
- <item>Surface intensity / position RMSE: 0.0655 / 0.0733</item>
- <item>Euler number / defect number / defect size: 14.0 / 11.5 / 0.60%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-2/surf/lh.thickness.sub-0025935_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-2/surf/rh.thickness.sub-0025935_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-2/sub-0025935_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 11s</item>
- <item>Surface and thickness estimation takes: 2273s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 10s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 37s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 26s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 9s</item>
- <item>ROI estimation of 'aal3' atlas 16s</item>
- <item>ROI estimation of 'mori' atlas 22s</item>
- <item>ROI estimation of 'anatomy3' atlas 32s</item>
- <item>ROI estimation of 'julichbrain' atlas 42s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 17s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 69s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 113s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 9s</item>
- <item>Write results 11s</item>
- <item>445s</item>
- <item>Quality check: 16s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-2/report/catreport_sub-0025935_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 65 minute(s) and 10 second(s).</item>
- <item>Image Quality Rating (IQR): 83.64% (B)</item>
- <item>GM volume (GMV): 48.58% (766.49 / 1577.94 ml)</item>
- <item>GM thickness (GMT): 2.52 0.59 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|