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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
- <gcutstr>2</gcutstr>
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- <restype>optimal</restype>
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- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- <shootingtpm>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <verb>2</verb>
- <ignoreErrors>1</ignoreErrors>
- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/var/lib/condor/execute/dir_566017/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
- <BG>5</BG>
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- <MB>13</MB>
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- <PH>25</PH>
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- </darteltpms>
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- </shootingtpms>
- <templates>
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- </templates>
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- <SurfaceEulerNumber>24</SurfaceEulerNumber>
- <SurfaceDefectArea>0.72942247588001</SurfaceDefectArea>
- <SurfaceDefectNumber>11.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0683440640568733</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0681329369544983</SurfacePositionRMSE>
- <res_vx_vol>[1.00000001256379 1 1.00000001256379]</res_vx_vol>
- <res_vx_voli>[1.00000001237443 1 1.00000001237443]</res_vx_voli>
- <res_RMS>1.00000000837586</res_RMS>
- <res_BB>0</res_BB>
- <tissue_mn>[7.42700004577637 48.7360000610352 182.850997924805 310.135009765625]</tissue_mn>
- <tissue_mnr>[0.0239476356655359 0.157144472002983 0.589585185050964 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[4.7632568486291 31.6516542943902 36.4561278151817 23.5289078591489]</tissue_std>
- <tissue_stdr>[0.0157354827970266 0.104561671614647 0.120433308184147 0.0777280628681183]</tissue_stdr>
- <contrast>108.310440063477</contrast>
- <contrastr>0.34923642873764</contrastr>
- <res_ECR>0.341369092464447</res_ECR>
- <NCR>0.163010448217392</NCR>
- <ICR>0.327945649623871</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.00000002512758 2 2.00000002512758]</res_vx_vol>
- <res_RMS>2.00000001675172</res_RMS>
- <res_ECR>2.6396381855011</res_ECR>
- <res_BB>1</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.84478688240051</contrastr>
- <NCR>2.67112350463867</NCR>
- <ICR>1.27317869663239</ICR>
- <SurfaceEulerNumber>2.12244897959184</SurfaceEulerNumber>
- <SurfaceDefectArea>1.18235561897</SurfaceDefectArea>
- <SurfaceDefectNumber>1.575</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.36688125133514</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.36265873908997</SurfacePositionRMSE>
- <SIQR>2.54042867638921</SIQR>
- <IQR>2.47844495968104</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-011252</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>24</SurfaceEulerNumber>
- <SurfaceDefectArea>0.72942247588001</SurfaceDefectArea>
- <SurfaceDefectNumber>11.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0683440640568733</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0681329369544983</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>24</EC_abs>
- <defect_size>0.72942247588001</defect_size>
- <vol_abs_CGW>[233.302190087688 701.264735002559 475.469792159491 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.923235316966666</vol_abs_WMH>
- <vol_rel_WMH>0.000654759770204727</vol_rel_WMH>
- <surf_TSA>1957.02914901838</surf_TSA>
- <vol_TIV>1410.03671724974</vol_TIV>
- <vol_rel_CGW>[0.165458237529262 0.497337924909054 0.337203837561684 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.52387965687825 0.620744173626752]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.49496173858643 0.778592306422791 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.9534292014637 0.253303334536116 0.327904513297772;2.55175170112742 0.176206010295528 0.431499766705759;3.2306285163257 0.281936004482078 0.240595719996469]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.912581476532478 0.318657265821706 0.492655262179249;4.24772580809835 0.338388640988657 0.507344737820751]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.00239965016573</vol_TIV>
- <vol_rel_CGW>[0.821448231488182 6.78193112264824 3.90595972632335 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.06547597702047</vol_rel_WMH>
- <surf_TSA>8.61919029357053</surf_TSA>
- <SQR>5.55437718547015</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.33628983 0.404047586263253]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00126508693210781 0.00109435268677771 0.0858787596225739]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[831.100193117799 422.252677116938 375.433405369979 855.199515282857 1191.51613929258 8453.49016999853]</SPMvols0>
- <SPMvols1>[745.336743936428 400.242649121234 208.672789478138 611.505489643866 985.94177342054 8583.43624380278]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[58.8872985839844 198.598007202148 307.460998535156]</T3th>
- <Tth>
- <T3th>[-3.74173998832703 -3.74173808097839 2.67498707771301 58.8872985839844 198.598007202148 307.460998535156 431.747863769531 577.791015625]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0225710235536098 0.0842823088169098 0.0941087082028389 0 0]</dtc>
- <ll>[0.086572440255399 0 0.086572440255399 0;0.191994565160048 0.0121253724573325 0.204119937617381 2585.71142578125;0.191994565160048 0.0121253724573325 0.204119937617381 2585.71142578125]</ll>
- <rmsdtc>[0.0492207147181034 0.112752601504326 0.124282188713551]</rmsdtc>
- <rmsgdt>[0.0352123230695724 0.0492058955132961 0.0597970671951771]</rmsgdt>
- <rmsdt>0.124282188713551</rmsdt>
- <dt>0.0941087082028389</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.0108610354363918 0.0420516170561314 0.0599512718617916 0.068421833217144 0.074829027056694 0.0852084308862686]</dtc>
- <ll>[0.0873178926988646 0 0.0873178926988646 0;0.22277268009768 0.0174262515262515 0.240198931623932 8920.0625;0.197773727546574 0.0195432475290463 0.217316975075621 14065.509765625;0.175974223688457 0.0206355468952871 0.196609770583744 22250.732421875;0.158804640915813 0.0232012474754952 0.182005888391308 40587.171875;0.158804640915813 0.0232012474754952 0.182005888391308 40587.171875]</ll>
- <rmsdtc>[0.0127626433968544 0.0489797368645668 0.0735001564025879 0.100775107741356 0.12450860440731 0.131459832191467]</rmsdtc>
- <rmsgdt>[0.00356451096013188 0.0142721431329846 0.0306967776268721 0.0510704107582569 0.0687671527266502 0.0739766582846642]</rmsgdt>
- <rmsdt>0.131459832191467</rmsdt>
- <dt>0.0852084308862686</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025932/ses-2/sub-0025932_ses-2_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 46s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 6s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 5s</item>
- <item>Final scaling 5s</item>
- <item>36s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 9s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 86s</item>
- <item>SPM preprocessing 1 (estimate 2): 75s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 17s</item>
- <item>Update Segmentation 18s</item>
- <item>Update Skull-Stripping 41s</item>
- <item>Update probability maps 8s</item>
- <item>84s</item>
- <item>Global intensity correction: 16s</item>
- <item>SANLM denoising after intensity normalization (medium): 26s</item>
- <item>Fast Optimized Shooting registration 33s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 4s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.05) 14s</item>
- <item>Estimate local tissue thresholds (WM) 18s</item>
- <item>Estimate local tissue thresholds (GM) 26s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 40s</item>
- <item>108s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 15s</item>
- <item>Blood vessel detection 9s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.03) 23s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>66s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.05): 34s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.07,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0873 0.0000 0.0873 | 32.0000</item>
- <item>2 | 2.50 | 0.0836 0.0015 0.0851 | 29.4886</item>
- <item>3 | 2.50 | 0.0824 0.0023 0.0847 | 26.9772</item>
- <item>4 | 2.50 | 0.0818 0.0026 0.0845 | 24.6107</item>
- <item>5 | 2.50 | 0.0814 0.0029 0.0842 | 22.6548</item>
- <item>6 | 2.50 | 0.0810 0.0030 0.0839 | 20.6989</item>
- <item>7 | 2.50 | 0.0805 0.0031 0.0837 | 18.9688</item>
- <item>8 | 2.50 | 0.0801 0.0033 0.0834 | 17.4455</item>
- <item>9 | 2.50 | 0.0797 0.0034 0.0831 | 15.9223</item>
- <item>10 | 2.50 | 0.0792 0.0035 0.0828 | 14.6627</item>
- <item>11 | 2.50 | 0.0788 0.0037 0.0824 | 13.4764</item>
- <item>12 | 2.50 | 0.0783 0.0038 0.0821 | 12.3015</item>
- <item>13 | 2.50 | 0.0778 0.0039 0.0817 | 11.3776</item>
- <item>14 | 2.50 | 0.0774 0.0040 0.0814 | 10.4537</item>
- <item>15 | 2.25 | 0.0777 0.0041 0.0818 | 9.5920</item>
- <item>16 | 2.25 | 0.0743 0.0058 0.0801 | 8.8725</item>
- <item>29 | 2.00 | 0.0753 0.0026 0.0779 | 3.3283</item>
- <item>30 | 2.00 | 0.0684 0.0054 0.0738 | 3.1221</item>
- <item>31 | 2.00 | 0.0659 0.0065 0.0724 | 2.9160</item>
- <item>43 | 1.75 | 0.0646 0.0038 0.0684 | 1.5785</item>
- <item>44 | 1.75 | 0.0602 0.0061 0.0663 | 1.5194</item>
- <item>45 | 1.75 | 0.0587 0.0069 0.0655 | 1.4626</item>
- <item>57 | 1.50 | 0.0571 0.0051 0.0622 | 1.0900</item>
- <item>58 | 1.50 | 0.0540 0.0071 0.0611 | 1.0730</item>
- <item>59 | 1.50 | 0.0529 0.0077 0.0607 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 171s</item>
- <item>Prepare output 11s</item>
- <item>182s</item>
- <item>Jacobian determinant (RMS): 0.013 0.049 0.074 0.101 0.125 | 0.131460</item>
- <item>Template Matching: 0.087 0.223 0.198 0.176 0.159 | 0.158805</item>
- <item>Write result maps: 35s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 30s</item>
- <item>CSF distance: 16s</item>
- <item>PBT2x thickness: 44s</item>
- <item>96s</item>
- <item>Create initial surface 86s</item>
- <item>Topology correction: 94s</item>
- <item>Surface refinement: 76s</item>
- <item>Reduction of surface collisions with optimization: 70s</item>
- <item>Spherical mapping with areal smoothing 78s</item>
- <item>Spherical registration 300s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 34s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 43s</item>
- <item>97s</item>
- <item>Create initial surface 86s</item>
- <item>Topology correction: 93s</item>
- <item>Surface refinement: 107s</item>
- <item>Reduction of surface collisions with optimization: 69s</item>
- <item>Spherical mapping with areal smoothing 81s</item>
- <item>Spherical registration 300s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5239 0.6208 mm</item>
- <item>Surface intensity / position RMSE: 0.0683 / 0.0681</item>
- <item>Euler number / defect number / defect size: 24.0 / 11.5 / 0.73%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_566017/ds/BNU_2/sub-0025932/ses-2/surf/lh.thickness.sub-0025932_ses-2_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_566017/ds/BNU_2/sub-0025932/ses-2/surf/rh.thickness.sub-0025932_ses-2_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_566017/ds/BNU_2/sub-0025932/ses-2/sub-0025932_ses-2_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 9s</item>
- <item>Surface and thickness estimation takes: 1730s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 8s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 30s</item>
- <item>ROI estimation of 'lpba40' atlas 9s</item>
- <item>ROI estimation of 'hammers' atlas 22s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 8s</item>
- <item>ROI estimation of 'aal3' atlas 13s</item>
- <item>ROI estimation of 'mori' atlas 19s</item>
- <item>ROI estimation of 'anatomy3' atlas 28s</item>
- <item>ROI estimation of 'julichbrain' atlas 38s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 16s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 27s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 64s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 12s</item>
- <item>Write results 14s</item>
- <item>435s</item>
- <item>Quality check: 14s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_566017/ds/BNU_2/sub-0025932/ses-2/report/catreport_sub-0025932_ses-2_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 52 minute(s) and 13 second(s).</item>
- <item>Image Quality Rating (IQR): 80.22% (B-)</item>
- <item>GM volume (GMV): 49.73% (701.26 / 1410.04 ml)</item>
- <item>GM thickness (GMT): 2.52 0.62 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_566017/ds/BNU_2/sub-0025932/ses-2/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_566017/ds/BNU_2/sub-0025932/ses-2/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_566017/ds/BNU_2/sub-0025932/ses-2/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|